Gene
| Gene Model ID | aug_v2a.02836 |
|---|---|
| Locus | scaf961 : 210075 ... 217984 : - |
| To GenomeBrowser | scaf961:210075..217984 |
| Genes list of scaffold | scaf961 |
Manual annotation
| Study field | Collagen |
|---|---|
| Gene name | Collagen Domain Containing Protein17 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| collagen alpha-1 chain-like | GO:0001501 GO:0005583 GO:0009790 GO:0009887 GO:0009888 GO:0022603 GO:0030198 GO:0043170 GO:0043588 GO:0045595 GO:0048523 GO:0048646 GO:0050896 GO:0071822 GO:2000026 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| aug_v2a.02836.t1 | gi|170029346|ref|XP_001842554.1| | conserved hypothetical protein [Culex quinquefasciatus] | 5.0e-31 |
| aug_v2a.02836.t1 | gi|327275855|ref|XP_003222687.1| | PREDICTED: collagen alpha-1(I) chain [Anolis carolinensis] | 2.0e-28 |
| aug_v2a.02836.t1 | gi|194388568|dbj|BAG60252.1| | unnamed protein product [Homo sapiens] | 1.0e-27 |
Transcript
| Transcript ID | aug_v2a.02836.t1 |
|---|---|
| Definition | - |
>aug_v2a.02836.t1 gatttaaaaggaagtccaggaagtaggggactacctggtaaaagggtaagtgccttgcaggctgaactagttttatcaac gagtctttttcgccgccttcattgacacgagttgggcatgcttcttttagggcgtggtgggaaagccaggagaaaccggc caagctggcgaaattggctttgatgtaagttgggaatcactttcttgggactcatttcatctcgctgatataagttaacg taaactatacaccgactcttcctttagtgggtcggtataacacagaattgatttcgtgaaaaactgtactttggagttca ctgatcagcgaatggttttaactttttatcaccagggagaacccggcagtcccggaattccaggcttacccggtagggac gggactcgggtaagtcttggatcgcgtaccttaagttcttatgggtcaactctgggcacgttctcaagaaactggccatg taacaaaactgaggaattttcatcctcgcgcaaggggaatcatgctgcatttttacgttaaatcagatcattttgaaatg cattggcacttttgataaaggggggaaaatagtgttcttccagtggcaagccaagtgaacccgagcttctactggagaga ggtttgcattcacatctgctgtttcgagtatagccgactgaatgcgtttcaatatgctttaaagtctgcttcgcatatgg cagatattgcgagcagtttcaatgtcattttccaacttaccggagttagtaattgacacgctttttcttaatcatgtgtt tcgcagggcgaaagaggaaagcagggaaaacaaggtctacctggatcgaaaggttatcaggtgtgaaaatcttcttatct ttttgtgtttctggagtcgtcgtcgtcctccgtccatctcgaaggatgatggctgcacgctgttgggtcacgtccgggtg ctgcacttccactgatggcttcacagccctattctggagtggcagtctctggagcaagtggggcagatgtagggtggtgc tgttgtatcctgcttggatctcgccctgcgctcagccctcttctgctgctgtgtttctggagtaattaacagcaaattgt acccactggatatcagagatctttcgtggacgctttctgtcaacttacttaataagaatgtcattatttttctaaggaga gactcatttctcaagcggatttcgacgcgtaaggccgcatttaactggactttggatctcggtcacagagtatgaaggtc tctgtgtacgaacaaagaacgcttttctggcccttgatttcctttttcagttatgctgtccttcggatgaaaattattta tcgtattgcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntac ttctttcaattttatacgatgatacggacaatacagacttaatttcatttctcggttcctttcttatttcagttcttgtt tgttggatttatttgtttgctcatgagattaaattaacccgttattgcatactgttttcacagggaaggcaaggcaattc cggtgaaatggggcaaactgggccagtggtaaattatttcattttatgtccctctaagcagacagcgaaagtagcctagt tgggctggtaacaatttattacaatccaggaaatgtgaagatctcaaaaagaatgcgtgaacatacttgagtttttccac agggtcagaaaggattagacggacctccgggtttacccggccccattggtgatcccggatccccagggtttcctggtcgt aaggggccccacggatttcagggagaaggaggctctagcgggccccgagggaaaaagggtcaaactggaaacagtggcca tgatggcgttcaaggaggtcccgggtccaaaggaagagaggttagtaacggtttcgacctaataatggaaatgaataaaa cagattttcgcaggttgctccttctagtgtgcttcttgtctgtatgcttccttgaggatattcgcttaagtagagaggtc aaaactcccgttttgttggagtcgttttagagtgtttttagataaatcatgttaattctgtcgagtatagtttatttaca aatgagctcgcacgcggccatggcttgcctggatgccggatctcagtcgagcaagcagccggcatgttctcgggctcttc tgtcccaagagttgcgcaaagagtggatagtgccatccgctgtataaatcgctatccagcggataagtgcaatcaaaatt aattgagttttgcagtgaatagtgatttattcaatggattgtgctgctatccaccctttgagctactggggcctattgta tagcgcgcaggggcttggtgcctagcttcggttgcgtaccatacaagagaggaggctgcgtgcactgtggctatggatga agctgtaattttcattttgtattgtcttttaacagggtgacggaggaatcactggatcagagggcgcccaaggagctgct ggcgaacaggtagttcttcttgtcatcgttgattgcttaaaacaatcaccactgctgataacattgtgtcagttgccaga gattgagctgttgctgtgaaatgaaaataaaagagacgttaggagcaacaaatgtcagtaaaaccaatctctctttaatt tgctttgaatcgtttctaagactagtatttccgtgtgtgttaaacaccgtaaaatgtacctgtttttgcttttagggaag tgcgggtgatgctggaccgagaggaggcaatggaagaccggtagagtttatagaacacactgttcatttttgaggtctca catctgttaaatatagttttacgtcccatccctttaaagtgcatagctatttaattctgcaatatgtccaccttttcttt gcagggtgagtatggagctcgcggaaaacgaggaaagtccggggacaacggcaaacctgtaagtctttttttcgcaggca gcatgacatttcccttattaggcttattatcgcgtctacttaaatgaaaacccactagatctgtaaaaccatcttgagtg cagtgatatcagttggattataccatttacacctctagggtcgacagggggtttcagggattcgcgggctgccgggagaa actgggacaaaggtgagttaactaaaagacttgctattacgaaagtcttacgctcgaaacgtcagtttcacaatcttttt aaggttggtaacttgacctgtatcaactctactcatttgataccaaattttggtgtaatttgagaatacaaatatgttag caaggaccaaacgtaacaaatcaaaggtatcctgtggtaagctcgtggagtaagtaagatactttgttagggaggtgata aatcgatttatgaagcctatagagtggtttcaaatgcagtatgatacattttttctgttttacgatttcgtccgagtaag agcattcttaacgaccatttaatgaatacataaaagcgcctgccgaacttgagacgattggaaatcgattacaaactttc cattgtttacgcctgacattccgatttcccaaccatcccgacagctctccacgagctaaaaaggtggtgcaaaatcctgg taaaggatatgatcagcagtaacctttttttaatgcaaatgagaaaaaaagcaaagtctgatcaaacagtgaaaggaata cgaattattttgtccagtatttcgaaaggcgcttcctttcttcatcagagtgttgcaacttagacactgttgctggttct cttgttcccaaaaatggcagcaaattaccagcgtttttcaggaactagcgatgaaactcaccattgagtgagaatttatt gatttaacagggtatccagggtacagtcggaccaagagggcgagatggacagcagggagatcaggtcagtggattacgcc gcagataatggcaacttatgaatgtttcagtgtcggttagcgacgtcaagcgacatctttcaatgacatttctctttgag tttgaaaccttgaaggcaaatctttatgattagatcaccagaaagatcatggaagtcaggaaggatatcttcttcctcct tgcttttcaacgtgatacttgtgagctcacgtagtttttttttgtcttttttcttcacacagggactttctggagagcgt ggcgcaatgggaggagatggagccgttggaataagggtaatggctcaagttatcccttgtaatattttatttcaagtcag gccatggtctgagtattgtcaaaacaccccacttctgttcaatattccaggggaatacgggatacagaggaagtagaggc ccacgaggatacaagggaacctctgtgagttattttttaccgtttcattatgcatttatcagatttgtacactggacctt catgaactcgcgcgtccatattccatcgtcctgattttccattcctttttcgaacaccttccatataggctacagttcct tgaaaagggaaatacgtgtaaatggcgtttcgtttttccctttactccatattcgcaataattggattcctgtgattaac gtaatgcttttgcactttgtagggcgcgcaaggcagaccaggctcacagggatctcagggtcctacggcaagtcattttc tggcactgatcacatcatcgacccaatttttctgtgtctttgtagaaactgtgaatgatcctgttgtcatttctatcgca gggtcgtcgcggaaagagtggagctccgggaagaggaggaaagaatggaatgcctgtaaattgaaaaagaagagcacctt tagcttagaaatcgtcctttcttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnagaatacgtgaaaatgggtagtccttatacgcaacagtgttagttaagtgcttcgtaacgattttaaaa atggcataaaaatagctcttgaataatgcactgtttagcgatctgaggtcggatttcacttttcctcttacgtggttttc aatgcatccttatcgtcttacacattcagggccttcaaggaaaaagtggaagtgtgggcattgggggatacactgggcca aaagtgagttcaatcttgcaatttttcttgaaaatcacatcattgaagttaaaaaatgctgatgccttaaaaaatgttgc agggaagtagaggagcaacaggaaaaacaggcgtggcaggagcactgggagcgaaggtaagactgtgacgaaggtaagac cgtgacaaaggtaagaccgtgacaaaggtaagaccgtgacgaaggtaagaccgtgacatagctaagaccttgactaaggt gagaccgtgacggggaaagcttgtgtcgcaaaaatgggacaaagggaggtgcgcgtttgttttgtcatcgctgacatgtc aaatgacaaatgatagttttttttgtaaagaggaattgaaatgcgcgtgatgtgtagtcagttatgattcgatgattttt tacagggaggagttggaccgcaaggagagatcggacaagacggttttgccggtgaaatggtgagttattgtgcatatcag tgttctttgccatttagtgtgacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn |
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Protein
| Protein ID | aug_v2a.02836.t1 |
|---|---|
| Definition | - |
>aug_v2a.02836.t1 DLKGSPGSRGLPGKRGVVGKPGETGQAGEIGFDGEPGSPGIPGLPGRDGTRGERGKQGKQGLPGSKGYQGRQGNSGEMGQ TGPVGQKGLDGPPGLPGPIGDPGSPGFPGRKGPHGFQGEGGSSGPRGKKGQTGNSGHDGVQGGPGSKGREGDGGITGSEG AQGAAGEQGSAGDAGPRGGNGRPGEYGARGKRGKSGDNGKPGRQGVSGIRGLPGETGTKGIQGTVGPRGRDGQQGDQGLS GERGAMGGDGAVGIRGNTGYRGSRGPRGYKGTSGAQGRPGSQGSQGPTGRRGKSGAPGRGGKNGMPRSEVGFHFSSYVVF NASLSSYTFRAFKEKVEVWALGDTLGQKEVEEQQEKQAWQEHWERREELDRKERSDKTVLPVKW* |
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