Gene
Gene Model ID | ahya_s0011.g181 |
---|---|
Locus | sc0000011 : 3836612 ... 3842060 : - |
To GenomeBrowser | sc0000011:3836612..3842060 |
Genes list of scaffold | sc0000011 |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
ahya_s0011.g181.t1 | 2 | 1 | Calreticulin | 16 | 251 | 0.0 | 284.0 | 0.0 | 0.0 | 210.4 |
ahya_s0011.g181.t1 | 2 | 2 | Calreticulin | 253 | 326 | 0.0 | 284.0 | 9.7e-29 | 7.9e-25 | 87.4 |
Results of InterPro Scan
Gene Model ID | Analysis | Start | End | i_acc | i_desc | GO | Pathway |
---|---|---|---|---|---|---|---|
ahya_s0011.g181.t1 | PIRSF | 1 | 403 | IPR009169 | Calreticulin | GO:0005509|GO:0005783|GO:00... | |
ahya_s0011.g181.t1 | PANTHER | 7 | 405 | ||||
ahya_s0011.g181.t1 | PANTHER | 7 | 405 | IPR001580 | Calreticulin/calnexin | GO:0005509|GO:0005783|GO:00... | |
ahya_s0011.g181.t1 | Gene3D | 7 | 341 | ||||
ahya_s0011.g181.t1 | SUPERFAMILY | 13 | 212 | IPR013320 | Concanavalin A-like lectin/... | ||
ahya_s0011.g181.t1 | Pfam | 16 | 251 | IPR001580 | Calreticulin/calnexin | GO:0005509|GO:0005783|GO:00... | |
ahya_s0011.g181.t1 | ProSitePatterns | 92 | 107 | IPR018124 | Calreticulin/calnexin, cons... | GO:0005509 | |
ahya_s0011.g181.t1 | PRINTS | 94 | 112 | IPR001580 | Calreticulin/calnexin | GO:0005509|GO:0005783|GO:00... | |
ahya_s0011.g181.t1 | PRINTS | 120 | 136 | IPR001580 | Calreticulin/calnexin | GO:0005509|GO:0005783|GO:00... | |
ahya_s0011.g181.t1 | ProSitePatterns | 124 | 132 | IPR018124 | Calreticulin/calnexin, cons... | GO:0005509 | |
ahya_s0011.g181.t1 | SUPERFAMILY | 195 | 309 | IPR009033 | Calreticulin/calnexin, P do... | GO:0005509|GO:0005515 | |
ahya_s0011.g181.t1 | MobiDBLite | 196 | 290 | ||||
ahya_s0011.g181.t1 | PRINTS | 209 | 222 | IPR001580 | Calreticulin/calnexin | GO:0005509|GO:0005783|GO:00... | |
ahya_s0011.g181.t1 | ProSitePatterns | 236 | 248 | IPR018124 | Calreticulin/calnexin, cons... | GO:0005509 | |
ahya_s0011.g181.t1 | PRINTS | 236 | 258 | IPR001580 | Calreticulin/calnexin | GO:0005509|GO:0005783|GO:00... | |
ahya_s0011.g181.t1 | Pfam | 253 | 326 | IPR001580 | Calreticulin/calnexin | GO:0005509|GO:0005783|GO:00... | |
ahya_s0011.g181.t1 | PRINTS | 274 | 293 | IPR001580 | Calreticulin/calnexin | GO:0005509|GO:0005783|GO:00... | |
ahya_s0011.g181.t1 | PRINTS | 307 | 327 | IPR001580 | Calreticulin/calnexin | GO:0005509|GO:0005783|GO:00... | |
ahya_s0011.g181.t1 | MobiDBLite | 339 | 440 | ||||
ahya_s0011.g181.t1 | Coils | 344 | 401 | ||||
ahya_s0011.g181.t1 | PANTHER | 390 | 440 | ||||
ahya_s0011.g181.t1 | PANTHER | 390 | 440 | IPR001580 | Calreticulin/calnexin | GO:0005509|GO:0005783|GO:00... | |
ahya_s0011.g181.t1 | PIRSF | 390 | 440 | IPR009169 | Calreticulin | GO:0005509|GO:0005783|GO:00... |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
ahya_s0011.g181.t1 | sp|P14211|CALR_MOUSE | Calreticulin | 0.0 |
ahya_s0011.g181.t1 | sp|P18418|CALR_RAT | Calreticulin | 0.0 |
ahya_s0011.g181.t1 | sp|P15253|CALR_RABIT | Calreticulin | 0.0 |
ahya_s0011.g181.t1 | sp|P28491|CALR_PIG | Calreticulin | 0.0 |
ahya_s0011.g181.t1 | sp|Q8K3H7|CALR_CRIGR | Calreticulin | 0.0 |
Transcript
Transcript ID | ahya_s0011.g181.t1 |
---|---|
Definition | - |
>ahya_s0011.g181.t1 cttattagtcacatgatgcaattttaccaatcagagctcaccacgcagaaggccggttcaactgtattcaattcacatgg ttgctgctgcactgccgtagtagctttgttgaaggatttgtttgaggtggaatctgaaaggctgtattcctaaaattatg gcgttttgtcgatttctttttatggttttagtctcttgtgttttagcggaagacccaaaaatttacttcgttgagaaatt cgaagatgagagttacacggacagatgggttgaatccaccttcaaaggcagtgacgctgggaaattcaagtggtcggctg gaaaattctacaacgatgctgatctagacaaaggtatacaaactagtcaagatgctaaattttacggtctctctgctaaa ttcgatgaacctttctcaaacgaaggcaaaacactggttatacagtttcaagtgaaacacgaacaaaccattgactgcgg tggtggatatgttaaggtgtttgatagttcccttgaccagaaacaaatgcatggtgattctccgtaccttatcatgtttg ggccagatatctgtggaccgggtacaaagaaagttcatgttattttcaactacaaaggaaagaacttacttacaaacaaa gatatcaggtgcaaggatgatgaattcacacatctgtacaccctcatcgttaaatctgataatacatacgaagttcgtat tgatggctctaaagtggaaagtggagagcttgaagctgattgggacttcttgccaccaaagaagatcaaagacccaaagg ccaagaagcctgaagattgggatgacaacaaaaaaattgatgatcccgaagacaaaaaaccagaggactgggataagccc caacacattccagatcctgatgcaaagaaaccagatgactgggatgatgaaattgatggcgaatgggaaccgccaatgat tgataacccagactacaagggtgaatggaaacccaagcaaattgacaatcccaactacaaaggtgaatgggttcatccag aaattgataacccagagtatcaacctgatgagtcgctgtacaaatatgatgacattggtgctctaggttttgatttatgg caggtgaaatcgggaactatttttgataatgttctagtaactgattcagttgattatgctgaaacatttgctaaggaaac tttcgaaaaaactaaggaaggtgaaaagaaaatgaaggatgaacaagatgagaaagaacgtaaagagcgagaggaagaag agaagaaggcgaaagaagaggaagaaaaaaagaaagcagaagaggaagaggaggaggaagaggaagaggaggaggaagaa agcaaagatggtgagaagtctgaagaagcaggaactgaagaagaacctaaagaagaagcttcaagcgaagaacccaccag tgaagaacctactagtgaagaagataaaacaacggaagaagcttctaccaaagatgaactttaattgaatcactacatct agggtttttaataaaagcaaagaacttaataagagcaatccacaagttagaacttataagctggatttaacttgttatat ggtatttctggtgtcttgtttctttccttttttttccaatgcctgggccctatctcccaaggtacatcaccttcataatc aatgcaaaagaaaactattttgtttcattctgcaacagtgcataatttctcttctcttgatgtacctttcccttagtaac ccaaccatttggtattccatcttacaacaaagtaccttgtttaagtaatggtactgttaatatcttgtgcagtaaaacaa taaaaacacttttgctaattttatattattcataggaaaaagcatctgttggtgctttttgtagataaatggtggaagcc aacttgtcaaactgacttgacactgaaagggtatttttgtgttatgtgggcttaacattgtgttttattgattcttctct atgggttgaggttatgtttataaacatttacagtttctaatgttgcatggatgtgctgtgaccattctgtctgtaatagt tactgttgtagatgttattttcccatgagtaatgacactgacataagccaatttttgaaaggtgggttgccaataatttt taaaatgggatctccaaggacaaagatgttttgagttaaatgatggttgctcagcaatgagggtagactatgaaacaatt ttcaatgttcatggtgggaacaggtaacttgcatgatggtgtttttctatggagacaagaatgctttgtcaaaatgcttt cttaatcaaatttgttttctctcttgtgaattattgtggaaagtagcttgacaagagaggccactaacatggtagtgaaa tgccatcatgcaaatggcctattaaccggaatctaatgctgatgagatgctctaaccattgcccgccgagagctccttgt aagctaggtgacttaattaacagtgtacctttttgcaccaggagtttctgaaaggatctctgaaaggaaatctattcagt tgttccttcaccagttgcaaagcaacccttgttaacattaatcatgcacaagtgcattcagtgcttgtccatcttttgta aaatggtgttttgagcatctgggaattcaagtgcttatatgtacctttcttgaaagattgttttgacagggtttaattca aggccaatgtggaagcacacttggggcaagtagtaatgggaaagttaatctttaactgtcctttgttgttattaccccaa gcagtgctttctgtactttgagttctttttgttttgtgaaaagtcatttgcctttttccccccatctgttgcagcttagg ttatgagcaaagcacttgattcattaaaatcaagccattcaa |
Protein
Protein ID | ahya_s0011.g181.t1 |
---|---|
Definition | - |
>ahya_s0011.g181.t1 MVLVSCVLAEDPKIYFVEKFEDESYTDRWVESTFKGSDAGKFKWSAGKFYNDADLDKGIQTSQDAKFYGLSAKFDEPFSN EGKTLVIQFQVKHEQTIDCGGGYVKVFDSSLDQKQMHGDSPYLIMFGPDICGPGTKKVHVIFNYKGKNLLTNKDIRCKDD EFTHLYTLIVKSDNTYEVRIDGSKVESGELEADWDFLPPKKIKDPKAKKPEDWDDNKKIDDPEDKKPEDWDKPQHIPDPD AKKPDDWDDEIDGEWEPPMIDNPDYKGEWKPKQIDNPNYKGEWVHPEIDNPEYQPDESLYKYDDIGALGFDLWQVKSGTI FDNVLVTDSVDYAETFAKETFEKTKEGEKKMKDEQDEKERKEREEEEKKAKEEEEKKKAEEEEEEEEEEEEEESKDGEKS EEAGTEEEPKEEASSEEPTSEEPTSEEDKTTEEASTKDEL |