Gene
| Gene Model ID | ahya_s0011.g240 |
|---|---|
| Locus | sc0000011 : 4427139 ... 4448252 : - |
| To GenomeBrowser | sc0000011:4427139..4448252 |
| Genes list of scaffold | sc0000011 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| ahya_s0011.g240.t1 | 1 | 1 | ERCC4 | 681 | 807 | 1.6e-23 | 83.5 | 2.0e-27 | 3.3e-23 | 82.4 |
Results of InterPro Scan
| Gene Model ID | Analysis | Start | End | i_acc | i_desc | GO | Pathway |
|---|---|---|---|---|---|---|---|
| ahya_s0011.g240.t1 | PANTHER | 6 | 902 | ||||
| ahya_s0011.g240.t1 | TIGRFAM | 91 | 900 | IPR006167 | DNA repair protein XPF | GO:0003697|GO:0004520|GO:00... | Reactome: R-HSA-5685938|Reactome: R-HSA-5696395|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6783310 |
| ahya_s0011.g240.t1 | MobiDBLite | 342 | 363 | ||||
| ahya_s0011.g240.t1 | MobiDBLite | 433 | 508 | ||||
| ahya_s0011.g240.t1 | SUPERFAMILY | 677 | 812 | IPR011335 | Restriction endonuclease t... | Reactome: R-HSA-6783310 | |
| ahya_s0011.g240.t1 | Gene3D | 677 | 825 | ||||
| ahya_s0011.g240.t1 | SMART | 678 | 758 | IPR006166 | ERCC4 domain | GO:0003677|GO:0004518 | Reactome: R-HSA-6783310 |
| ahya_s0011.g240.t1 | Pfam | 681 | 807 | IPR006166 | ERCC4 domain | GO:0003677|GO:0004518 | Reactome: R-HSA-6783310 |
| ahya_s0011.g240.t1 | Gene3D | 829 | 911 | ||||
| ahya_s0011.g240.t1 | SUPERFAMILY | 839 | 902 | IPR010994 | RuvA domain 2-like |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| ahya_s0011.g240.t1 | sp|Q92889|XPF_HUMAN | DNA repair endonuclease XPF | 0.0 |
| ahya_s0011.g240.t1 | sp|Q9QYM7|XPF_CRIGR | DNA repair endonuclease XPF | 0.0 |
| ahya_s0011.g240.t1 | sp|Q9QZD4|XPF_MOUSE | DNA repair endonuclease XPF | 0.0 |
| ahya_s0011.g240.t1 | sp|Q24087|XPF_DROME | DNA repair endonuclease XPF | 0.0 |
| ahya_s0011.g240.t1 | sp|Q9LKI5|XPF_ARATH | DNA repair endonuclease UVH1 | 0.0 |
Transcript
| Transcript ID | ahya_s0011.g240.t1 |
|---|---|
| Definition | - |
>ahya_s0011.g240.t1 atgtcaatttcccttaaaaaagtcaaaaatagaattaaaacccttgcttggttaaaacaacttgggaatatgcatacaga gcaaaaatgtcgaagacgttttagggacgatggttaccatacgcagtttttctggagatacaaagttctgaaagtgaagc gtgtgcattccactatcccttgatctcgtattccctgtccaatttttgttgtaatgcgcgtaggtctggatacgaatata tgacgaccaagatggcggctttgatgtcagaatacgaaaatgcgatgtttttagaagttatggacgatgacggtctcttt gtttcagccaaaggtctgaacatagaaagagttatctcaaaatttttgagtattcattgtgtcacaagtgatccttcatc catttcccttgtcctggtgataaacacaacatctcaagaggaagatttcatattggatgaattaagatcttcagatgtgc ctttgccaaaagtcatcacaactgaattcagctcatctgaaagggagtctgtttatctaaggggaggagttctctttgtt acatcaagaatccttgtagtagatatgttaaccaaaaggcttcctattcatcttgtaactggaattgtcgtttacagagc tcacaagataatagaatcttgccaggaggctttcattctgcgtctttacagggaaaacaacaagactggctttataaaag ccttctcagataatgcacaggcgttcacaaatggcttctttaaagttgaaaaagtgatgaagaacctgtttgtgagaaga ctttatctctggccaaggtttcatgcaacaatttcttctttccttgaaaagcacaagcctgaagtaattgagcttcatct gcatctcacaccttccatgctggcaattcaaacagctattctggatttgattaacacatgtcttaaagaattaaagagag caaatcccacgcttgatcctgaggaccttacagttgagaatggcatcagcaaatcttttgacaaggctttgatgtctcag cttaacccaatatggcatcaattgggaaacaagacaaaacagttggtgtcagatcttagagtcctgagacttattttact ttacctaactcagtatgactgtgttacattctataactttctggaaactctaagggccagtcaacgtgatgtcaagcatc agtctctttggatgtttttggatgcagcagacaccttgtttgtgcatgccaaagcaagggtgatagaatgcacagataga aaacacaagaaaaagaaaggagaaaaaccagaagaggaagagaaagatagtgaaggtcttgtactggaggaaagccccaa atggaaactgttagctgaagtcttggaagagattgaacaagatgataccaaaaatgaaagcaaaattgggcctggtcatg tgctgattgcagcctatgatgaaagaacatgttcacaacttagagactatctctgtgagggtagtgaagctgtgttgaaa cgtctttataacaagatgcttaagaatccgacaacaataggagaaccctcagagatagtttccgtggatgaagaaagcac aggtgatgacccagttgcagaaaatcagaggacaacagattttccgtcatctcgtcggcgtgcagcgaaaacatctggag aagctaataataaaaggactggcaaagggaaaaagctggcagcaaagaaaacaacacagaaagacacagtcaatagtaat agctctgagcaaacagtaaaggtgtttaaaggatcaagatcaaatgtcatcttaaagccaggagatcaagaggacaagga taagacagaggtctctcgccaaataactctgttgacttctcgtgttgtcatcattcatcctttaacagggtgcagtgatc gttacagcttgttacgcacccttaatgaaattgaaccaagatatgtcattctttatgatgcacaaatgcagttcatacga cagctagaggtgttcaaggcctctagacctggaattcctttgcgagtgtattttctgatctatacaggttctgtggagga acagaaatatttaacaacactccgtagagaaaaagaagcctttgagatgctgattaaggagaaaggaaccatggttgtcc cagaggagcgtgaaggacgctcagacgctgccatgttgctgagtcgagatgcatccaaggcttccgatgctgtaaatacg cgaaaagcaggaggacaaattactgacgacaaggcaacaagaaaggttatcgttgatatgcgtgagtttcgcagtgaact gccatcacttattcatcgtagaggaattgatattgaacctgttactttagaggttggtgactacatcctcactccagata tgtgtgtggaaagaaagagtatcagcgatttgattggttcgctaaacaatggaagactgtacaatcaagcagtggcaatg accagattttacaagaaacctgttcttcttatcgaatttgaccctaacaaatctttttctctccaggtaaagtctagtct gtcaagcgaggtttctgtaaatgacatttcatccaagctgactttacttacacttcactttcctaagttgagaatcttgt ggtgtcacagtccgtatgcaactgcagaactctttgatgatttgaaggcgaatcacccagaaccagatgctagcacggca atggctgtgggaactgatcccactttaccttcatcagaaatcacctatagcatgggacctcaggacttcattttgaaact tcccggaataaacttcaagaactacaggtttgtgatgaaaaacgtagctagcattgaaaagttgttcaagttgagtgagg gagaactcacaaccattttgggcaacgctactaacgccaaactgctatgggagtttattcacaaggataacacaacacaa gcgaaagcctcaacgacttttaaaagcaaacgatgataccttgttattcttgatacctcattgtacttatataaacatgc tgcactata |
|
Protein
| Protein ID | ahya_s0011.g240.t1 |
|---|---|
| Definition | - |
>ahya_s0011.g240.t1 MAALMSEYENAMFLEVMDDDGLFVSAKGLNIERVISKFLSIHCVTSDPSSISLVLVINTTSQEEDFILDELRSSDVPLPK VITTEFSSSERESVYLRGGVLFVTSRILVVDMLTKRLPIHLVTGIVVYRAHKIIESCQEAFILRLYRENNKTGFIKAFSD NAQAFTNGFFKVEKVMKNLFVRRLYLWPRFHATISSFLEKHKPEVIELHLHLTPSMLAIQTAILDLINTCLKELKRANPT LDPEDLTVENGISKSFDKALMSQLNPIWHQLGNKTKQLVSDLRVLRLILLYLTQYDCVTFYNFLETLRASQRDVKHQSLW MFLDAADTLFVHAKARVIECTDRKHKKKKGEKPEEEEKDSEGLVLEESPKWKLLAEVLEEIEQDDTKNESKIGPGHVLIA AYDERTCSQLRDYLCEGSEAVLKRLYNKMLKNPTTIGEPSEIVSVDEESTGDDPVAENQRTTDFPSSRRRAAKTSGEANN KRTGKGKKLAAKKTTQKDTVNSNSSEQTVKVFKGSRSNVILKPGDQEDKDKTEVSRQITLLTSRVVIIHPLTGCSDRYSL LRTLNEIEPRYVILYDAQMQFIRQLEVFKASRPGIPLRVYFLIYTGSVEEQKYLTTLRREKEAFEMLIKEKGTMVVPEER EGRSDAAMLLSRDASKASDAVNTRKAGGQITDDKATRKVIVDMREFRSELPSLIHRRGIDIEPVTLEVGDYILTPDMCVE RKSISDLIGSLNNGRLYNQAVAMTRFYKKPVLLIEFDPNKSFSLQVKSSLSSEVSVNDISSKLTLLTLHFPKLRILWCHS PYATAELFDDLKANHPEPDASTAMAVGTDPTLPSSEITYSMGPQDFILKLPGINFKNYRFVMKNVASIEKLFKLSEGELT TILGNATNAKLLWEFIHKDNTTQAKASTTFKSKR |
|