Gene
| Gene Model ID | aug_v2a.02835 |
|---|---|
| Locus | scaf961 : 200299 ... 209433 : - |
| To GenomeBrowser | scaf961:200299..209433 |
| Genes list of scaffold | scaf961 |
Manual annotation
| Study field | Collagen |
|---|---|
| Gene name | Collagen Domain Containing Protein10 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| collagen alpha 2 type v | GO:0005581 GO:0016043 GO:0044707 GO:0044763 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| aug_v2a.02835.t1 | gi|751774878|ref|XP_011214077.1| | PREDICTED: collagen alpha-1(V) chain-like [Bactrocera dorsalis] | 4.0e-35 |
| aug_v2a.02835.t1 | gi|544406954|ref|XP_005543895.1| | PREDICTED: collagen alpha-2(IX) chain isoform X3 [Macaca fascicularis] | 5.0e-34 |
Transcript
| Transcript ID | aug_v2a.02835.t2 |
|---|---|
| Definition | - |
>aug_v2a.02835.t2 ggcgaaaggggagaatcaggaaatgagggcgagaatggaccaacagggccaaaggtatgtgacaacgtagccaactttac gctgatttatgccgatgaacatttctttcagtagttgaactttcattttggtagggaactgatggacttccagggaagat gggacaacctggagatcgagcagactttgtaagttgcattgcggtgaaaattcaattcaaacaatatcactctaaaacag agtcatataaagagcacatcgctcatttatttgtttgtaggggttacctgggaaagatggacccaatggagcacccggaa cgactggagaaaaggtttgataaactttttctcacaaagagttcagaaattctcccttaacgtttagtaacttgattcta tcaactgctataattattcatccacgctctttcttttcttacaggggatgccgggaacagccggtgcgcaaggtgctcct ggtccacaaggatcgaaaggaatgcagggaagcaggggctacagaggatcccacgggtagtttggaaacgatgttagtaa taatgctctcgtgtcttacataaaaggaccgaacttggacaagtgaaatactgctgttaagctcaatactgcattcggaa ttaacttacaaatggacctgagggttcatgtttctacattttgttaagtgcacagacaaagcattaacacattgctgtag tgtgtcctcgaaagaaaaagtgtgactttgtttgaacgttcactaggcagttcatgcacttgagtgtgagttgttatcta tttgaacagggtcccatgggagctacaggagatcctgggttacccgggaaacaaggcgacaaggtacaaagatgctaaag tactaacttcagatttttattgacatgttatcgttagaaataacatgtaggtcttgacacacacggcaaatataatatct gacatatgaaatcataaatgtgtggtttgcagggtgactccggtgaaccaggaggtgttggagagataggaccagagggc cgaaaggtagctaccaaattgtgagattttagcttatttttcaacggtgattaaattgcctctgttttgccttccccgat aattcctaatccccaacagttattaacatagtgggtggatataaaaattgaaaaaaaaataatagcatagatataaatcg nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaggtgtgttacagc agaaatgtatggcgtcttcagggtcaaaattaagtgtacagttaccacacaaattgaattgcaacagaagtcatcgactg acaatcatcacgtaagaaaacaattcatttggcaattcaatttatgtggaaactactatacccttaattctgaacctaaa aacgcgccattgataaaatgattgtgtatttcttgtaggttcaaagagatgaggacaacagtgagcccttgcagacttct tctgaagtatgttacgccctcgatgtctgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaattggttgaggacagcaaaagctcaatctgagtagtttcctaatc attttcagatcatttcagttgcattcacagttctttccatattaattttagggccaactagggcccaagaaaactaaaaa acgagaatctagggcaaagaatttttatttgaaatttctcttaggatacgaccatctacgacgtgctcaaaactgagctg gaatccttcgtgaaatgtcgaagacccctggttccaaagcgccacgcggccagaacatgccaagacctgaagcaacttga acccaatgctaggaatggtatgattaacttgtttcttccttttttttacgcgggagggggggcagcctctgcaataatat gtttctcttatagttttaatcggcattcatcagctggacataggagacagtttattctgtgatcagtgattttcgaatta tcatcttgtcacccttgccaatctccatctgtttactgaattcatccaaataatgctgatagtcctctatctgtcttttc tttcagggtattactggattgatcccaatgaaggaccaacttatgacgcagtacgggtttactgtgacttcgcaatcaat gcaacatgtatttatcccaacaaaactaaggtaaagtgaaaccggcaggaaatggtacattcgtcctttctgtgatctcc cccaaaaaagcatttggaaagataaccctgtttaattctatcactcttattttatagacaggtaataaaaaatggttctc tggacctgacggctacaaatggttcgccacggagtttggcaaaagcttgcaggtaacctttacaacaataaacttgcata cttcatgaccacaaagaatagctgtgtaaaagcaggctagaaccgttgctctgacggggctttagcgcagaggaagcgat ttgtggagttaccgcgggaaaaggcattatgactttcacaacatct |
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| Transcript ID | aug_v2a.02835.t1 |
| Definition | - |
>aug_v2a.02835.t1 cgtatcttgctttgaactcagttgcatccttatctccgtcttagggtttcaaaggagatgcaggtggaaacggaatacca ggaaaagaggtattatgacatggccagcaaactcgtgcaatttcaagcaatttgcttagtcatcagcgtgttccataatc tcatggacgcacgctgatgacgcagtgtagccacaatgcatatctgtaagctttcaacgggtttgaagaaactaggattt ggtgaaaataatatcaatgttcatggtgtgcatccgtcgagttatggatgcacttgggaagcacacgaaagctagagtcg cactcagctatcgcctcgtgagactatcacaattctctcttgcttaataaactcccgaaccgtgaactaattgttaatta atgctatgataaatttcattttcaggggaactctggcgttattgggaaaaacggagttgcgggtgaaatggtgagaaaat gccattctgccaaagtaacagcgtctatgattgtctctaagctatgatgttttactaatgacttttttgttacgggcagg gtggtactggtttacaaggtgaacaaggagatctggggagaactggtcccgtggtaaagtcttaaaatatgtgatactta cggcaatcagttacattggccatacacgaaggaagatatataatattaagccaacctttcggttagtcaaccagccaact gcgtcagataacaagtctgttacacggtcagacggttatataaagaaattgagccacaccagccagcaagtgtttagtgt ttcagccaatcagtgactcaatcaatttgacctaatgatttacgtctttcagggggaacatgaatttatgttataagcct ctattatttctttatgtcttcagggactacccgggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn gtgtcgcttgggtcaaactcaggtttttatcctagggttcacatggtaaacgaggaaaagaagggccagtgggtgaccag ggagtcaaggtatggttggtagtgcaaaaatgtctgttacttttctagcattgtcattggctaatgtgacgttttatatt cgggttttgtggccactgatcacgtagttgaaaaatcatccgtgcatttcagggtgaacctgggaacgatggaatcgcgg gagttcatgggactcctgggaacaaggtaaagattacttaatagcaagtgaaacagctaaactttgaccaggtcagcatt gttctgatagcaatatgcaaatttctgcgctctagggagagaaagggggtcctggagtcagaggtcgtgtaggatatccc ggaccaacggtgaggttttattgtttcccattttgttctcattcatctcttcattcattcaaccgtttgtttgtcaatgt gtctgtccattgtttcagcgattcatctgtaagttcgtgggaaaagacaagcagatggatggacggagttgtcacccatt ttttcctcttgttatgttaagatatttcaaactatttaagtgtatgtcgaaaaatcactgtgtctgtcgtcgcatttatt gacaaaatcaaatcgcttctttgttcgtgcagggacccgatggtgacctagggcctcaaggatcacgtggcccatcagga gctaaagtaagtgcaatgacaactttctcttgcacggaatttgaagcccaaatagaacaaaatgaaatttatttggtgcg actttgtttgcaattcagggtccgaacggcgaggatggactgcctggaatacagggagagactggaacggaggtaagtgt caaagcacggataaggagctgaagcacgtgacgtatttaagccactgacggcaatcagaagtgagctgtgttcttattta ccttgtatttacaatgcgacatttatattgtcaaacatcttttcacttgtagaaatctgggagataccactgtcctgaca tacaaaatgtccacttccggtttccgtccgtgtctcaaaaacgtcgggtgattaagctctctggtgttttaaagtcaact tggttaaataataagtgctgtgttaaaaacaagcacgttcctaaatagtatttttagcgtgcaaatgtctatacatttcc gtttggttttatcatatcagggagccatgggatccgcaggtgctaaaggtgaaaccggaagtagaggtgaactggtcagt aatgattgatagctcatgcaaaattaacctttgttctctattatatggcagttctatgcctgcttcaacgctcccttttt tggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcagggtataccaggtgctttgggggcaaaaggagcgccaggcgaa cccggattgatggtatgatttgaccaatgtcattggaaggttagaaagttaatgttgttgatgatatgttcaatttcagg gagaacgtggcgacgaaggtgaaatcggtgcacaggggcaagatggagccaaggtaatactcaaggttgttacgctataa agctaactgggattattaccccataaagctacctttcctaatgaaacctcaccaatttgaatagaaaatcagtgagagca gacttgggcctgtgagcaaaacaaagtgttttgaatccttgatgtttaatatcctgtttcagtttgttcattggttgttt aatcttagggaattattggcgacagaggagtcccaggctcccgcggtcaacccggatttcctgtaagtttctcgagataa acgtcatattgtaagtaaacgccaatattgcacttcttgttgaagaacgctgcttaaagcacttctttcttcatcaaggt gtcacatgtgttcatctttttagggagaggaaggttcttttggcgcatctggctcagctggacaaaatggtgttcaggtt agaaaaaaagtagcaaaagaataattgattgtcacatgtactaatcctacaacatcgatttatttttggggttgtttgca acagtcgatttgctcttttttaattgcgccctcgtttgctttaacaggggccgataggttcgcctggtgccgctggtccc tctggtaataagggtcccatggtcagtttaatcgtttgatagtgtgcttgaatgtggagagtttccctcttgaaaagaag agcagaagctgtagcatgcattttctgtcgtattttcaggggatcattggtccgcgcggcccgtctggaaaaagaggaac tcaaggctccaaggttattttttttttcgtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatcataaccacaaaat caagaaaatacttatgtttctatatatcgtacgtttttgttatcttaagggcgaaaggggagaatcaggaaatgagggcg agaatggaccaacagggccaaaggtatgtgacaacgtagccaactttacgctgatttatgccgatgaacatttctttcag tagttgaactttcattttggtagggaactgatggacttccagggaagatgggacaacctggagatcgagcagactttgta agttgcattgcggtgaaaattcaattcaaacaatatcactctaaaacagagtcatataaagagcacatcgctcatttatt tgtttgtaggggttacctgggaaagatggacccaatggagcacccggaacgactggagaaaaggtttgataaactttttc tcacaaagagttcagaaattctcccttaacgtttagtaacttgattctatcaactgctataattattcatccacgctctt tcttttcttacaggggatgccgggaacagccggtgcgcaaggtgctcctggtccacaaggatcgaaaggaatgcagggaa gcaggggctacagaggatcccacgggtagtttggaaacgatgttagtaataatgctctcgtgtcttacataaaaggaccg aacttggacaagtgaaatactgctgttaagctcaatactgcattcggaattaacttacaaatggacctgagggttcatgt ttctacattttgttaagtgcacagacaaagcattaacacattgctgtagtgtgtcctcgaaagaaaaagtgtgactttgt ttgaacgttcactaggcagttcatgcacttgagtgtgagttgttatctatttgaacagggtcccatgggagctacaggag atcctgggttacccgggaaacaaggcgacaaggtacaaagatgctaaagtactaacttcagatttttattgacatgttat cgttagaaataacatgtaggtcttgacacacacggcaaatataatatctgacatatgaaatcataaatgtgtggtttgca gggtgactccggtgaaccaggaggtgttggagagataggaccagagggccgaaaggtagctaccaaattgtgagatttta gcttatttttcaacggtgattaaattgcctctgttttg |
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Protein
| Protein ID | aug_v2a.02835.t2 |
|---|---|
| Definition | - |
>aug_v2a.02835.t2 MRARMDQQGQRELMDFQGRWDNLEIEQTLGYLGKMDPMEHPERLEKRGCREQPVRKVLLVHKDRKECREAGATEDPTGSL ETMVPWELQEILGYPGNKATRVTPVNQEVQRDEDNSEPLQTSSEDTTIYDVLKTELESFVKCRRPLVPKRHAARTCQDLK QLEPNARNGYYWIDPNEGPTYDAVRVYCDFAINATCIYPNKTKTGNKKWFSGPDGYKWFATEFGKSLQVTFTTINLHTS* |
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| Protein ID | aug_v2a.02835.t1 |
| Definition | - |
>aug_v2a.02835.t1 MGGTGLQGEQGDLGRTGPVGSHGKRGKEGPVGDQGVKGEPGNDGIAGVHGTPGNKGEKGGPGVRGRVGYPGPTGPDGDLG PQGSRGPSGAKGPNGEDGLPGIQGETGTEGAMGSAGAKGETGSRGELGIPGALGAKGAPGEPGLMGERGDEGEIGAQGQD GAKGIIGDRGVPGSRGQPGFPGEEGSFGASGSAGQNGVQGPIGSPGAAGPSGNKGPMGIIGPRGPSGKRGTQGSKGERGE SGNEGENGPTGPKGTDGLPGKMGQPGDRADFGLPGKDGPNGAPGTTGEKGMPGTAGAQGAPGPQGSKGMQGSRGYRGSHG * |
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