Gene
| Gene Model ID | ahya_s0011.g93 |
|---|---|
| Locus | sc0000011 : 1989322 ... 2000146 : + |
| To GenomeBrowser | sc0000011:1989322..2000146 |
| Genes list of scaffold | sc0000011 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| ahya_s0011.g93.t1 | 1 | 1 | HHH_8 | 12 | 77 | 6.5e-21 | 74.3 | 2.0e-21 | 2.7e-18 | 66.0 |
| ahya_s0011.g93.t1 | 1 | 1 | DNA_pol_lambd_f | 98 | 147 | 4.3e-16 | 58.4 | 7.3e-19 | 9.9e-16 | 57.2 |
| ahya_s0011.g93.t1 | 1 | 1 | HHH_5 | 98 | 127 | 5.1e-07 | 30.1 | 5.4e-08 | 7.4e-05 | 23.2 |
| ahya_s0011.g93.t1 | 1 | 1 | DNA_pol_B_palm | 149 | 260 | 1.7e-35 | 121.4 | 2.9e-38 | 4.0e-35 | 120.3 |
| ahya_s0011.g93.t1 | 1 | 1 | DNA_pol_B_thumb | 268 | 333 | 3.6e-20 | 71.6 | 5.0e-23 | 6.8e-20 | 70.8 |
Results of InterPro Scan
| Gene Model ID | Analysis | Start | End | i_acc | i_desc | GO | Pathway |
|---|---|---|---|---|---|---|---|
| ahya_s0011.g93.t1 | Gene3D | 1 | 82 | IPR027421 | DNA polymerase lambda lyase... | ||
| ahya_s0011.g93.t1 | SUPERFAMILY | 2 | 86 | IPR027421 | DNA polymerase lambda lyase... | ||
| ahya_s0011.g93.t1 | PANTHER | 4 | 334 | ||||
| ahya_s0011.g93.t1 | PANTHER | 4 | 334 | ||||
| ahya_s0011.g93.t1 | SMART | 10 | 333 | IPR002054 | DNA-directed DNA polymerase X | GO:0003677|GO:0003887 | |
| ahya_s0011.g93.t1 | Pfam | 12 | 77 | IPR010996 | DNA polymerase beta-like, N... | ||
| ahya_s0011.g93.t1 | CDD | 14 | 332 | IPR002054 | DNA-directed DNA polymerase X | GO:0003677|GO:0003887 | |
| ahya_s0011.g93.t1 | Coils | 22 | 42 | ||||
| ahya_s0011.g93.t1 | SMART | 57 | 76 | IPR003583 | Helix-hairpin-helix DNA-bin... | GO:0003677|GO:0006281 | |
| ahya_s0011.g93.t1 | PRINTS | 64 | 81 | IPR002008 | DNA polymerase family X, be... | GO:0003677|GO:0006281 | KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 |
| ahya_s0011.g93.t1 | Gene3D | 83 | 105 | ||||
| ahya_s0011.g93.t1 | SUPERFAMILY | 93 | 147 | ||||
| ahya_s0011.g93.t1 | SMART | 98 | 117 | IPR003583 | Helix-hairpin-helix DNA-bin... | GO:0003677|GO:0006281 | |
| ahya_s0011.g93.t1 | Pfam | 98 | 147 | IPR018944 | DNA polymerase lambda, fing... | GO:0003677|GO:0005634|GO:00... | |
| ahya_s0011.g93.t1 | PRINTS | 105 | 122 | IPR022312 | DNA polymerase family X | GO:0003677|GO:0034061 | |
| ahya_s0011.g93.t1 | Gene3D | 106 | 147 | ||||
| ahya_s0011.g93.t1 | PRINTS | 137 | 151 | IPR002008 | DNA polymerase family X, be... | GO:0003677|GO:0006281 | KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 |
| ahya_s0011.g93.t1 | SUPERFAMILY | 149 | 333 | ||||
| ahya_s0011.g93.t1 | Gene3D | 149 | 268 | ||||
| ahya_s0011.g93.t1 | Pfam | 149 | 260 | IPR028207 | DNA polymerase beta, palm d... | ||
| ahya_s0011.g93.t1 | PRINTS | 176 | 190 | IPR022312 | DNA polymerase family X | GO:0003677|GO:0034061 | |
| ahya_s0011.g93.t1 | PRINTS | 177 | 196 | IPR002008 | DNA polymerase family X, be... | GO:0003677|GO:0006281 | KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 |
| ahya_s0011.g93.t1 | ProSitePatterns | 179 | 198 | IPR019843 | DNA polymerase family X, bi... | GO:0016779 | |
| ahya_s0011.g93.t1 | PRINTS | 190 | 198 | IPR022312 | DNA polymerase family X | GO:0003677|GO:0034061 | |
| ahya_s0011.g93.t1 | PRINTS | 252 | 260 | IPR002008 | DNA polymerase family X, be... | GO:0003677|GO:0006281 | KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 |
| ahya_s0011.g93.t1 | PRINTS | 253 | 262 | IPR022312 | DNA polymerase family X | GO:0003677|GO:0034061 | |
| ahya_s0011.g93.t1 | PRINTS | 267 | 274 | IPR002008 | DNA polymerase family X, be... | GO:0003677|GO:0006281 | KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 |
| ahya_s0011.g93.t1 | Pfam | 268 | 333 | IPR029398 | DNA polymerase beta, thumb ... | ||
| ahya_s0011.g93.t1 | PRINTS | 269 | 282 | IPR022312 | DNA polymerase family X | GO:0003677|GO:0034061 | |
| ahya_s0011.g93.t1 | Gene3D | 269 | 332 | IPR037160 | DNA polymerase, thumb domai... | ||
| ahya_s0011.g93.t1 | PRINTS | 314 | 332 | IPR022312 | DNA polymerase family X | GO:0003677|GO:0034061 | |
| ahya_s0011.g93.t1 | PRINTS | 315 | 332 | IPR002008 | DNA polymerase family X, be... | GO:0003677|GO:0006281 | KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| ahya_s0011.g93.t1 | sp|O57383|DPOLB_XENLA | DNA polymerase beta | 0.0 |
Transcript
| Transcript ID | ahya_s0011.g93.t1 |
|---|---|
| Definition | - |
>ahya_s0011.g93.t1 gttggtcaaatgcgcaaaaaaaaaaggaaatattttcagcgcagctttgtctcgacttcggataaaacatacggagttcg aacccagtccaagcgcgctttttaaaccagtatggcgacatctttagttgcttgttttcagctagcagcgctgattatag gatagctttctcttcaggaatgagtaaacgaaaagcccctgatcagaatccaaacagcgaattttgtgattttcttatcg agcttgcggaatacgagaagaatgtagcaagacaaattcataaatacaacgcatacagaaaagcagcatccgtgcttgca aagcatcccactaaaatcaaaagtggagcagatgctcggaaattgccggggattggagacaaaattggcaaaaagattga tgagtttatcaagacagggaagttggagaagttagaaaagataaggaaggatgactcaagtttggctattcagcagttaa caagagtttctggaattgggccagctgctgcaagaaagctagttgatgatggcgtaacgacagtggaagggcttaaaaag gtccaagacaagctcaatcatcaccagaaaattggactcaaatatgtggaagaatttgaaaagcgcattccacgagaaga gatgctgatgcttcaggaaattattacacagatggtcgcagattttgacaaagaagtaattgcaacagtttgtggtagtt ttaggagagggtctgcatccagtggagacatagatgtattgatgactcatccctcattcttttcctacaatgatgacttt gacaagaaagctcttcttcatggtgctgtcaagaaaatgacaaaagaggggtttgtcacagatacaatttccctgggtga cacaaaatttatgggagtatgtgtgctgccaaaaacagatgaaaaactacacagaagaatagacattagattgattccca atgatcaatattattgcgggattctgtacttcactggtagtgatgaatttaacagaagaatgcgacaagaagcgctggag aaaggcttcaccattaatgaatactctatccggcctttggggagtactggtgtgccaggagagcccattccggtgacaag cgaagaggaaatatttgaattgattgacatggattacaaacaacctcatgagagaaatctctgaactcattgttggaacc gagttcaaat |
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Protein
| Protein ID | ahya_s0011.g93.t1 |
|---|---|
| Definition | - |
>ahya_s0011.g93.t1 MSKRKAPDQNPNSEFCDFLIELAEYEKNVARQIHKYNAYRKAASVLAKHPTKIKSGADARKLPGIGDKIGKKIDEFIKTG KLEKLEKIRKDDSSLAIQQLTRVSGIGPAAARKLVDDGVTTVEGLKKVQDKLNHHQKIGLKYVEEFEKRIPREEMLMLQE IITQMVADFDKEVIATVCGSFRRGSASSGDIDVLMTHPSFFSYNDDFDKKALLHGAVKKMTKEGFVTDTISLGDTKFMGV CVLPKTDEKLHRRIDIRLIPNDQYYCGILYFTGSDEFNRRMRQEALEKGFTINEYSIRPLGSTGVPGEPIPVTSEEEIFE LIDMDYKQPHERNL |
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