Gene
| Gene Model ID | ahya_s0011.g155 |
|---|---|
| Locus | sc0000011 : 3507191 ... 3509366 : + |
| To GenomeBrowser | sc0000011:3507191..3509366 |
| Genes list of scaffold | sc0000011 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| ahya_s0011.g155.t1 | 1 | 1 | PPR | 114 | 139 | 1.2e-11 | 43.9 | 2.8e-06 | 0.0066 | 16.5 |
| ahya_s0011.g155.t1 | 1 | 1 | PPR_2 | 114 | 138 | 2.1e-10 | 40.5 | 8.4e-06 | 0.02 | 15.0 |
| ahya_s0011.g155.t1 | 1 | 1 | PRORP | 288 | 522 | 3.4e-35 | 121.6 | 3.0e-38 | 7.1e-35 | 120.5 |
Results of InterPro Scan
| Gene Model ID | Analysis | Start | End | i_acc | i_desc | GO | Pathway |
|---|---|---|---|---|---|---|---|
| ahya_s0011.g155.t1 | Gene3D | 1 | 464 | IPR011990 | Tetratricopeptide-like heli... | GO:0005515 | |
| ahya_s0011.g155.t1 | PANTHER | 28 | 521 | IPR033495 | Mitochondrial ribonuclease ... | GO:0005739|GO:0008033 | Reactome: R-HSA-6785470|Reactome: R-HSA-8868766 |
| ahya_s0011.g155.t1 | PANTHER | 28 | 521 | ||||
| ahya_s0011.g155.t1 | Pfam | 114 | 139 | IPR002885 | Pentatricopeptide repeat | ||
| ahya_s0011.g155.t1 | TIGRFAM | 114 | 140 | IPR002885 | Pentatricopeptide repeat | ||
| ahya_s0011.g155.t1 | Pfam | 148 | 170 | IPR002885 | Pentatricopeptide repeat | ||
| ahya_s0011.g155.t1 | Pfam | 288 | 522 | IPR031595 | Protein-only RNase P, C-ter... | Reactome: R-HSA-6785470|Reactome: R-HSA-8868766 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| ahya_s0011.g155.t1 | sp|Q680B9|PRRP2_ARATH | Proteinaceous RNase P 2 | 2.0e-18 |
| ahya_s0011.g155.t1 | sp|F4JKB6|PRRP3_ARATH | Proteinaceous RNase P 3 | 1.0e-15 |
Transcript
| Transcript ID | ahya_s0011.g155.t1 |
|---|---|
| Definition | - |
>ahya_s0011.g155.t1 cctgtacgttggtcatcatgcagttcttaccaaccctaagaaaaccgttttttctcctgaatttctgcctactaagatct gtcagaaatattagcggtatatgtcagtgctacaggatttttttaacgaactgtcgctataatgtacaataggatcattg catcgaattcaagaattcgtgtgttgcgcacgtgcatgctgtgcaatagatttcagtcacttgatagcagaatttcagct gttaaactggatgaccaagagacgtttgaaagaaaaatgaacacccacgtagaagcaggaaagatctcggatgctttaaa gttgtttgaagacgggaggacaaaactgaaaatttcctggacaggtgagctaacatcctcacttttgcatttgtttacgt cacatggtgagcacaaagcagtcgacatattgtatgcagaaatgaagaagaatgcctcttacatcggagtgggagctaag acaaccatgatcaagtcctactgcaatcggcaacaatttgaagaagccattacaatgttgcatagtatgacaaatgagga catgatccatcacacccgccattatgactatgtcatcaaaagtctagctcaaagtggtcaaattaaaagagcctttcaaa tttttgatgagaaatgcaaacttcaaggccagtgttatgcaagcaaaggcaacagatctctgactgttgataagaaaatg attgcatcactgcttaatcccaacaatataacacagcacaagcgtagagggtatgaagaaatggaccattcgactcacat gatgatgagtaagtgcaatgaaggtgaggacgatgaaagatttaaaatctacaagttgtatgttggaatatcactcaaag tatttcactacttgcaacactcaggtgtaaaactttcaaaccagttacttcaggcagtacgcaattggttcagtcatgat ccgtgttaccactggacatggaaaacttgcaaggtctctgtgataggaatgtgctataactgtggcaatcaactcacttg tggtatttcacccagtgatatatctcatctagagagtgagataattaaattatcctgccatgttgaggaagatgttcctc tatttcaaggtaaaaagctggataagagagcctgtcaggagcttgaggacttcaaggactttgttaaaaggaagggccca tttgacattatcattgatggcttaaatgttggtctccatggttccaaggccaataggcacaacatggtgttctctatgga tagaattgaagagaccatcaagcattttgcttcccgaaagaaaaaagttttgcttataattcgtcatgaagctcttgtca ggaataatgcagaggtccttatcacaaacctggacaaagtttgctcaatttatgcaaacatgtttagcaatgatgatctg taccttctgtatgcagcagccttcagtggaatgcaacatgttcaaattgtaactaatgacaggcttagagatcatcggct gttattacccgttgctttatggtggatatttttgagatggacaaggctgaattgtgtatcgttcacatcaaaaggcaatg gaaaactgagcttcgtaactcaaaaatttgatccagttgtacagcgtgcaggaaagtcatggcactttccctctgaagat ggtacttggaggtgtgcatcaagaacagctaggtcatttaaggatgtttaatatcttgatcatgatccattatcgggata tttcaaacttgttttctaaccatgaagaccgtggaaactccaaagcatgctacataccgtaggctggtttatgtagctgc agaaagcttaagtgaaggagaaggttccagcacccagctttatatacctctggttataaatttttttatggtctttttag ctcagaagtccttccagctattgcaaccaggtctaccctggcatgaatcactttttttgaaacaatgtactgtcttatct ggcatttattctcacaattatcttgcattgagagtttgaaaataacatgttagggtcagaacattgatatgctgtcaaca acgtcttccacatttgtgactttattgtatctttagcttgcaatgatcatttcagtaggtcagcaaaagactgcaaaatg aatcgcatttttataa |
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Protein
| Protein ID | ahya_s0011.g155.t1 |
|---|---|
| Definition | - |
>ahya_s0011.g155.t1 MYNRIIASNSRIRVLRTCMLCNRFQSLDSRISAVKLDDQETFERKMNTHVEAGKISDALKLFEDGRTKLKISWTGELTSS LLHLFTSHGEHKAVDILYAEMKKNASYIGVGAKTTMIKSYCNRQQFEEAITMLHSMTNEDMIHHTRHYDYVIKSLAQSGQ IKRAFQIFDEKCKLQGQCYASKGNRSLTVDKKMIASLLNPNNITQHKRRGYEEMDHSTHMMMSKCNEGEDDERFKIYKLY VGISLKVFHYLQHSGVKLSNQLLQAVRNWFSHDPCYHWTWKTCKVSVIGMCYNCGNQLTCGISPSDISHLESEIIKLSCH VEEDVPLFQGKKLDKRACQELEDFKDFVKRKGPFDIIIDGLNVGLHGSKANRHNMVFSMDRIEETIKHFASRKKKVLLII RHEALVRNNAEVLITNLDKVCSIYANMFSNDDLYLLYAAAFSGMQHVQIVTNDRLRDHRLLLPVALWWIFLRWTRLNCVS FTSKGNGKLSFVTQKFDPVVQRAGKSWHFPSEDGTWRCASRTARSFKDV |
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