Acropora hyacinthus ver. 1.0

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDahya_s0011.g44
Locus sc0000011 : 939800 ... 950572 : +
To GenomeBrowser sc0000011:939800..950572
Genes list of scaffold sc0000011

Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
ahya_s0011.g44.t1 4 1 WD40 84 111 3.0e-33 113.2 2.1e-08 3.8e-05 24.2
ahya_s0011.g44.t1 4 2 WD40 118 154 3.0e-33 113.2 5.0e-06 0.0091 16.7
ahya_s0011.g44.t1 4 3 WD40 215 246 3.0e-33 113.2 6.8e-07 0.0012 19.5
ahya_s0011.g44.t1 1 1 ANAPC4_WD40 228 313 9.4e-12 44.9 1.1e-06 0.002 18.3
ahya_s0011.g44.t1 4 4 WD40 256 290 3.0e-33 113.2 3.0e-07 0.00054 20.6

Results of InterPro Scan
Gene Model ID Analysis Start End i_acc i_desc GO Pathway
ahya_s0011.g44.t1 ProSiteProfiles 1 318 IPR017986 WD40-repeat-containing domain GO:0005515
ahya_s0011.g44.t1 Gene3D 2 48
ahya_s0011.g44.t1 PANTHER 10 315 IPR037588 Target of rapamycin complex... GO:0031929|GO:0031931|GO:00... Reactome: R-HSA-1257604|Reactome: R-HSA-1632852|Reactome: R-HSA-165159|Reactome: R-HSA-166208|Reactome: R-HSA-3371571|Reactome: R-HSA-380972|Reactome: R-HSA-389357|Reactome: R-HSA-5218920|Reactome: R-HSA-5628897|Reactome: R-HSA-5674400|Reactome: R-HSA-6804757|Reactome: R-HSA-8943724
ahya_s0011.g44.t1 PANTHER 10 315
ahya_s0011.g44.t1 SUPERFAMILY 12 312 IPR011047 Quinoprotein alcohol dehydr...
ahya_s0011.g44.t1 CDD 12 290
ahya_s0011.g44.t1 SMART 29 67 IPR001680 WD40 repeat GO:0005515
ahya_s0011.g44.t1 Pfam 35 67 IPR001680 WD40 repeat GO:0005515
ahya_s0011.g44.t1 Gene3D 49 114
ahya_s0011.g44.t1 SMART 72 111 IPR001680 WD40 repeat GO:0005515
ahya_s0011.g44.t1 ProSiteProfiles 79 120 IPR001680 WD40 repeat GO:0005515
ahya_s0011.g44.t1 Pfam 84 111 IPR001680 WD40 repeat GO:0005515
ahya_s0011.g44.t1 PRINTS 98 112 IPR020472 G-protein beta WD-40 repeat
ahya_s0011.g44.t1 ProSitePatterns 98 112 IPR019775 WD40 repeat, conserved site
ahya_s0011.g44.t1 Gene3D 115 213 IPR011042 Six-bladed beta-propeller, ...
ahya_s0011.g44.t1 SMART 116 154 IPR001680 WD40 repeat GO:0005515
ahya_s0011.g44.t1 Pfam 118 154 IPR001680 WD40 repeat GO:0005515
ahya_s0011.g44.t1 SMART 157 196 IPR001680 WD40 repeat GO:0005515
ahya_s0011.g44.t1 SMART 207 247 IPR001680 WD40 repeat GO:0005515
ahya_s0011.g44.t1 Gene3D 214 256
ahya_s0011.g44.t1 Pfam 215 246 IPR001680 WD40 repeat GO:0005515
ahya_s0011.g44.t1 ProSiteProfiles 215 256 IPR001680 WD40 repeat GO:0005515
ahya_s0011.g44.t1 PRINTS 234 248 IPR020472 G-protein beta WD-40 repeat
ahya_s0011.g44.t1 SMART 250 290 IPR001680 WD40 repeat GO:0005515
ahya_s0011.g44.t1 Pfam 256 290 IPR001680 WD40 repeat GO:0005515
ahya_s0011.g44.t1 Gene3D 257 287
ahya_s0011.g44.t1 ProSiteProfiles 258 299 IPR001680 WD40 repeat GO:0005515
ahya_s0011.g44.t1 PRINTS 277 291 IPR020472 G-protein beta WD-40 repeat
ahya_s0011.g44.t1 ProSitePatterns 277 291 IPR019775 WD40 repeat, conserved site
ahya_s0011.g44.t1 Gene3D 288 317

Blast Hit to nr / sp
query Subject ID Subject Name evalue
ahya_s0011.g44.t1 sp|Q803V5|LST8_DANRE Target of rapamycin complex subunit lst8 0.0
ahya_s0011.g44.t1 sp|Q6PA72|LST8_XENLA Target of rapamycin complex subunit lst8 0.0
ahya_s0011.g44.t1 sp|Q9DCJ1|LST8_MOUSE Target of rapamycin complex subunit LST8 0.0
ahya_s0011.g44.t1 sp|Q17QU5|LST8_BOVIN Target of rapamycin complex subunit LST8 0.0
ahya_s0011.g44.t1 sp|Q5I0B4|LST8_XENTR Target of rapamycin complex subunit lst8 0.0

Transcript
Transcript IDahya_s0011.g44.t1
Definition- 
>ahya_s0011.g44.t1
cttcgaagttttaattatttttatcgctgaaagttagtggcaatgtgctttattataggttttaaataccatgaagtcac
agataagctgaagcgggtggaaatttaaaaaaagatgacagaaacagatgggtcaagtgaagcagttattctggccacag
cgggctatgatcacgctatcaaattttggcaagctcacagtggaatatgccataggacagttcaacatccagactctcaa
gtgaatgccatgcagattactcctgacagacagttattagctgcagcaggttaccaacacattcgcatgtatgatatcaa
ctcaagcaacccaaatcctgttgtaaattatgatggtgtatccaaaaatgtgacagcagttggatttcatgaagatggca
aatggatgtacactggtggagaagattgttcagccagaatatgggacttgagatcacgcaatcttcagtgccagagagtg
tttcaagtgaatgctccagtgaactgtgtttgtcttcatcctaaccagggtgagcttattgttggtgatcaaagtggtgc
aattcacatgtgggatctcaagacagatcacaacgaacagcttattcctgagtcagaagcatctattttgtccatcagta
ttgatagagaagcatcatacatggcgtctgtaaacaatcagggtaactgctatgtatggagcctcacaggaggaaccaga
gacgagccaactgtcctgcaccccagaacaaaaatccctcatgcacataaacgagcagccttaaagtgcctgtttagtcc
agattcttgctttttagccacaacatctgccgacaccacagtcaacatttggcaaacatctgacttctctctcaaaaaga
ctcttaaagaagctaatcaaagatgggtgtgggattgtgccttctctgaagactctcagtatctgatcacagcatcgtcg
gacaatatggctcgcttatggaatttggatcacggagaagtggtccgtgagtacagcggacatcaaaaagctgtggtatc
actggctttcagagatgcgcatgctgtatagtgaacaaaattgccatggttactttacaagagctaacacagcattgagt
tttcatatcaactcgttacttttgtaacataaagagttttaacaaaagttctgaaacaaaacatttgtaaatgaaggaaa
gtctatccaatacgacgtcattgactaatgaactaagtcgctcttcatgatttttatattgacttactagtaaataatta
tgataactttttggttacttttggatcagggaagggctatatgcatggcgttttacgctgtatgatatctctcacttatt
acgcgcactctaatcggtcaattttgcggtccatattctactgcatgtaaggcccgctacgtcctgcaaaatttaaaatg
ttggcgagtttcctttcttgcgctcctgattaacctcatagataaaagaaatatcttaccatcctcgtttttcggtcaga
actgtaagttacgaatcgtcgtttttttcccgttgatttataaacagaaaaaactcggttagtaagaggtatttacgtga
cggcatttactgttcttaagtgtattgagttgtaaacagtgctccgatggagagcaaaataagtctggaattatttttga
ctcttgtagttttttttttttttttgtaagacttccgacagcactttgaaagaataaagtgccttcaacact

Protein
Protein IDahya_s0011.g44.t1
Definition- 
>ahya_s0011.g44.t1
MTETDGSSEAVILATAGYDHAIKFWQAHSGICHRTVQHPDSQVNAMQITPDRQLLAAAGYQHIRMYDINSSNPNPVVNYD
GVSKNVTAVGFHEDGKWMYTGGEDCSARIWDLRSRNLQCQRVFQVNAPVNCVCLHPNQGELIVGDQSGAIHMWDLKTDHN
EQLIPESEASILSISIDREASYMASVNNQGNCYVWSLTGGTRDEPTVLHPRTKIPHAHKRAALKCLFSPDSCFLATTSAD
TTVNIWQTSDFSLKKTLKEANQRWVWDCAFSEDSQYLITASSDNMARLWNLDHGEVVREYSGHQKAVVSLAFRDAHAV

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