Gene
| Gene Model ID | aug_v2a.00218 |
|---|---|
| Locus | scaf100 : 22906 ... 28560 : + |
| To GenomeBrowser | scaf100:22906..28560 |
| Genes list of scaffold | scaf100 |
Manual annotation
| Study field | Retrovirus |
|---|---|
| Gene name | Adi-Retrovirus-related 20-30 |
| Description | DNA sequence of this gene model showed similarity with that of Adi-Retrovirus-related 20-1. This gene model contains Rapsyn_N, SHNi-TPR, TPR_4, TPR_1, TPR_2, Gmad2 and DUF2977 domains. |
| mRNA evidence |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| aug_v2a.00218.t1 | gi|723141315|ref|XP_010287602.1| | PREDICTED: tetratricopeptide repeat protein 28, partial [Phaethon lepturus] | 0.0 |
| aug_v2a.00218.t1 | gi|704522860|ref|XP_010083774.1| | PREDICTED: tetratricopeptide repeat protein 28, partial [Pterocles gutturalis] | 0.0 |
| aug_v2a.00218.t1 | gi|694662440|ref|XP_009486238.1| | PREDICTED: LOW QUALITY PROTEIN: tetratricopeptide repeat protein 28-like, partial [Pelecanus crispus] | 0.0 |
| aug_v2a.00218.t1 | gi|699592881|ref|XP_009867075.1| | PREDICTED: LOW QUALITY PROTEIN: tetratricopeptide repeat protein 28-like, partial [Apaloderma vittatum] | 0.0 |
| aug_v2a.00218.t1 | gi|752438291|ref|XP_011214917.1| | PREDICTED: tetratricopeptide repeat protein 28 [Ailuropoda melanoleuca] | 0.0 |
Transcript
| Transcript ID | aug_v2a.00218.t1 |
|---|---|
| Definition | - |
>aug_v2a.00218.t1 taaactgctgccattggcacatacgaattcttttctgttggacagttaagttgaaaagaaagaaaaaatgataaaatcac ttgacaacagctgctccagcaaatgctcctgcatctgctacgtgtgccattcattggcccttttactaattctttagtca ttaacttacttattttttacgtgttaaatttttttggaaaagaaacagttgaccaagatggaaatggcacagtatacgtc agtcacgggagatatctacagtcaaagtgtgactacccaaaagcacgccataagcaacttgaagatcgattgaaaattag aagaaaaatcgctgatcaggacagagaaggacaagcctatggaaacctcgacattgcttatcagtctctcggtgactatc gaaaagcaatcgagtatcatgaaaaagaattgaaaattgcaattgaaatcggtgatagggccagagaaggaaaagcctat ggaaatctcggtattgcttacaattcactgagtgactatcgaaaagccattgagtatcacgaaaaatatttgaaaattgc catagaaatcggtgatcgagccggagaaggagaagcctatggatatctcggcattgcttaccagtcacggggtgactatc gaagagctaataagtattatgaaaaggattcgaaaattgcaatagaaatcggtgatcgacccgaagaaaggaaaggttat ggaaatctcggcgttgctcgccagtcaatcgatgactatcgaaaagccattcagtattatgaagaagatttaaaagttgc attagaaatcggggatcgggtcgaagaaggggaatcctatggcaatctcggcattgcttaccagtcattgggtgactatc aaaaagccattgagcatcatgaaaaatatttgaaaattgaactagaaatcgaggatcgggacggagaagggagagcctat ggaaatcttggagttgctcaccagtcactgggtgacaatcaaaaagccatggagtatcaccaaaaacatttaaaaatttc catagaaatcagtgatctggccggagaaggagaagcctatggaaatctcggcgttgctcaccagtcactgggtgactatc gaaaagctattgagtatcatgagaaatatttaaagattgcattagaaatcggtgatcaggcgagaggaggacaagcctat ggaaatatcggcactgcttaccagtcattgggtgactatcaaaaagcaattgagtatcatgagaaatatttgaaaatgga attagaagtcggtgatcgggaggcagaaggaaaagcttatggcaatctcggcgctgcttgctactcactgggtgattatc gaaaagcaatcgagtatcaagataaatatttaaaaattgcattagaaatcggtgatcaggccgcagaagggagtgcctat ggttatctcggccttgcttaccagtcattgggtgactatcgaaaagccattgagtgtcaagagaaacatttgaaaattgc aatagaaatcggtgaacgggacggagaaggacgagcctatgaatatctaggcattgctcacaattcactgggtgactatc aaaaagccattaagtatcacgaaaaagttttgaaaattgccatagaaatcggtgatcagaccatggaaagcaaagcctat gaaaatcttggcattgcttatcagtcactgggtgactatcgaaaaggcattgagtatcatgagaaatatttgaaaattgc gatacaaatttgtgatcgggccatggaaggaaaagcctatggaaatcttggcattgcttaccagtcattaggtcactatc caaaaggcattgagtgtcatgagaaatatttaaaaattgccatagaaatcggtgatcgggccatagaagggaaagcctat ggaaatctaggcattgcttaccagtcattgggtgactatggaaagggcattgagtatcttgagaaatgtttgaaaaatgc gatagaaatcggtgatcagttcggaaaaggacgagcctataaatatctaggcattgctcacaattcactgggtgactatc agaaagccattacgtatcacgaaaaacatttcaacatttccatcgaaatcggtgatcgggccgtagaaggagaagcctat ggatctcttggaattacttaccagtcactgggtgactatccaaaagccattgagtatcatgaaaaatgtttgaaaattgc attagaaatctgtgatcgggccagagaaggacgagcctatggaaatctcggcattgcttaccaggcactggctgactatg aaaaggccatcgattgttatgagaaatatttgaaaattgctttagaaatcagtgatcgggtcggacaaggacgagcctat ggacacctcggctttgcttaccagtcattggctgactatcaaaaagccatcgagtatcatgagaaatatttgaaaattgc agtagaaatcggggatcgggaagcagaaggaaaagcttatggcaatctaggtgcagcttgctactcactgggtgtttatc gaaaagcaatcgactatcaagagaaatatttgaaaattgcatcagaaatcggtgatcaggccgcagaaggaggagcctat gcatatctcggcactgcttaccagtcattgggtgactatcaaaacgccattgagtatcaagaaaaacatttgaaaannnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgcaataaagatcggtgatcgggaaggagaaggacgagcctatgaata tctaggcattgctcacaattcactgggtgactataaaaaagccattgagaataaaaaaaaacatttggaaattgtaatag aaatcggcgataaagatggagaaggacgagcctatgaaagtctcggcgttgcttatcagtcatggggtcactatcgaaag gccattaaatatcacgaaaaacatttaaaaattgctttagaaatcggtgatcaggcgagaaaaagaagagcctatgaaaa acttcgcattgcttacgagtcaatgggtgactatcaaaaagccattgcgtatcaagaagaacttttgaaaattgcaatag aaatcggtgatcgggcggaagaagggagttcctatgaaaatctggccgttgcttaccagtcactgggtgacgatcaaaaa gctattgagtatttcgaaaaacatttgaacattgccatagaaatcggtgatcagaccatagaaagaaaagcctatggaaa tcttggcattgcttacgagtcactgggtgactatccaaaagccattgagtattatgagaaatatgtgaaaattgccattg aaatcggtgatcgggccgcagaaggagatgcttatagatttctcggcgttgcccacctgtcatttggtgaccttcaaaag agcaaagggtatcacgataaatatttaaaaatttcaaaagaaatccgtgatggagacggaaaagaagaagcctatgaaag tcttggcgatgcataccagtcagtgagtgactatcgaaaagccgttgaatatcttgagaaatattcgaaaattgcattag aaatcggtgatctggagggagaaggacgagcctatgaatttctaggaattgcttaccagtcactgggtgactatcgaaaa gccattgagtatcatgagaaacatttgaaaattgctatagaaagcggtaatcgggaaagagaagaagaagcctatgaaag tctagccgttgcttaccagtcattgggtgactatgaaaaagccattgggtatctagaaaaacacttgaaaattgcagtag aaatcggtcatcgggcgaaagaagggagttcctatgaaaagctcggcgttgctaaccgctcactgggtaacaatcaaaaa gccattgagtatcatgagaaacatttgaaaattgccatagaaatcggtgatcgggccatagaaggaaaagcctatggata tcttggcattgtttacaagtcactgggtgacaatcaaaaagccattgagtatcatgagaaacatttgaaaattgccatag aaatcgatgatcgggccacagaaggacgagcctggggaaatcttggcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttgcaataaagatcggggatcaagcagg agaaggacgagcctatgaatatctaggcattgctcacaattcactgggtgactatcaaaaagccattgagtatcacgaaa aacatttgaaatttgtaatagaaatcggtgatcgggacggaaaaggacgagcctatgaaagtctcggcgttgcttatcag tcgctgggtgactatcgaaaggccattgagtatcataaagaagatttgaaaattgccatagaaatcggtgatcgggccat agaaggaaaagcaaatgaaaatcttggcaatgcttacaagtcactggatgactatccaaaagccattgagcatcatgaga aatgtttgaaaacagcatcagaaatcggtgatcaggccgcagaagggagagcttatggatatctcgccaatattcacaag tccctgggtgactatcataaagctattgagtatgaagaaaaacatttgaaaactgccatagaaatgggagatcgggacgg agaaggaaaagccttttaagtttttggcgttgtttaattaatcgtttaacttatg |
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Protein
| Protein ID | aug_v2a.00218.t1 |
|---|---|
| Definition | - |
>aug_v2a.00218.t1 MLLHLLRVPFIGPFTNSLVINLLIFYVLNFFGKETVDQDGNGTVYVSHGRYLQSKCDYPKARHKQLEDRLKIRRKIADQD REGQAYGNLDIAYQSLGDYRKAIEYHEKELKIAIEIGDRAREGKAYGNLGIAYNSLSDYRKAIEYHEKYLKIAIEIGDRA GEGEAYGYLGIAYQSRGDYRRANKYYEKDSKIAIEIGDRPEERKGYGNLGVARQSIDDYRKAIQYYEEDLKVALEIGDRV EEGESYGNLGIAYQSLGDYQKAIEHHEKYLKIELEIEDRDGEGRAYGNLGVAHQSLGDNQKAMEYHQKHLKISIEISDLA GEGEAYGNLGVAHQSLGDYRKAIEYHEKYLKIALEIGDQARGGQAYGNIGTAYQSLGDYQKAIEYHEKYLKMELEVGDRE AEGKAYGNLGAACYSLGDYRKAIEYQDKYLKIALEIGDQAAEGSAYGYLGLAYQSLGDYRKAIECQEKHLKIAIEIGERD GEGRAYEYLGIAHNSLGDYQKAIKYHEKVLKIAIEIGDQTMESKAYENLGIAYQSLGDYRKGIEYHEKYLKIAIQICDRA MEGKAYGNLGIAYQSLGHYPKGIECHEKYLKIAIEIGDRAIEGKAYGNLGIAYQSLGDYGKGIEYLEKCLKNAIEIGDQF GKGRAYKYLGIAHNSLGDYQKAITYHEKHFNISIEIGDRAVEGEAYGSLGITYQSLGDYPKAIEYHEKCLKIALEICDRA REGRAYGNLGIAYQALADYEKAIDCYEKYLKIALEISDRVGQGRAYGHLGFAYQSLADYQKAIEYHEKYLKIAVEIGDRE AEGKAYGNLGAACYSLGVYRKAIDYQEKYLKIASEIGDQAAEGGAYAYLGTAYQSLEIGDKDGEGRAYESLGVAYQSWGH YRKAIKYHEKHLKIALEIGDQARKRRAYEKLRIAYESMGDYQKAIAYQEELLKIAIEIGDRAEEGSSYENLAVAYQSLGD DQKAIEYFEKHLNIAIEIGDQTIERKAYGNLGIAYESLGDYPKAIEYYEKYVKIAIEIGDRAAEGDAYRFLGVAHLSFGD LQKSKGYHDKYLKISKEIRDGDGKEEAYESLGDAYQSVSDYRKAVEYLEKYSKIALEIGDLEGEGRAYEFLGIAYQSLGD YRKAIEYHEKHLKIAIESGNREREEEAYESLAVAYQSLGDYEKAIGYLEKHLKIAVEIGHRAKEGSSYEKLGVANRSLGN NQKAIEYHEKHLKIAIEIGDRAIEGKAYGYLGIVYKSLEIGDRDGKGRAYESLGVAYQSLGDYRKAIEYHKEDLKIAIEI GDRAIEGKANENLGNAYKSLDDYPKAIEHHEKCLKTASEIGDQAAEGRAYGYLANIHKSLGDYHKAIEYEEKHLKTAIEM GDRDGEGKAF* |
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