Gene
| Gene Model ID | ahya_s0011.g228 |
|---|---|
| Locus | sc0000011 : 4258039 ... 4265463 : + |
| To GenomeBrowser | sc0000011:4258039..4265463 |
| Genes list of scaffold | sc0000011 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| ahya_s0011.g228.t1 | 1 | 1 | Neur_chan_LBD | 96 | 273 | 6.8e-34 | 117.1 | 1.5e-36 | 8.2e-33 | 113.5 |
| ahya_s0011.g228.t1 | 2 | 1 | Neur_chan_memb | 281 | 417 | 6.8e-25 | 88.4 | 1.3e-25 | 7.2e-22 | 78.5 |
| ahya_s0011.g228.t1 | 2 | 2 | Neur_chan_memb | 367 | 466 | 6.8e-25 | 88.4 | 6.1e-06 | 0.033 | 14.1 |
Results of InterPro Scan
| Gene Model ID | Analysis | Start | End | i_acc | i_desc | GO | Pathway |
|---|---|---|---|---|---|---|---|
| ahya_s0011.g228.t1 | TIGRFAM | 15 | 467 | IPR006201 | Neurotransmitter-gated ion-... | GO:0004888|GO:0005216|GO:00... | |
| ahya_s0011.g228.t1 | Gene3D | 29 | 279 | IPR036734 | Neurotransmitter-gated ion-... | GO:0005230|GO:0006811|GO:00... | |
| ahya_s0011.g228.t1 | PANTHER | 34 | 421 | ||||
| ahya_s0011.g228.t1 | PANTHER | 34 | 421 | IPR006201 | Neurotransmitter-gated ion-... | GO:0004888|GO:0005216|GO:00... | |
| ahya_s0011.g228.t1 | SUPERFAMILY | 39 | 59 | IPR036734 | Neurotransmitter-gated ion-... | GO:0005230|GO:0006811|GO:00... | |
| ahya_s0011.g228.t1 | SUPERFAMILY | 92 | 273 | IPR036734 | Neurotransmitter-gated ion-... | GO:0005230|GO:0006811|GO:00... | |
| ahya_s0011.g228.t1 | Pfam | 96 | 273 | IPR006202 | Neurotransmitter-gated ion-... | GO:0005230|GO:0006811|GO:00... | |
| ahya_s0011.g228.t1 | PRINTS | 119 | 135 | IPR006201 | Neurotransmitter-gated ion-... | GO:0004888|GO:0005216|GO:00... | |
| ahya_s0011.g228.t1 | PRINTS | 150 | 161 | IPR006201 | Neurotransmitter-gated ion-... | GO:0004888|GO:0005216|GO:00... | |
| ahya_s0011.g228.t1 | ProSitePatterns | 193 | 207 | IPR018000 | Neurotransmitter-gated ion-... | ||
| ahya_s0011.g228.t1 | PRINTS | 193 | 207 | IPR006201 | Neurotransmitter-gated ion-... | GO:0004888|GO:0005216|GO:00... | |
| ahya_s0011.g228.t1 | PRINTS | 267 | 279 | IPR006201 | Neurotransmitter-gated ion-... | GO:0004888|GO:0005216|GO:00... | |
| ahya_s0011.g228.t1 | SUPERFAMILY | 273 | 469 | IPR036719 | Neurotransmitter-gated ion-... | GO:0006811|GO:0016021 | |
| ahya_s0011.g228.t1 | PRINTS | 276 | 296 | IPR006028 | Gamma-aminobutyric acid A r... | GO:0004888|GO:0005216|GO:00... | |
| ahya_s0011.g228.t1 | Gene3D | 280 | 472 | IPR036719 | Neurotransmitter-gated ion-... | GO:0006811|GO:0016021 | |
| ahya_s0011.g228.t1 | Pfam | 281 | 417 | IPR006029 | Neurotransmitter-gated ion-... | GO:0006811|GO:0016021 | |
| ahya_s0011.g228.t1 | PRINTS | 302 | 323 | IPR006028 | Gamma-aminobutyric acid A r... | GO:0004888|GO:0005216|GO:00... | |
| ahya_s0011.g228.t1 | PRINTS | 336 | 357 | IPR006028 | Gamma-aminobutyric acid A r... | GO:0004888|GO:0005216|GO:00... | |
| ahya_s0011.g228.t1 | PRINTS | 449 | 469 | IPR006028 | Gamma-aminobutyric acid A r... | GO:0004888|GO:0005216|GO:00... |
Transcript
| Transcript ID | ahya_s0011.g228.t1 |
|---|---|
| Definition | - |
>ahya_s0011.g228.t1 accggtcaataagtttctaggtttcaagttggacaccgagcacaactaccgtgttgccttaaaatcagtggctgtggaat tctaaaataacatgggtttgatgcgacttttgacaagatggttggtgctgttacttctgcagcctgtgaaaattacaaac agcgaagctaccgaaaatcccttgatcaaacgcactgaggttgctaacgcttctgagattttggacagatatctgaaatg ctacgacaaaaggacaagacctaatgtgactgaaggagaagaaaaagcccagttaatccacactcattgctattttattg aggtaatggtcgccaaggggcggccctcgccctcttttatttctctcgtaggccgtcctgaagtggtaaatgtaagcatg gcgataaaagccttcagtaatatcaaggaatccaacatggaattccaggtgtttgtttatcttcgccaacaatgggtcga tagacgcctagcgcatggtgtcgatgcttcacttgcactgggaggcactgatgtcaataggatatggcttccagacgctt acttcacaaacgctaatgattatgaagtcttcacttccaatcagctggtgctgatcgacagccaaggacgtattttttac tttgcttttgtgcgcatagcagctgcctgtcaaatggatttagtgaagtttcctttggatgtgcaacgctgtcagttgac attggagagttttcgtcatacaatggaggagatggactttcggtggaaagaggacgaacctattaccatttttaacaaag agttagcggaattcgacgtcacagcagttaaagtggactccaaaaactcctcttatgtttcaggaaactacaaaaacctt atcgtcacctttacgtttcgtcgtcgcatgggtttttacatcattcagttctatattccttgcattgtgatggtctcctt aagctggatctcgttttggatggatcgatactacatcggagagcgactctctctcggaatcactaccatactcacgatcg tttttctgctcggttccagtaactccaccatgccacgagttagctatgccaaagctattgactggtatctgctgggttct ttcatctttgtgttttccactcttgtgtctgacttgctcatctataggctcagatcaaaagaggtgtccgcggagaaaag gagacagaaggaggaggaggggaagccacaaaacgcgaatataattttccagtgtaaacacggcttcaaaccaaactacg tggcagatgaaaacggtcatgtccacctggtgacgtatcaagagaacaaagaagagggcacgtcacgatgcagcgcccgc gtgcgcacctgctgcacagcttgttcaaaatccactgaaagcgcaaaaaccgatctcagtgtgattaccaacaggtgctg tcgttatatgttcccagcttgttttgcgatttttaaccttatctattggttggccctcagtactggaagctaaaaactga atggttcctgattgcgcggactaaaggagtgacgtcactataaccggacttacccaagttgtagtttaatcgtcgcttcg taatttcagacgtcgattttgaagtactctagaatcgacggtaaaggctgtgacctttatcacgtccgttatagtcaatt tgaaaaacttctttggcgagaaggagacgacgttctgtaaggttctctagcgcctttcattacacccgttaaaatgttaa tttactttgcaataatcatttaaggaaaaaaaaaccttatgtgctaatctacagctcttcttcttacttagagtttattt gccttaaggtaagactaaaaacaaaggtttcaaaaggttcgtagactaatttctgtctaaattgttgctgtttctttagc gttgagcacggaatttccgactatgttttatccctgtgatatcactgttaggtaactgaatccgaagttatcgtgacact gacattaagtaggcgtgacttcaggagttagatgaaacatacgacatcacctaggataatttatttgcggtctaggaaag gcggagggtattttgaattgg |
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Protein
| Protein ID | ahya_s0011.g228.t1 |
|---|---|
| Definition | - |
>ahya_s0011.g228.t1 MGLMRLLTRWLVLLLLQPVKITNSEATENPLIKRTEVANASEILDRYLKCYDKRTRPNVTEGEEKAQLIHTHCYFIEVMV AKGRPSPSFISLVGRPEVVNVSMAIKAFSNIKESNMEFQVFVYLRQQWVDRRLAHGVDASLALGGTDVNRIWLPDAYFTN ANDYEVFTSNQLVLIDSQGRIFYFAFVRIAAACQMDLVKFPLDVQRCQLTLESFRHTMEEMDFRWKEDEPITIFNKELAE FDVTAVKVDSKNSSYVSGNYKNLIVTFTFRRRMGFYIIQFYIPCIVMVSLSWISFWMDRYYIGERLSLGITTILTIVFLL GSSNSTMPRVSYAKAIDWYLLGSFIFVFSTLVSDLLIYRLRSKEVSAEKRRQKEEEGKPQNANIIFQCKHGFKPNYVADE NGHVHLVTYQENKEEGTSRCSARVRTCCTACSKSTESAKTDLSVITNRCCRYMFPACFAIFNLIYWLALSTGS |
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