Gene
| Gene Model ID | ahya_s0011.g22 |
|---|---|
| Locus | sc0000011 : 449084 ... 452745 : - |
| To GenomeBrowser | sc0000011:449084..452745 |
| Genes list of scaffold | sc0000011 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| ahya_s0011.g22.t1 | 1 | 1 | zf-C4 | 11 | 81 | 2.1e-28 | 98.5 | 4.1e-32 | 3.3e-28 | 97.8 |
| ahya_s0011.g22.t1 | 1 | 1 | Hormone_recep | 155 | 335 | 1.7e-31 | 109.0 | 3.5e-35 | 2.9e-31 | 108.2 |
Results of InterPro Scan
| Gene Model ID | Analysis | Start | End | i_acc | i_desc | GO | Pathway |
|---|---|---|---|---|---|---|---|
| ahya_s0011.g22.t1 | Gene3D | 4 | 74 | IPR013088 | Zinc finger, NHR/GATA-type | GO:0006355|GO:0008270 | |
| ahya_s0011.g22.t1 | ProSiteProfiles | 9 | 87 | IPR001628 | Zinc finger, nuclear hormon... | GO:0003700|GO:0005634|GO:00... | Reactome: R-HSA-383280 |
| ahya_s0011.g22.t1 | PANTHER | 9 | 353 | ||||
| ahya_s0011.g22.t1 | SMART | 9 | 83 | IPR001628 | Zinc finger, nuclear hormon... | GO:0003700|GO:0005634|GO:00... | Reactome: R-HSA-383280 |
| ahya_s0011.g22.t1 | PANTHER | 9 | 353 | ||||
| ahya_s0011.g22.t1 | SUPERFAMILY | 10 | 98 | ||||
| ahya_s0011.g22.t1 | Pfam | 11 | 81 | IPR001628 | Zinc finger, nuclear hormon... | GO:0003700|GO:0005634|GO:00... | Reactome: R-HSA-383280 |
| ahya_s0011.g22.t1 | CDD | 12 | 86 | ||||
| ahya_s0011.g22.t1 | PRINTS | 12 | 28 | IPR001628 | Zinc finger, nuclear hormon... | GO:0003700|GO:0005634|GO:00... | Reactome: R-HSA-383280 |
| ahya_s0011.g22.t1 | ProSitePatterns | 12 | 38 | IPR001628 | Zinc finger, nuclear hormon... | GO:0003700|GO:0005634|GO:00... | Reactome: R-HSA-383280 |
| ahya_s0011.g22.t1 | PRINTS | 28 | 43 | IPR001628 | Zinc finger, nuclear hormon... | GO:0003700|GO:0005634|GO:00... | Reactome: R-HSA-383280 |
| ahya_s0011.g22.t1 | PRINTS | 38 | 49 | IPR001728 | Thyroid hormone receptor | GO:0003677|GO:0004887|GO:00... | Reactome: R-HSA-383280 |
| ahya_s0011.g22.t1 | PRINTS | 64 | 72 | IPR001628 | Zinc finger, nuclear hormon... | GO:0003700|GO:0005634|GO:00... | Reactome: R-HSA-383280 |
| ahya_s0011.g22.t1 | PRINTS | 72 | 80 | IPR001628 | Zinc finger, nuclear hormon... | GO:0003700|GO:0005634|GO:00... | Reactome: R-HSA-383280 |
| ahya_s0011.g22.t1 | Gene3D | 75 | 356 | IPR035500 | Nuclear hormone receptor-li... | Reactome: R-HSA-383280 | |
| ahya_s0011.g22.t1 | PRINTS | 76 | 86 | IPR001723 | Nuclear hormone receptor | GO:0003677|GO:0003707|GO:00... | Reactome: R-HSA-383280 |
| ahya_s0011.g22.t1 | SUPERFAMILY | 109 | 354 | IPR035500 | Nuclear hormone receptor-li... | Reactome: R-HSA-383280 | |
| ahya_s0011.g22.t1 | MobiDBLite | 140 | 159 | ||||
| ahya_s0011.g22.t1 | Pfam | 158 | 334 | IPR000536 | Nuclear hormone receptor, l... | GO:0006355|GO:0043401 | Reactome: R-HSA-383280 |
| ahya_s0011.g22.t1 | PRINTS | 165 | 186 | IPR001728 | Thyroid hormone receptor | GO:0003677|GO:0004887|GO:00... | Reactome: R-HSA-383280 |
| ahya_s0011.g22.t1 | SMART | 167 | 325 | IPR000536 | Nuclear hormone receptor, l... | GO:0006355|GO:0043401 | Reactome: R-HSA-383280 |
| ahya_s0011.g22.t1 | PRINTS | 168 | 189 | IPR001723 | Nuclear hormone receptor | GO:0003677|GO:0003707|GO:00... | Reactome: R-HSA-383280 |
| ahya_s0011.g22.t1 | PRINTS | 189 | 205 | IPR001723 | Nuclear hormone receptor | GO:0003677|GO:0003707|GO:00... | Reactome: R-HSA-383280 |
| ahya_s0011.g22.t1 | PRINTS | 191 | 210 | IPR001728 | Thyroid hormone receptor | GO:0003677|GO:0004887|GO:00... | Reactome: R-HSA-383280 |
| ahya_s0011.g22.t1 | PRINTS | 256 | 278 | IPR001728 | Thyroid hormone receptor | GO:0003677|GO:0004887|GO:00... | Reactome: R-HSA-383280 |
| ahya_s0011.g22.t1 | PRINTS | 256 | 271 | IPR001723 | Nuclear hormone receptor | GO:0003677|GO:0003707|GO:00... | Reactome: R-HSA-383280 |
| ahya_s0011.g22.t1 | PRINTS | 313 | 330 | IPR001723 | Nuclear hormone receptor | GO:0003677|GO:0003707|GO:00... | Reactome: R-HSA-383280 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| ahya_s0011.g22.t1 | sp|Q6DHP9|RXRGB_DANRE | Retinoic acid receptor RXR-gamma-B | 0.0 |
| ahya_s0011.g22.t1 | sp|Q90416|RXRGA_DANRE | Retinoic acid receptor RXR-gamma-A | 0.0 |
Transcript
| Transcript ID | ahya_s0011.g22.t1 |
|---|---|
| Definition | - |
>ahya_s0011.g22.t1 tttaaattatcttgcagcctgtgggtgagtgttgaatataccgttgaaatacggaaaacatttggtaaaatttaatggtc gcagatcggcaaagaaaaaaaatggtgcgttttcttgatgagaacaataaacggtgtgtcataccgggaatttgtggtca aataacggaaaggagagaaatatagctaatgacgtcatcgtctgtgatactgcgtgactctagtgagaacctcaaaaatt tcataagtttcattgtcgtctgtgaaagttagacatctctgtacagagggagaagttcgacaatttcatacaatttctct tcgaaacacaagccacccttaaaatgggaattaagttattttttctaaacgtatgtcacttttcacaatttcacgctcta aagtgaaagttgccaatacaaaagcagcaactaaagcactcgaactaatatgacttcataacgacgcaattacgttcacc ccttagctagaaacgaggaacgtttcaagatgtcagaagaggacgacgagagcgaaaaatggtgtgctgtttgcagtgat agttcatccggctaccattacggagcgaatacttgtgaaggatgtaagagtttcttcaaaaggacagtgcagaaaaattt aggtggtaaatacgaatgtgtaaagtccacagatgactgctccgttgacaaggagtcgcgggccaagtgccaggcttgta ggctcaaaaagtgcttatcggtcggtatggtggcagaaggagtaagaaaggagaagaagcgtggtggaagatcattttac cctttgaagaaacagaaagtaataattgatgctgaacaaactcaagcttcttcagaacaagatgtaccaaaaacgatcac atattgctctgaactaattgaaaatttaatgaacagcagtccatgtattgttccaccaggtcaacctccaacggactcac aagatgccgcacaagagagcagggaaggtcaactgacaagactttcaaatgcaattactaaagaattatacttaattgtt gagtgggcaaaactggttccaggttttgatgagctttgtagaacagatcagatagctcttttgactgctggcggcatgga acttattgtctttagagtgatttacaggtctattccctttaaggattatgtctacatgaacagcacaacccttcttctgc ggaaagacagctatgatgtgcttaacaaagaaatcgttgacatgattttagatgtagtggagaggctaaaacctcttgcc atggatgaggtagaatttgcttgcctaaagacaattctcctaactgatccagagacctcaggactttctgacaagctcgc cgttgcaacccttcaaggatcatttctggcagcgctaaaagagcacatggaagccacatatcctgatcagaaaggccgct ttgcaaagcttctgctgcggctaccagccttgcgcgatgtttgtaccaaaggttatcagtacttcttgctggttcgagct aagctagaaggagaaataccaatgtcaactcttttgcaagaaatgtttgagtcagcaaggttttaaagaaaagcaaaaaa caaaaacagcttgcacacgagcatgggcaatatgggagctggtgagccaaagatacaagccatgctaattctaccctagc ccttagaccctcttaagcacgacgttgtcgattatgcagggcaagagtaccccatgcaattaatgaagtaatttaaagga gaaataacaaagaaaattatgttgactaaggtataggaaagcgtcgagttgctaaagcgcgtggagatttgactgttatt ataatgactgttgtgtggaggttttcttatctttattcctcagttttggggaaccttcacaaatattgctttcaaaaata aattattagtatttttaaagttttactgctctttttaaaaatgattatttaaggaatggagaggagaaacttgtttcaca ataattaacactatctctgcaaaagtaaaactgttgttttttgtaacctgtcaggagacacagaaagacaagagatgtgt atatattttttattcatgtgttggcatgaactcctctaccagacacatactttgtaccatgcattcagatgtaaaaatca cttaacaacagaaccaagttgattgaaactgaaaataaaacatagtatcttgcatttccataaactcaatctacttactt tgtgcccagaaacaatgatgattaattagattaaagaatgaaaactgcattgcacagaatagatccaggattgcaagtaa ttcgatgcttgccaattttaataaatggcacaaatccccttgcaaattgaacttatataaatatatttatatattaagaa gctcagttatgcacgcattctgattggttttcacttatgatctattggaggactaacgcattgatgatgaaagcgctcga ttcaagtttgaaagttgcatgattctttgaaccaatcacaattctaagcatagcaaccaatcagtttgtatagacaatag attacgtcaaagtgctattttcgtatctgtcaaaatggcgaaatttgaaataaaattttaaataaaaa |
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Protein
| Protein ID | ahya_s0011.g22.t1 |
|---|---|
| Definition | - |
>ahya_s0011.g22.t1 MSEEDDESEKWCAVCSDSSSGYHYGANTCEGCKSFFKRTVQKNLGGKYECVKSTDDCSVDKESRAKCQACRLKKCLSVGM VAEGVRKEKKRGGRSFYPLKKQKVIIDAEQTQASSEQDVPKTITYCSELIENLMNSSPCIVPPGQPPTDSQDAAQESREG QLTRLSNAITKELYLIVEWAKLVPGFDELCRTDQIALLTAGGMELIVFRVIYRSIPFKDYVYMNSTTLLLRKDSYDVLNK EIVDMILDVVERLKPLAMDEVEFACLKTILLTDPETSGLSDKLAVATLQGSFLAALKEHMEATYPDQKGRFAKLLLRLPA LRDVCTKGYQYFLLVRAKLEGEIPMSTLLQEMFESARF |
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