Gene
Gene Model ID | aug_v2a.00473 |
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Locus | scaf205 : 22356 ... 27118 : + |
To GenomeBrowser | scaf205:22356..27118 |
Genes list of scaffold | scaf205 |
Manual annotation
Study field | Retrovirus |
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Gene name | Adi-Retrovirus-related 56 |
Description | This gene model contains zf-CCHC, rve and RVT_2 domains. |
mRNA evidence |
Annotation by Blast2GO
Annotation | GO |
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retrovirus-related gag-pol polyprotein | GO:0043167 GO:0097159 GO:1901363 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
aug_v2a.00473.t1 | gi|546297318|ref|XP_005710191.1| | unnamed protein product [Chondrus crispus] | 0.0 |
Transcript
Transcript ID | aug_v2a.00473.t1 |
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Definition | - |
>aug_v2a.00473.t1 taagtaaagtttacagacaatgtacttgatttcgaagagagacagaagttcggttcgcttagttcgagctaggtttgtta cagtcactgttggagcggatgattgggcgcggagcgggcgtatagcggagtttgaaccgttgctttggtaagtggtaaca gtgtgaagttcgatctgaatagtaagtgattgtgattctattcttttaacattaaaaagtataatgttttcttaaggtag cacgtaaacattattccgactgttttttaggtttcgcagtcggactttcgggcgacttgactttacatgaacataatgtg agcgtagggtacccacaaaagtttagaaaacaattaattataaaatatactttgatgtttacgccacagtactcactttt gtcgccttgagctttatggtaattagctactgttacaataataataatcatgtgtgctgtgattcgttatcctgaaggtc atgtgacacctagtaccatgttactgtcacgcgttgagttaaaataataaagaaggttaaaaggagaatttctatcaggt tatgggcccaggataacgctccgaaaaaaaaacagggatttcgagaaacagcggtgtgagaacgtcacgtttgtattgtc cttttaagacgtgttaaccgtacatcgtcggtttgttcaggatggcggaaatcacaaaaattgaacccctgagtggaaag aattaccaatcgtgggaatataatatcaagcttgttttgatagaacgtgggttgtggggatttgtcgaaggaacagagaa tactcctaacagtactgcgacagatgcagtgcgaaatgcgtaccgtcttcgctcggacaaagcttattctttaatcgctc tcagcgttgacaaaagtttgcaagttcatatttctttgacgaccgatcctcgtgcagcttgggaagttttacaaacacaa tttgaatgtgtttcgatagcacaaatagttcgactaaatcgcaagttttatgccgctacgatgaaagaaggaactgatct tatggagcatctgatgtacatgacttcgttggccgagcaattacgcgaattaaaggaggaaatcactccacagaagctcg caaccgttgaccttggaagccttccagagtcatacgataatttcatcagtagtctaaatactacgaaagtggatgaattg aattgggacaacattaaaggtttgctgatcaaagaatacaagaaacgagaggaaaaggaagacaagcgatgtgatgttaa ttttggcgggaacgaagcattattttctgacaagggcaattcaacatggtctagagggagaaagtatcgacgtggtggcc gaagctttggaaatacaggaaattccaggcaacataaccgtcaagggtcaaatcaaagtcccaaatgctacaaatgtcaa caagtcggccattttgttaagaactgtccactcaatcgaaagcatggtcattcaagcattgcagaacatgattgcaagca gcaaaatgatgatatagccttgaattcgagcattattcgtcggaaactagacaatcattggtacatcgacagtggtgcta caaagcatatgacctttgagaaagatttgattgttgatttcatcaagtatgagcaaccctcaaagatataccttggtgat aacagagtaattgaagcttatggacaaggaaaggttagactctccttttatgatgaatcagacgctgttcagctaacact gaacaaagtattgtatgtgcctgacttatcaaagaacttgttatctgtttctgctatgacacaaatgggagctgaagttt tatttaatgatggaaagtgtgtcatctcaaaagatggaagagaaattaccattgggcgtctaatagacaataagctctac atggtaaatacagatgaagaagctcacattacaagtgcacaatcactatcacttgagcaatggcattgtagatttggtca tttgaatcacacatatattgatcaattgatcaaagacaatctcgttgaaggcatgaactgttcaacaggtaaagttaaca gagaatgcgaagcatgtgctcaaggcacgatgcacaggctcccttttcccaagaaaagtgaaaagaaaacatgtcaaccc cttgaactgatacacagtgacctttgtggaccaatgaatgttgattctattggtggaagcaagtatctccttacattaac tgatgattataccagatatgtcacaatgtacttcatcaggagcaagtctgaagtgttgtcgaagtttatggagtacgtca gcagggtggaaaatgaaactggtctgcgagtacgagcgatcaggactgacaatggtggagaatatacatctcaatccttt aacaagttttgtgctgacaagggaattgtgcatcagtttactaacccgtacacaccagagcagaatggtgtctcagaaag gctgaatcgcacactgattgattcagcaagatccatgctctatcatgcaaaaatgccattaaagttttgggccgaatcca tgaatactgctgcatatctacataatcgaagtcctacaagtgcactgaaggacaaaacaccatttgaaagttggtttggg aagaaaccaaatgtatcaaatttgaaggtctttggaagtgtctgttttgtccacactccagatcacttgaggaagaagct tgatccaaaatgtcgcaaggcaatatttgttggatatcccctggagagtaaaggctacaaggtgtatgaagttgatgcta aacgtttcacaagaacaagtttcatacatttgaagaagtcaccaacagcacacctttctacaaagacagtgtgattgacg atacacagccagatgatgtcaaagatgagccagaaatgccctctactgccacagactcctcagaggatgtaccctcagtg ggagctacctatgaggataagtttatgcagcaagtgagaagtcttggtccaaccagacagagaaaagcgcctgagagatt tcatccagaagattgttttgtttcagaattgttaactgccgagaatgaagaatcacagtctatgaaagaagctttggatg gtaagaactcaaagcagtggaaagaagccttggatgctgaatacagttcattgatcaacaatgaaacatgggagttagtg ccaccaccattagatgctaacatagttggatcaaaatgggttctgaaggtcaaacgagatgcaaacggcaacatcaacca atataaagcaagactcgtcgcacaaggatattcccagacacaaggaatagattacgaggaagtgttctctcctgttgcca gatactcaagcagcagaacactgttagctttggcgaatgcatacaatctagaagtgcatacaatctagaagtccatcaaa tggatgtcaagacagctttcttgaatgggataatcgaacatgacatttttatgtctcaacctgagggattcattgatcca gatcatcccaactatgtgtgcaagttgaagaagagcttatatggcctcaagcaatctgctcgatgttggaatcaaactct cgacaatttcctgatagcaaatggttatcgaagaaacggagcagataactgcatttatgtgaagtcagagaagaaagatg atggatttatcagttttgttatcttagcaatctatgtggatgatatcattccagtatctaatgatgttaacatgctcaaa gtagagaaggaatctttatgtcaagaatttgaaatgactgatcaaggagaaattcactttatttttggaatgtcaatcaa gaggaaccgcactactaggacattgtccattagtcaagagaagtaccttgaaagtttgctcaatcaatttggaatggaag gatgtaaacctatgtcaactccactagatccgggaaagaaatttcacaaacgaacaggtgaggaagaacaatgtgatcaa agcatttaccaacaagccatagggtgcctcacctatgtatcaacagctacaagacctgacatcaccgcagcagttggaat tctatcacagttcatgtctagtccaagcaaggatcattggatgggagtgaaacgagtgctcagatacattaaaggaacaa tgacttatggtttaaagttttcgttgaatggtcatgaagttgatttgtatggtttttcagatgctgactgggcaggggat acagataaccgacgttctacgtcgggatatgttttcaaagtggctgattctacaaccagctggtgcagcaagaaacaagg cactgttgccaaatccactacagaggcagaatatgtagccttaagtcaagcaacacaagaagcaatctacctacggaaac tattagctgatcttggttataaagctgatttacctacagtgctatatgaagataatcaaggtgccatagagatctcaagg aacccaagattccacaacagaacaaagcacattgatgtcacttttcattttattcgtgaaagaatcgcttcaaatgaaat cagagtggtttattgtccatcgagtgatatgttggcagatatcatgactaagggacttactaaaaatagatttgaagaac tcagaaactcactgaacgtttatgcttgttaaaaggagttcattgttgtttttttgtttaccacagagaaacacatcaca tgcttattaagtgggagtgttacaataataataatcatgtgtg |
Protein
Protein ID | aug_v2a.00473.t1 |
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Definition | - |
>aug_v2a.00473.t1 MYLISKRDRSSVRLVRARFVTVTVGADDWARSGRIAEFEPLLWMAEITKIEPLSGKNYQSWEYNIKLVLIERGLWGFVEG TENTPNSTATDAVRNAYRLRSDKAYSLIALSVDKSLQVHISLTTDPRAAWEVLQTQFECVSIAQIVRLNRKFYAATMKEG TDLMEHLMYMTSLAEQLRELKEEITPQKLATVDLGSLPESYDNFISSLNTTKVDELNWDNIKGLLIKEYKKREEKEDKRC DVNFGGNEALFSDKGNSTWSRGRKYRRGGRSFGNTGNSRQHNRQGSNQSPKCYKCQQVGHFVKNCPLNRKHGHSSIAEHD CKQQNDDIALNSSIIRRKLDNHWYIDSGATKHMTFEKDLIVDFIKYEQPSKIYLGDNRVIEAYGQGKVRLSFYDESDAVQ LTLNKVLYVPDLSKNLLSVSAMTQMGAEVLFNDGKCVISKDGREITIGRLIDNKLYMVNTDEEAHITSAQSLSLEQWHCR FGHLNHTYIDQLIKDNLVEGMNCSTGKVNRECEACAQGTMHRLPFPKKSEKKTCQPLELIHSDLCGPMNVDSIGGSKYLL TLTDDYTRYVTMYFIRSKSEVLSKFMEYVSRVENETGLRVRAIRTDNGGEYTSQSFNKFCADKGIVHQFTNPYTPEQNGV SERLNRTLIDSARSMLYHAKMPLKFWAESMNTAAYLHNRSPTSALKDKTPFESWFGKKPNNKFHTFEEVTNSTPFYKDSV IDDTQPDDVKDEPEMPSTATDSSEDVPSVGATYEDKFMQQVRSLGPTRQRKAPERFHPEDCFVSELLTAENEESQSMKEA LDGKNSKQWKEALDAEYSSLINNETWELVPPPLDANIVGSKWVLKILKQQNTVSFGECIQSRSAYNLEVHQMDVKTAFLN GIIEHDIFMSQPEGFIDPDHPNYVCKLKKSLYGLKQSARCWNQTLDNFLIANGYRRNGADNCIYVKSEKKDDGFISFVIL AIYVDDIIPVSNDVNMLKVEKESLCQEFEMTDQGEIHFIFGMSIKRNRTTRTLSISQEKYLESLLNQFGMEGCKPMSTPL DPGKKFHKRTGEEEQCDQSIYQQAIGCLTYVSTATRPDITAAVGILSQFMSSPSKDHWMGVKRVLRYIKGTMTYGLKFSL NGHEVDLYGFSDADWAGDTDNRRSTSGYVFKVADSTTSWCSKKQGTVAKSTTEAEYVALSQATQEAIYLRKLLADLGYKA DLPTVLYEDNQGAIEISRNPRFHNRTKHIDVTFHFIRERIASNEIRVVYCPSSDMLADIMTKGLTKNRFEELRNSLNVYA C* |