Gene
| Gene Model ID | ahya_s0011.g154 |
|---|---|
| Locus | sc0000011 : 3496557 ... 3507090 : - |
| To GenomeBrowser | sc0000011:3496557..3507090 |
| Genes list of scaffold | sc0000011 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| ahya_s0011.g154.t1 | 1 | 1 | RNase_PH | 34 | 165 | 5.3e-18 | 65.7 | 2.1e-21 | 1.7e-17 | 64.0 |
| ahya_s0011.g154.t1 | 1 | 1 | RNase_PH_C | 191 | 257 | 1.7e-12 | 47.0 | 1.3e-15 | 1.0e-11 | 44.5 |
Results of InterPro Scan
| Gene Model ID | Analysis | Start | End | i_acc | i_desc | GO | Pathway |
|---|---|---|---|---|---|---|---|
| ahya_s0011.g154.t1 | PANTHER | 1 | 305 | ||||
| ahya_s0011.g154.t1 | PANTHER | 1 | 305 | ||||
| ahya_s0011.g154.t1 | SUPERFAMILY | 5 | 170 | IPR020568 | Ribosomal protein S5 domain... | ||
| ahya_s0011.g154.t1 | Gene3D | 5 | 305 | IPR027408 | PNPase/RNase PH domain supe... | Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 | |
| ahya_s0011.g154.t1 | CDD | 8 | 266 | IPR033100 | Exosome complex component R... | GO:0000178|GO:0006396 | Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 |
| ahya_s0011.g154.t1 | Pfam | 34 | 165 | IPR001247 | Exoribonuclease, phosphorol... | Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 | |
| ahya_s0011.g154.t1 | SUPERFAMILY | 187 | 283 | IPR036345 | Exoribonuclease, PH domain ... | Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 | |
| ahya_s0011.g154.t1 | Pfam | 191 | 257 | IPR015847 | Exoribonuclease, phosphorol... | Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 | |
| ahya_s0011.g154.t1 | SUPERFAMILY | 203 | 217 | IPR020568 | Ribosomal protein S5 domain... | ||
| ahya_s0011.g154.t1 | Coils | 353 | 373 | ||||
| ahya_s0011.g154.t1 | MobiDBLite | 383 | 462 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| ahya_s0011.g154.t1 | sp|Q3SWZ4|EXOS9_BOVIN | Exosome complex component RRP45 | 0.0 |
| ahya_s0011.g154.t1 | sp|Q06265|EXOS9_HUMAN | Exosome complex component RRP45 | 0.0 |
| ahya_s0011.g154.t1 | sp|Q4QR75|EXOS9_RAT | Exosome complex component RRP45 | 0.0 |
| ahya_s0011.g154.t1 | sp|Q9JHI7|EXOS9_MOUSE | Exosome complex component RRP45 | 0.0 |
| ahya_s0011.g154.t1 | sp|O74918|RRP45_SCHPO | Exosome complex component rrp45 | 0.0 |
Transcript
| Transcript ID | ahya_s0011.g154.t1 |
|---|---|
| Definition | - |
>ahya_s0011.g154.t1 cccgagcgctgataacgcctgactaaaaatttttaacatgaaaccaagtaacgtgcctctttcttcctccgagaaagttt ttcttcttcagggaataaaatccagaaagcgcttagatgggcgagaaacgtacgactataggaagcttcggatatccttt ggtgttgatcgaggccattgtgaggtacaactcggtcgaacgagggttttaggacaagtgtcatgtgaagttgttgagcc tagagccaatcgacctactgaaggccagatgttcatcaatgtcgaattatctcctatggcatctgctgcatttgaaggag ggaggtcaacagaatttagtgttgagctgaaccgattcatggagagattttatgttgaatcacaagctatagatgtagag tctttgtgtattgttgctggggaaaaggtctggcaggttaaagttgatctccatgttttggacaatggaggaaatattgc agattgcgcaagcatagctgcaattactgctttagctcatttcaggaagcctgatgtttctgttatcggtgaagaagtca ctattcattctccagaagaccgtgaaccagttcctttgagtattcttcacatgccagtctgtataacatttgggttttat gataaaggggagttcttgctggtagatccaactgataaggaagaaacaataatggatggaaggatgacaatggcaatgaa cattcatcgtgaaatctgtggggcagttatgggtggtggggtgtccctagaatctgaccagatcatcagatgttcaaaaa ttgcatcagtgaaggttgctgaacttactgaacttataaaagcatcgttggctgaagactccaagcaaaggtctcaagga aagacaggatttatagaatcagacaagaaaacctgtgcaatcacaattgcatcaactgatgaatctgatgtggacttgac agaagcaatagaaagagcagaagaaagacgcagcgaaatgtcatcagttccacctgatttccctttgcaatctgagttaa agggtcacggtacagcgcaggtaggttgtggtggtgataacacgtggtttgtcattgacgatgctgatgatgaacatatg gaagaagataatgagattgaaaaagcggattgtcgactcaaaaatgaagatgaagatgctgtcacaagaacctcgcgtaa gaagaacggaaagccagttgtacactgtactgtggatagtgatagtagtgaggaagaaattgtcatattgacagctaacg aagtgagcggtggacatgaaaacagttcgaaggcgacagtttcccaagaacaaatggacctcaacgtggctataaagggt gctaaagtgccagaagagggcttgtcaagaagcaacggaaggaaaaagaaaaagaagagaaagtgacccgaaacatcatg tttctgcattaaagttttaaatcgcctttgttcagttgttgtaaataaattttcagttataaagaacttgtgactctgat acggatgttttctagtctttctcgctactttttggcaaagcctaccctgtgccttgtcctcttaaccaatttccacccgg ccagaatgggcaaaccttcctttgcagaatcatggaaatacttgctttcaaagcaccccaggactgagaactatacataa taaattaacaacaacaac |
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Protein
| Protein ID | ahya_s0011.g154.t1 |
|---|---|
| Definition | - |
>ahya_s0011.g154.t1 MKPSNVPLSSSEKVFLLQGIKSRKRLDGRETYDYRKLRISFGVDRGHCEVQLGRTRVLGQVSCEVVEPRANRPTEGQMFI NVELSPMASAAFEGGRSTEFSVELNRFMERFYVESQAIDVESLCIVAGEKVWQVKVDLHVLDNGGNIADCASIAAITALA HFRKPDVSVIGEEVTIHSPEDREPVPLSILHMPVCITFGFYDKGEFLLVDPTDKEETIMDGRMTMAMNIHREICGAVMGG GVSLESDQIIRCSKIASVKVAELTELIKASLAEDSKQRSQGKTGFIESDKKTCAITIASTDESDVDLTEAIERAEERRSE MSSVPPDFPLQSELKGHGTAQVGCGGDNTWFVIDDADDEHMEEDNEIEKADCRLKNEDEDAVTRTSRKKNGKPVVHCTVD SDSSEEEIVILTANEVSGGHENSSKATVSQEQMDLNVAIKGAKVPEEGLSRSNGRKKKKKRK |
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