Gene
| Gene Model ID | ahya_s0011.g29 |
|---|---|
| Locus | sc0000011 : 537858 ... 544630 : - |
| To GenomeBrowser | sc0000011:537858..544630 |
| Genes list of scaffold | sc0000011 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| ahya_s0011.g29.t1 | 1 | 1 | Ion_trans | 147 | 249 | 2.2e-09 | 36.8 | 6.8e-13 | 2.2e-09 | 36.8 |
| ahya_s0011.g29.t1 | 1 | 1 | Ion_trans_2 | 165 | 247 | 2.8e-12 | 46.3 | 8.5e-16 | 2.8e-12 | 46.3 |
| ahya_s0011.g29.t1 | 1 | 1 | Lig_chan | 166 | 250 | 1.6e-07 | 31.1 | 8.6e-11 | 2.8e-07 | 30.4 |
Results of InterPro Scan
| Gene Model ID | Analysis | Start | End | i_acc | i_desc | GO | Pathway |
|---|---|---|---|---|---|---|---|
| ahya_s0011.g29.t1 | PANTHER | 108 | 445 | ||||
| ahya_s0011.g29.t1 | PANTHER | 108 | 445 | ||||
| ahya_s0011.g29.t1 | Gene3D | 142 | 300 | ||||
| ahya_s0011.g29.t1 | SUPERFAMILY | 151 | 254 | ||||
| ahya_s0011.g29.t1 | Pfam | 165 | 247 | IPR013099 | Potassium channel domain | ||
| ahya_s0011.g29.t1 | Pfam | 166 | 250 | IPR001320 | Ionotropic glutamate receptor | GO:0004970|GO:0016020 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| ahya_s0011.g29.t1 | sp|Q61423|KCNA4_MOUSE | Potassium voltage-gated channel subfamily A member 4 | 5.0e-07 |
Transcript
| Transcript ID | ahya_s0011.g29.t1 |
|---|---|
| Definition | - |
>ahya_s0011.g29.t1 ataaagtgcagggacaactttatttccctcatcttcggcaacaccgacacgaatcttcaaaagatacttcaacgccctcc aaaatgataagtgtgtttgtctgccttctcttgggattagcattcaccgaaggggaagaacaattgttttattccgcgag ttgccagcagctgtcatattctttttcaggttttgaggtggaatggtccaacatgaaaccgtacatatataattctacgg ctacaaagccgaaaggactgttttgtgaattccttcgacatatgatcaaacgtacggacaagatcttctacaaatttaat cagaatccaggaaacaagatccaggacttcaagtgcagattgacgaatcgtcaacaagtggaatccaacaaaagtggtaa caccactttaataatgccagtaatgatcaaagcaaatggagaggtcgatgatccttgtacaattaaactgcaccattcaa agggaccggcttacattgtgaaaagaaacgtactgaagcccttgacacaacttggtcgttcatttattaacggtggacaa atcataggcttgactttgatcttaacggcaatctctggtgttataatgtggatactggatcgtcagaggaaccccgtaga tttcccagcatcctttatacaaggttcctggcaaggcttttggtgggcttttgttactatgacaacggttggctacggag atacagctccaaggtctgttcaagcgcgtctttacagcattctgtggatgttattaggaatggtagctttctctgtcctc acagctaacttcacaagctcgctggctcatgagattgaggaagacttaagcctccatggcaaaacggtggcagtgttgaa tagaagtttagcaaagcaagttgccgtgtctgaaggagctaaatttattgagtataacgatgttgaggcaatgattcaat cactaataaccgagaaaaaccgaagtgtaaatggattgctgttggatatacacgtggctttatcgaacgcgctacgattc cgagaacacactttggagattggacgaagagtagattataaatacaacattggtatgagagtcaaaccggcacaaaatga aacatcatgtttcctcatgaagaaatgcgccaaagatcttttgtcaagtgagacatttgaactcaaagcgcttaagtatt tatctgatgccttctctagcacccaaagccaaaacgtgtcgtccagtttgttcgatgattacgattttctcatcattctt cttgctatatttggtactctaattggcgctggcctagtttgggagtatttctacttcaggcctaaagtggaacgaatcaa caaagttaactcagatgacattgaaatggaagatggtgacagggattccgacaaggcaatcttgatgagaagtgaagtag aagagctgtgcgagggatgtcgtgcaaaagtagagaacatcatgaaagaggaaggaaagcagagattacaaggccttcag actgttgtcagcccattcgacggtttttctatcatcggaaatcagctgagttctattccaggagtttcttcgataaaaaa gatccgctcaggaattccttcaaatgtccagcacttggcaaaattaacaagaggcaaaggcaatcaccggagttgaactt actctccaattgcgaaaaaatgaggacagacgtaaattttgagcttacatacagaggaattacatgaagagtttccgtaa cgaatagcttagtatgaaagaaaaaaaaagccttgat |
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Protein
| Protein ID | ahya_s0011.g29.t1 |
|---|---|
| Definition | - |
>ahya_s0011.g29.t1 MISVFVCLLLGLAFTEGEEQLFYSASCQQLSYSFSGFEVEWSNMKPYIYNSTATKPKGLFCEFLRHMIKRTDKIFYKFNQ NPGNKIQDFKCRLTNRQQVESNKSGNTTLIMPVMIKANGEVDDPCTIKLHHSKGPAYIVKRNVLKPLTQLGRSFINGGQI IGLTLILTAISGVIMWILDRQRNPVDFPASFIQGSWQGFWWAFVTMTTVGYGDTAPRSVQARLYSILWMLLGMVAFSVLT ANFTSSLAHEIEEDLSLHGKTVAVLNRSLAKQVAVSEGAKFIEYNDVEAMIQSLITEKNRSVNGLLLDIHVALSNALRFR EHTLEIGRRVDYKYNIGMRVKPAQNETSCFLMKKCAKDLLSSETFELKALKYLSDAFSSTQSQNVSSSLFDDYDFLIILL AIFGTLIGAGLVWEYFYFRPKVERINKVNSDDIEMEDGDRDSDKAILMRSEVEELCEGCRAKVENIMKEEGKQRLQGLQT VVSPFDGFSIIGNQLSSIPGVSSIKKIRSGIPSNVQHLAKLTRGKGNHRS |
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