Gene
| Gene Model ID | ahya_s0011.g221 |
|---|---|
| Locus | sc0000011 : 4232879 ... 4238463 : + |
| To GenomeBrowser | sc0000011:4232879..4238463 |
| Genes list of scaffold | sc0000011 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| ahya_s0011.g221.t1 | 1 | 1 | 7tm_1 | 243 | 495 | 4.1e-17 | 62.2 | 2.5e-20 | 1.0e-16 | 60.9 |
Results of InterPro Scan
| Gene Model ID | Analysis | Start | End | i_acc | i_desc | GO | Pathway |
|---|---|---|---|---|---|---|---|
| ahya_s0011.g221.t1 | PANTHER | 24 | 531 | IPR034298 | TSH/LHCG/FSH receptor | Reactome: R-HSA-375281|Reactome: R-HSA-418555 | |
| ahya_s0011.g221.t1 | PANTHER | 24 | 531 | ||||
| ahya_s0011.g221.t1 | Gene3D | 66 | 177 | IPR032675 | Leucine-rich repeat domain ... | ||
| ahya_s0011.g221.t1 | Gene3D | 219 | 541 | ||||
| ahya_s0011.g221.t1 | SUPERFAMILY | 229 | 520 | ||||
| ahya_s0011.g221.t1 | ProSiteProfiles | 242 | 495 | IPR017452 | GPCR, rhodopsin-like, 7TM | GO:0016021 | |
| ahya_s0011.g221.t1 | Pfam | 243 | 495 | IPR000276 | G protein-coupled receptor,... | GO:0004930|GO:0007186|GO:00... | |
| ahya_s0011.g221.t1 | PRINTS | 261 | 282 | IPR000276 | G protein-coupled receptor,... | GO:0004930|GO:0007186|GO:00... | |
| ahya_s0011.g221.t1 | PRINTS | 309 | 331 | IPR000276 | G protein-coupled receptor,... | GO:0004930|GO:0007186|GO:00... | |
| ahya_s0011.g221.t1 | ProSitePatterns | 315 | 331 | IPR000276 | G protein-coupled receptor,... | GO:0004930|GO:0007186|GO:00... | |
| ahya_s0011.g221.t1 | PRINTS | 345 | 366 | IPR000276 | G protein-coupled receptor,... | GO:0004930|GO:0007186|GO:00... | |
| ahya_s0011.g221.t1 | PRINTS | 434 | 458 | IPR000276 | G protein-coupled receptor,... | GO:0004930|GO:0007186|GO:00... | |
| ahya_s0011.g221.t1 | PRINTS | 477 | 503 | IPR000276 | G protein-coupled receptor,... | GO:0004930|GO:0007186|GO:00... |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| ahya_s0011.g221.t1 | sp|P21463|TSHR_RAT | Thyrotropin receptor | 2.0e-17 |
Transcript
| Transcript ID | ahya_s0011.g221.t1 |
|---|---|
| Definition | - |
>ahya_s0011.g221.t1 cttgaatcagacgtcgaacatattgagacaaggtgcatggatatattgcccgttgctctgtttttcctcatcaactctct cgctccttctctttcaacatctatcgtagagaattgcgtcacgccaacgtgtatttgttcatatgatcttatatataaca taacagctacttgtcgcacaaaggatttgaaaaatgacctccaccgttacatcaagagaccattgttgattggtggaatt acaatcatagacgacaacacaactgtcattccagaacaaacttttacgcagtttgcaaatttaaagtgcttgaagatcaa aataggacttttgaagatatggaagggtaacctctctagagaacttccaacacttgagaccctttatcttgaaacgcgca gtctatttgccattccagaacatgtcctccggtcgccaaagctccaaactatcaatggcgtgacgtggagtaacgcttgc gaaaactgtactttggtcaagaatgaaactcacgaaaatgtcacgcaccttaaaagaggaacatatgactactatccaag gacacgctgtcgcggctcacgattcgtgatagacgatgtgtcgcgcacaattgctggtcatgggtttttaccgatttgtt tgttgacaaatcagcgatgtttttcatctcaaattaccattatccctatgcatcgatgttgggatagtgccaacaatgtt ctctacgttgaatactttttcgctcctttgatactcgttcttaactttatcatattttcaacaacactgacagctaagtc tctgaagaatgtcccaaccatgttattggtctccaacttggcagtcagcgacttcttttacggagtttattctctcgtta ttacttgtttgcgtcatgcaatgtcttaccgaaactttgttggtgctatggatcagctatgtccgtttctcgggtttttg tggtgtagtgttcaagtcgttgcagctctttcagcatttcttcttacagctgaccgatacgtagccatcatcttttcgat gagaccggacatgaagttttcacccaaatcttgcttaatcagtgttaccatatcgtggacgcttgccttactggtagctt ctcttccatttttacgcattggtacctacacctctacaacgttttgtcttccaattcagccagccaaagggattccgcat tcgttcgcatacagcgccagtctcgtggcaattggaatagttttatacataatcactataccaatgtatctgcacatctt tcttcatgtaaggcgctctggaaaccagatgggtatcaaaagagatggtaaactagccaggaagatttctctattggtag ttagcaacttcatgtttttcctactcccagtttttatcggtcttatatggttattcacgaacgctttcgacagtgttcct ctgagcacaagagagattctcgttggttctttcagcatcatttgtctcagtgttaattcattcataaatcctcttcttta cgcgttcagagacaggaggtttctatttgtgatcagaaaaagatatcgccgagtttttcatccaaacagtattgaagttt ttaatactacgtcaagaactgaagctagatctaatcaacatgaaatgaaaaagaggcggtagacaaagcgggctcttccc aatcccaaaacaagggcttttctgttttacatacgactcaggataggctgaaagactgtttcagaatcagcagttaattt cttgtcagtagaaccctgcgttgcattgttgtggtctatttctgggttcctgtttgcctctcgcggtacgcgatcacttg aatggagatgagtttcgtattttcattataaatcaaagtaattctgttttcaacggattggcgttattgggttgaaccag agctaagcagcaactcaaagaaaggttattgggtcgcatgcctaaaatagaatatttctcgatcgttttgactcttgcgc atgcgttttgtcaataactatatacactgatttctcataaaccatcatgttaccacttccgatatttttaatcacgaaag ggtagttatgaactacttccagtcaaatttagttttgtacgagcgtagagtcttcagtcttggcaaattattgtaacgac agaaagtggggtaaatcaaatcttgcatcaaat |
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Protein
| Protein ID | ahya_s0011.g221.t1 |
|---|---|
| Definition | - |
>ahya_s0011.g221.t1 MDILPVALFFLINSLAPSLSTSIVENCVTPTCICSYDLIYNITATCRTKDLKNDLHRYIKRPLLIGGITIIDDNTTVIPE QTFTQFANLKCLKIKIGLLKIWKGNLSRELPTLETLYLETRSLFAIPEHVLRSPKLQTINGVTWSNACENCTLVKNETHE NVTHLKRGTYDYYPRTRCRGSRFVIDDVSRTIAGHGFLPICLLTNQRCFSSQITIIPMHRCWDSANNVLYVEYFFAPLIL VLNFIIFSTTLTAKSLKNVPTMLLVSNLAVSDFFYGVYSLVITCLRHAMSYRNFVGAMDQLCPFLGFLWCSVQVVAALSA FLLTADRYVAIIFSMRPDMKFSPKSCLISVTISWTLALLVASLPFLRIGTYTSTTFCLPIQPAKGIPHSFAYSASLVAIG IVLYIITIPMYLHIFLHVRRSGNQMGIKRDGKLARKISLLVVSNFMFFLLPVFIGLIWLFTNAFDSVPLSTREILVGSFS IICLSVNSFINPLLYAFRDRRFLFVIRKRYRRVFHPNSIEVFNTTSRTEARSNQHEMKKRR |
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