Gene
Gene Model ID | aug_v2a.00303 |
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Locus | scaf122 : 9395 ... 13063 : + |
To GenomeBrowser | scaf122:9395..13063 |
Genes list of scaffold | scaf122 |
Manual annotation
Study field | Retrovirus |
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Gene name | Adi-Retrovirus-related 13-5 |
Description | DNA sequence of this gene model showed similarity with that of Adi-Retrovirus-related 13-1. This gene model contains RVT_1 domain. |
mRNA evidence |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
aug_v2a.00303.t1 | gi|688572459|ref|XP_009303237.1| | PREDICTED: uncharacterized protein K02A2.6-like, partial [Danio rerio] | 4.06377e-44 |
aug_v2a.00303.t1 | gi|542172242|ref|XP_005467353.1| | PREDICTED: uncharacterized protein K02A2.6-like [Oreochromis niloticus] | 4.00001e-40 |
aug_v2a.00303.t1 | gi|641783567|ref|XP_008174156.1| | PREDICTED: uncharacterized protein K02A2.6-like [Chrysemys picta bellii] | 3.0e-39 |
Transcript
Transcript ID | aug_v2a.00303.t1 |
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Definition | - |
>aug_v2a.00303.t1 tctaaagccgaatggaacaattagaatttgtggtgatttcaaagtaactctaaatcagtatttggatgtacctgagtacc caatgcctacttcagaagaactgtttacaaagttaaatggaggagagttgttcactaagttggacctaagtcatgcctac caacaggtggttctggataagaagtcacagccctatgtcactgttacaactcacttaggactgtatcgatacaccagact tccatttggggtagctgctgcacctgcaattttccaacaaatcattgacaagatgttagatggcctgagtcaaacaagag ggatcctggatgatttaactgtcactggtgaaaatgacgagcagcttgcacgcaacttatacaagactcttaagaagttt gaagagtctggagcaaagttcaagaagtccaaatgtgtcatcatgcagcccaagattgagtacttcgcatttgtgccgga ccgtcacggcatccatccatcccctgcaaaggttcaagcaatcctcgatgtacgtgacccccagaaccgaagtgaactgc aatcatttcttggtctagttaattattaccgcaagtttattcctaacatgtcaacacttgtcagcccattgaatcaattg ctgtcaaaggacacgccttggtgttggagtcctgagtgcaaaggctcatttcaagcactcaaggacacccttgcttcgtc agcgtgttagctcactacagtccaaattggaaattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgttgcactacctttttcacata tgtcttaatgaatttaattgtgatcacttaattgtatatgactttgaagcacaagaatttggtataaaacaagctgatta gagtcaaatgtctatggaaaaacgagaaagctgacgctttaagcaagtccttagtcagagcaaagataaggggccaaacc atctaacttcccagattctcacaacactaaaaacacagcccccccatatttctcacaacacttaaaacctttcatttgta tgattttgaaagtctaccaattttaatttcttctcagctagagcaaactaagagaaaaagtaatgcaggaaaatattcct cattggcaagtgaaatagccgaggttagtgcatccgtttatttgaataatttggtgttaacaacaggtcctgagattttt aatgtttgtgtttttttctttgcctcctcacttgtaacctctcaattcaggttacattacaagtggaaaaggatcagact gaactggaagtagaagcaaccaagcttgaaatagtcaaggtattaatttgaaataattcaaggctgcttaatttgaaacc agaaagggtagaagttcacaaagttaatacaagtacgtaatagaccctattcatggcggccaagaattattgttgttaaa atatattcttttgtctttgagctaatcaattcctcaccagcctcactttatagcaaaaatgaattcttttgaattttgtt tgtgctaatgaggcttgtgagggtgattagcataaacacaatagaataatgatttttttgcttagccagaaaaaatgatt tataaaattatacagtcaatattgtaaaggagcatctgttatattaagaattcattagactaaattttcaaagtttgagc ttgaaaagaaaattgttattattttactgcaacggaggttgataaagcatttaattttcataggcgaagaaactaaggga atccatgctgcagatgtctgatggtctgaaccagtgggcgtcaaaaacaatgttagttgctgaagcttacagcaagctgg caaatctgattccagacactccaactcaggtttctgaaagcaagattttccatggtatgtaaatgaaataaaattgccac attttcaggcatatggtaccactagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnacaagaattattattattgttgtt agttctttcaaaacaaacaatagttaacccaactcttatgacttatagcttgcagttcaatatctcatccaaaatggtaa cttccatggagatctttttctgtcttgtgtgattgtcagccgctgttatcatttggttacaaagagcaataattattgga caatatttcttttttatactttgtgagaaaccgggatcacttagataaattacaaatacgtaaaacctgcaataatgcgc gcactggtggctcagttgttgagcatcgggctgtgacgtgggaggtcgtgagttcgactccgaccggaccaacacttagg gtcttaaaataactgaggagaaagtgctgcctttgtaattacatcagcaaatggttagactttcaagtcttctcggataa ggactataagccggacatcccgtctcacaaccttaaataactgtgggacgttaaagaacccatacactagtcgtaaagag tagagcatgaagttcccagtgttgtggtctggcatcactcattctgttctgggcgcacctgtgaatactacttcttacat taaaagaaagattgtgaactgcgccataaagcagtctggcaaagtcccccacaaagtgttgtaaagcgcatttgaatata tccacatagaaaatgcgctatataaatgcattaccattaaaataacactgtataggttgatattcttttgaggctgaggt gatgttgccttgattttataggtagttgtgagtcacgcaacattgtgaacaaccttgcaagaggtcttattattgaccca aagctattgcaacagttggaaaacatgtcacattcatcactatgcaatttatacgcagtctcgacacctatcctacctgc gcagcagaatgttgctcaacaaaatcatgtgggcctcagcagtgagaaaatgcctggcaaagcaaagacaagccagtagg acacagtgggatgtcaccgcaagccttgcgtcactataatcttaaggctaataaagtgggcccgaactt |
Protein
Protein ID | aug_v2a.00303.t1 |
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Definition | - |
>aug_v2a.00303.t1 MPTSEELFTKLNGGELFTKLDLSHAYQQVVLDKKSQPYVTVTTHLGLYRYTRLPFGVAAAPAIFQQIIDKMLDGLSQTRG ILDDLTVTGENDEQLARNLYKTLKKFEESGAKFKKSKCVIMQPKIEYFAFVPDRHGIHPSPAKVQAILDLEQTKRKSNAG KYSSLASEIAEVTLQVEKDQTELEVEATKLEIVKAKKLRESMLQMSDGLNQWASKTMLVAEAYSKLANLIPDTPTQVSES KIFHGSCESRNIVNNLARGLIIDPKLLQQLENMSHSSLCNLYAVSTPILPAQQNVAQQNHVGLSSEKMPGKAKTSQ* |