Gene
| Gene Model ID | ahya_s0011.g186 |
|---|---|
| Locus | sc0000011 : 3884892 ... 3892530 : - |
| To GenomeBrowser | sc0000011:3884892..3892530 |
| Genes list of scaffold | sc0000011 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| ahya_s0011.g186.t1 | 1 | 1 | ubiquitin | 3 | 76 | 6.2e-18 | 64.2 | 5.6e-21 | 9.1e-18 | 63.6 |
| ahya_s0011.g186.t1 | 2 | 1 | UBA | 159 | 194 | 2.2e-25 | 88.0 | 5.1e-18 | 8.3e-15 | 54.2 |
| ahya_s0011.g186.t1 | 1 | 1 | XPC-binding | 233 | 288 | 1.5e-22 | 78.9 | 1.5e-25 | 2.5e-22 | 78.3 |
| ahya_s0011.g186.t1 | 2 | 2 | UBA | 329 | 363 | 2.2e-25 | 88.0 | 6.1e-12 | 9.9e-09 | 34.8 |
Results of InterPro Scan
| Gene Model ID | Analysis | Start | End | i_acc | i_desc | GO | Pathway |
|---|---|---|---|---|---|---|---|
| ahya_s0011.g186.t1 | ProSiteProfiles | 1 | 79 | IPR000626 | Ubiquitin domain | GO:0005515 | |
| ahya_s0011.g186.t1 | PANTHER | 1 | 370 | ||||
| ahya_s0011.g186.t1 | TIGRFAM | 1 | 371 | IPR004806 | UV excision repair protein ... | GO:0005634|GO:0006289 | Reactome: R-HSA-5689877|Reactome: R-HSA-5696394|Reactome: R-HSA-5696395 |
| ahya_s0011.g186.t1 | PANTHER | 1 | 370 | ||||
| ahya_s0011.g186.t1 | SUPERFAMILY | 1 | 90 | IPR029071 | Ubiquitin-like domain super... | ||
| ahya_s0011.g186.t1 | Gene3D | 1 | 128 | ||||
| ahya_s0011.g186.t1 | SMART | 1 | 75 | IPR000626 | Ubiquitin domain | GO:0005515 | |
| ahya_s0011.g186.t1 | CDD | 1 | 78 | ||||
| ahya_s0011.g186.t1 | Pfam | 3 | 76 | IPR000626 | Ubiquitin domain | GO:0005515 | |
| ahya_s0011.g186.t1 | MobiDBLite | 79 | 144 | ||||
| ahya_s0011.g186.t1 | SUPERFAMILY | 144 | 200 | IPR009060 | UBA-like superfamily | GO:0005515 | |
| ahya_s0011.g186.t1 | Gene3D | 156 | 226 | ||||
| ahya_s0011.g186.t1 | ProSiteProfiles | 157 | 197 | IPR015940 | Ubiquitin-associated domain | ||
| ahya_s0011.g186.t1 | CDD | 158 | 197 | ||||
| ahya_s0011.g186.t1 | Pfam | 159 | 194 | IPR015940 | Ubiquitin-associated domain | ||
| ahya_s0011.g186.t1 | SMART | 159 | 196 | IPR015940 | Ubiquitin-associated domain | ||
| ahya_s0011.g186.t1 | MobiDBLite | 197 | 232 | ||||
| ahya_s0011.g186.t1 | Gene3D | 228 | 287 | ||||
| ahya_s0011.g186.t1 | SUPERFAMILY | 229 | 294 | IPR036353 | XPC-binding domain superfamily | GO:0003684|GO:0006289|GO:00... | Reactome: R-HSA-5689877|Reactome: R-HSA-5696394|Reactome: R-HSA-5696395 |
| ahya_s0011.g186.t1 | Pfam | 233 | 288 | IPR015360 | XPC-binding domain | GO:0003684|GO:0006289|GO:00... | Reactome: R-HSA-5689877|Reactome: R-HSA-5696394|Reactome: R-HSA-5696395 |
| ahya_s0011.g186.t1 | PRINTS | 259 | 281 | IPR004806 | UV excision repair protein ... | GO:0005634|GO:0006289 | Reactome: R-HSA-5689877|Reactome: R-HSA-5696394|Reactome: R-HSA-5696395 |
| ahya_s0011.g186.t1 | MobiDBLite | 288 | 325 | ||||
| ahya_s0011.g186.t1 | Gene3D | 297 | 371 | ||||
| ahya_s0011.g186.t1 | SUPERFAMILY | 321 | 369 | IPR009060 | UBA-like superfamily | GO:0005515 | |
| ahya_s0011.g186.t1 | PRINTS | 322 | 338 | IPR004806 | UV excision repair protein ... | GO:0005634|GO:0006289 | Reactome: R-HSA-5689877|Reactome: R-HSA-5696394|Reactome: R-HSA-5696395 |
| ahya_s0011.g186.t1 | ProSiteProfiles | 325 | 366 | IPR015940 | Ubiquitin-associated domain | ||
| ahya_s0011.g186.t1 | CDD | 327 | 364 | ||||
| ahya_s0011.g186.t1 | SMART | 328 | 365 | IPR015940 | Ubiquitin-associated domain | ||
| ahya_s0011.g186.t1 | Pfam | 329 | 363 | IPR015940 | Ubiquitin-associated domain | ||
| ahya_s0011.g186.t1 | PRINTS | 339 | 353 | IPR004806 | UV excision repair protein ... | GO:0005634|GO:0006289 | Reactome: R-HSA-5689877|Reactome: R-HSA-5696394|Reactome: R-HSA-5696395 |
| ahya_s0011.g186.t1 | PRINTS | 354 | 369 | IPR004806 | UV excision repair protein ... | GO:0005634|GO:0006289 | Reactome: R-HSA-5689877|Reactome: R-HSA-5696394|Reactome: R-HSA-5696395 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| ahya_s0011.g186.t1 | sp|P54727|RD23B_HUMAN | UV excision repair protein RAD23 homolog B | 0.0 |
| ahya_s0011.g186.t1 | sp|P54728|RD23B_MOUSE | UV excision repair protein RAD23 homolog B | 0.0 |
| ahya_s0011.g186.t1 | sp|Q29RK4|RD23B_BOVIN | UV excision repair protein RAD23 homolog B | 0.0 |
| ahya_s0011.g186.t1 | sp|A3KMV2|RD23A_BOVIN | UV excision repair protein RAD23 homolog A | 0.0 |
| ahya_s0011.g186.t1 | sp|Q4KMA2|RD23B_RAT | UV excision repair protein RAD23 homolog B | 0.0 |
Transcript
| Transcript ID | ahya_s0011.g186.t1 |
|---|---|
| Definition | - |
>ahya_s0011.g186.t1 cgcagaagtctcgcaagtgaggtgacgtcagttgtttcaagattgcacgcatcagatgcttgggcttcagtcatctgaga gatttattgaattttactgggtacttctaaggatacaactcctttctggaactacaaatccgtttcaactaagcgttcaa tatgattataacgtttaaaacgcttcaacatcagacgtttaagctagaaatcgaggaaagtgcaacggtagtggatctaa aaaacaaactggaaactgagaaaggaaaagatgcatacccaaaagctggtgtgaaacttatatatgctggtaaaatactt aatgatgatcagcccttatctacatacaaaatagatgagaaaggtttcgttgttgttatggtgacaaagccaaaggtcac atcaactccagcccctagtcagcctgccacaacaccacaggcaacttcagttgcaagcacagacactacagcaagatctg gtgatgacagtaagccagaaagtactgatgcccctccatcagctgcagaagagcctgcatccacaacaactcctacagta tcaacatctgcggcatcatcaggtgttgagcaagcactttccacagctgagtctacacttgtgactggtgcggcttatga aacaatggtaactgaaatgactaacatgggatttgaaagagatcaggttgtaagagcactaagggcaagcttcaacaatc cagacagagcagttgaatacttaatgactggaatacctgagttaccaccagatccacaagctccaacagaaggtgaagaa ccacaacaacaaccaggagagcaagggggtgaggaaccagtatcaggaggatcagctcttgacttcctgcgctctcaacc tcagttcattagtctcaggagaatggttcaacaaaatccccaaagtttacccctattactacagcaacttgggcaagcaa atcctcagctcctacagcgaattagtgacaatcaagaacagtttatagcaatgctaaatgaaccagcaccagaccaggct ccctctgccgggtcacagcaacctcaacctcaacctcaacctcagcccggagcaggggacgatcagcctcgaggagttat gactataaacgtgacaactcaagaaaaagaagctatcgaaaggctcaaagatcttggattttccgaacaacaggcggctg aagcttactttgcgtgtgaaaagaatgaaacactggcggcaaactttttactcaacgacttcaacgacgatgaataaaat ttcgagagaagaggtcctgttaaaatgacttttttatatttggacaagcgctaactgtaccaaattgggtcatggctgtg tcgaatgactggggtttcttccttgattttgtttgcaaatagtactcggtgttagttgtctattcaatataattattatt cagctacgattgtgacaacatctaacggaataattatcactgttataattttgccgatattttgtttattcctggtaatt taaatgtagtgtgaattgtacgactgtgttcacacaaaccgtaacttaattggcttgtctcatccgatgacttagttagc ttacagggccagccggccatcaatcacagcattcgattacaaaatcaaagatggattcttctcagagagaattttacagg cgaagagatgcgagtacaaggaatgaagttgttgcagtggaaaatctcctctggaccgaaacaaaacaaagtgacattta gtttaaaatgtggcttaagcgcaatttaaattcctcaccttaaagtgcaattttgctttaatacagtactgctgctaagt ttatggttaaaactctgtagcacggaggtaggaatgtcactgaagctcgcttcgctgtgacacagctgttacagcgttgt gaaaactgtcacgctgcgtgactctagccttgccacaaattaaatgaccaacagttttaaagaggacttgttcgcttgag aacttaggaagggatcctcttcgaagggtgggcttcacagttcaaccgctaaaacgaagcttactcttttgtacatctct gcgcagttcgaacagttcaacagtgtaagccgaaaaacgcttgtgggtatagtgctacagctttttctgctattctcacc tttgcctgagaggtcggagggattaatgtcaaaacaagtttaaatctgctgtttaaaatcttctatcttttgcgtggttg ctctcaactgcgctgcttcgtcttttcttctttgcaaatccttgtaccccatcgaagaggaagtgagagggaaccgacct tcttccttactgcttgtcggaggaaagagttctacttttcgacgacgagcatttctatgttgcaagttgcaattcctagg acaaagattgctaaat |
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Protein
| Protein ID | ahya_s0011.g186.t1 |
|---|---|
| Definition | - |
>ahya_s0011.g186.t1 MIITFKTLQHQTFKLEIEESATVVDLKNKLETEKGKDAYPKAGVKLIYAGKILNDDQPLSTYKIDEKGFVVVMVTKPKVT STPAPSQPATTPQATSVASTDTTARSGDDSKPESTDAPPSAAEEPASTTTPTVSTSAASSGVEQALSTAESTLVTGAAYE TMVTEMTNMGFERDQVVRALRASFNNPDRAVEYLMTGIPELPPDPQAPTEGEEPQQQPGEQGGEEPVSGGSALDFLRSQP QFISLRRMVQQNPQSLPLLLQQLGQANPQLLQRISDNQEQFIAMLNEPAPDQAPSAGSQQPQPQPQPQPGAGDDQPRGVM TINVTTQEKEAIERLKDLGFSEQQAAEAYFACEKNETLAANFLLNDFNDDE |
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