Gene
| Gene Model ID | ahya_s0011.g218 |
|---|---|
| Locus | sc0000011 : 4180769 ... 4192192 : + |
| To GenomeBrowser | sc0000011:4180769..4192192 |
| Genes list of scaffold | sc0000011 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| ahya_s0011.g218.t1 | 1 | 1 | DUF3808 | 23 | 483 | 0.0 | 397.6 | 0.0 | 0.0 | 397.0 |
Results of InterPro Scan
| Gene Model ID | Analysis | Start | End | i_acc | i_desc | GO | Pathway |
|---|---|---|---|---|---|---|---|
| ahya_s0011.g218.t1 | PANTHER | 11 | 563 | IPR019412 | Outer membrane protein Iml... | ||
| ahya_s0011.g218.t1 | PANTHER | 11 | 563 | ||||
| ahya_s0011.g218.t1 | Pfam | 23 | 483 | IPR019412 | Outer membrane protein Iml... | ||
| ahya_s0011.g218.t1 | SMART | 54 | 87 | IPR019734 | Tetratricopeptide repeat | GO:0005515 | |
| ahya_s0011.g218.t1 | Gene3D | 56 | 172 | IPR011990 | Tetratricopeptide-like heli... | GO:0005515 | |
| ahya_s0011.g218.t1 | Gene3D | 251 | 572 | IPR011990 | Tetratricopeptide-like heli... | GO:0005515 | |
| ahya_s0011.g218.t1 | SUPERFAMILY | 271 | 351 | IPR011990 | Tetratricopeptide-like heli... | GO:0005515 | |
| ahya_s0011.g218.t1 | SMART | 274 | 307 | IPR019734 | Tetratricopeptide repeat | GO:0005515 | |
| ahya_s0011.g218.t1 | SMART | 470 | 503 | IPR019734 | Tetratricopeptide repeat | GO:0005515 | |
| ahya_s0011.g218.t1 | SUPERFAMILY | 476 | 547 | IPR011990 | Tetratricopeptide-like heli... | GO:0005515 | |
| ahya_s0011.g218.t1 | SMART | 511 | 544 | IPR019734 | Tetratricopeptide repeat | GO:0005515 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| ahya_s0011.g218.t1 | sp|D3ZC96|TT39B_RAT | Tetratricopeptide repeat protein 39B | 0.0 |
Transcript
| Transcript ID | ahya_s0011.g218.t1 |
|---|---|
| Definition | - |
>ahya_s0011.g218.t1 ctactttttcacgttgtactttgattactgccccttgtcaatggggcagtaattcaggtgaaaaaagcgaaaaatattgc gaaaaggattgcctgcaaaggctaaagtggacagcaacacaatggataaaacaagcaggagtaaaagttctttgtctgtg gcaaaagccatcccaatgatcaacagaactgctgaactttgcttcaggaacaacttcattcaagcaaagaaggagcttga accatgggttgaccaaagcatgtatcatgcacttgcatacagtggtattatgtgcattcaagctctcctcaaatttgaac aacaagcaatacaaagggctgctaagagcatcaaagatgctctgaatctttgtcagagacacagaaagaagcccaggtgg tcagaaacattgtcaaattggatttggagtcctacctatgataacttgactgaagaagaaaagcatgcggagctctgcta tgctgaatgtcttcttcttgattctcttatcacctttattcaggatgaaaatgttctcagttttgtttggggagcattca aagttcgcagtagttatcagagttacaagatttgtcttgatatggttgtaaatcaaccttttgcttcagcacacaccatg gaaacaaatgaatttgaaggaggaatacactttggtattggaggattcaacttggttttgtcgttacttccaccaatcat cataaagttgttagagtgggttggattttctggagacaggtttttagggattagtcacttgcaaaagggaagcaaatgtc agagtctgaggtccccattatgttctttggttttactggcttatcatgtttggatcactcagtatcttggtaatggtgac ggagatgtgcaagcatcagaggaaattcttcagccactcctctctgcatttccaaagggttctgtctttttattttttga tggtagactaaaacatgtgcatggaaaactagatgaggctattaatagatacaagcattccatcacagttcagtcagaca ttaggcagttgcatcacttcttttactgggagctcatgtggtgttatgcgtttaaaggagactggtttgaagcctatcgc tatgccagcattttatttaatgagagcctgtggtcaaggactgtatacatgcatctcaaggcttcctttaaagttatgga cagacttgtaaaccagaaagagacaatgggacaagatgaagaagagcaagatagggaagactacatgtttaggcggctcc cagatttcaaacagcgtattggtggtcagagtctcccaattgaggactttgctattcacaaagcaaagaaatactttgac aaaaatggcggcttatttcttcctggattggaacttgtttatatttggaatggttttaaagtgcttaataataggcctga tttagtaaaacctataaaagagttggtggaacattctttgcatcaacttaagctgacaaaagatcaaaaaagttatgcag atgacttgtgtttgggtagactgctcctaggaatgtgttatcgttgtttggatcagaaagcagaagctctggaatgtttg agaagtgcttatagtcagtctaaatacctgaaagatgatttttacttagaaccttacacgtgtgcagaaatgggcttcct ttgtctggatgatggagactttgacatggcaaaagaatacttggaaagggcaaggaagcatcgtgatcatcttttacgaa gtcttctgcacttgagaatccatggcgcattgcagaaaatggagcatgctcacattgagaaagggcgtactcggtcactc aataacaaagtttttcaaataaagaaaggacttgcagcagatggagataatatttcgttttcaggaagtgaagatgattt ttttgatgctgtagatgactgttcaaaattgcttcgtcaagactcaaattcatcatttgatgttatatcagatgatgagc ttgatttcttataaaattatgtttcaaaaaagctctttagagaaaaataatattatttctccattattctggatggcgag tgaaaacttgggggcattcacagtgtagctgtaaaccattactagttattcaatacattgtgcaaagtcacgtcctgttt tacaccagcatttattaattttttactataacatgccatgagaaaagatgttatcctttcattccaaataaattacaatt caaata |
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Protein
| Protein ID | ahya_s0011.g218.t1 |
|---|---|
| Definition | - |
>ahya_s0011.g218.t1 MDKTSRSKSSLSVAKAIPMINRTAELCFRNNFIQAKKELEPWVDQSMYHALAYSGIMCIQALLKFEQQAIQRAAKSIKDA LNLCQRHRKKPRWSETLSNWIWSPTYDNLTEEEKHAELCYAECLLLDSLITFIQDENVLSFVWGAFKVRSSYQSYKICLD MVVNQPFASAHTMETNEFEGGIHFGIGGFNLVLSLLPPIIIKLLEWVGFSGDRFLGISHLQKGSKCQSLRSPLCSLVLLA YHVWITQYLGNGDGDVQASEEILQPLLSAFPKGSVFLFFDGRLKHVHGKLDEAINRYKHSITVQSDIRQLHHFFYWELMW CYAFKGDWFEAYRYASILFNESLWSRTVYMHLKASFKVMDRLVNQKETMGQDEEEQDREDYMFRRLPDFKQRIGGQSLPI EDFAIHKAKKYFDKNGGLFLPGLELVYIWNGFKVLNNRPDLVKPIKELVEHSLHQLKLTKDQKSYADDLCLGRLLLGMCY RCLDQKAEALECLRSAYSQSKYLKDDFYLEPYTCAEMGFLCLDDGDFDMAKEYLERARKHRDHLLRSLLHLRIHGALQKM EHAHIEKGRTRSLNNKVFQIKKGLAADGDNISFSGSEDDFFDAVDDCSKLLRQDSNSSFDVISDDELDFL |
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