Gene
Gene Model ID | aug_v2a.00301 |
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Locus | scaf120 : 15784 ... 16615 : - |
To GenomeBrowser | scaf120:15784..16615 |
Genes list of scaffold | scaf120 |
Manual annotation
Study field | Retrovirus |
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Gene name | Adi-Retrovirus-related 1-8 |
Description | DNA sequence of this gene model showed similarity with that of Adi-Retrovirus-related 1-1. This gene model contains RVT_1 domain. |
mRNA evidence |
Annotation by Blast2GO
Annotation | GO |
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reverse transcriptase family protein | GO:0006259 GO:0046872 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
aug_v2a.00301.t1 | gi|339256594|ref|XP_003370329.1| | reverse transcriptase family protein [Trichinella spiralis] | 7.00649e-44 |
aug_v2a.00301.t1 | gi|339239677|ref|XP_003378755.1| | reverse transcriptase family protein [Trichinella spiralis] | 2.00386e-43 |
aug_v2a.00301.t1 | gi|339256318|ref|XP_003370466.1| | reverse transcriptase family protein [Trichinella spiralis] | 3.9937e-43 |
aug_v2a.00301.t1 | gi|390359302|ref|XP_003729452.1| | 7.0e-39 | |
aug_v2a.00301.t1 | gi|499047988|ref|XP_004574547.1| | 8.0e-39 |
Transcript
Transcript ID | aug_v2a.00301.t1 |
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Definition | - |
>aug_v2a.00301.t1 nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgaaaccgtaacattatcaccaaatatggttgctgatatacctt gtgtgattgagggggtgagtggtcacaaggaatatgtgggtgtggttgaaccgggaaataagttctcagaaaggtattct gttagagccttgcggactgcagtaactgtaaaagatgggcgaataccagtttgtgtctttaattgcctcaacaaccctga gaaaatttatcactgcagcagtgttggagacctccacccagtagtggatggaggtgatctgcctgataaaggtgcgagtg agggttacaaagttgtaaagggggctaaagaacagatcatagagccttccgaatccccgtggtcctctcctgtggttttg gttaccaagcctgacggcactcaacgtttctgtgtggactatcgggctctgaacaaggtaaccaagcaagacttgtatcc atttccacggtgtgatgacatattggagagcttagctagtgcacagtggttttctcaccttgatctgctccgtggatatt ggcaaatcgatgttgtggaagaagatcgggagaaaacagcctttgcaaccccggacggtctttaccaattccgcaagtta agttttggccttactaatgcaccagcatgtttcatgagggccatgtatcttgtcttaaaaggcttgtgctctagatgaca tcattgtctttggccgaacgctacaggagcatagagagagactgtcactggttttgtcacgtttgtctgaagcaggcttg aagattaaccctaagaaatgcaaactcttgtc |
Protein
Protein ID | aug_v2a.00301.t1 |
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Definition | - |
>aug_v2a.00301.t1 MVADIPCVIEGVSGHKEYVGVVEPGNKFSERYSVRALRTAVTVKDGRIPVCVFNCLNNPEKIYHCSSVGDLHPVVDGGDL PDKGASEGYKVVKGAKEQIIEPSESPWSSPVVLVTKPDGTQRFCVDYRALNKVTKQDLYPFPRCDDILESLASAQWFSHL DLLRGYWQIDVVEEDREKTAFATPDGLYQFRKLSFGLTNAPACFMRAMYLVLKGLCSR* |