Gene
Gene Model ID | aug_v2a.04250 |
---|---|
Locus | scaf1554 : 21727 ... 28215 : - |
To GenomeBrowser | scaf1554:21727..28215 |
Genes list of scaffold | scaf1554 |
Manual annotation
Study field | Retrovirus |
---|---|
Gene name | Adi-Retrovirus-related 20-5 |
Description | DNA sequence of this gene model showed similarity with that of Adi-Retrovirus-related 20-1. This gene model contains Rapsyn_N, SHNi-TPR, TPR_4, TPR_1, TPR_2 and DUF2977 domains. |
mRNA evidence |
Annotation by Blast2GO
Annotation | GO |
---|---|
tetratricopeptide repeat protein partial | GO:0072686 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
aug_v2a.04250.t1 | gi|544462764|ref|XP_005567770.1| | PREDICTED: tetratricopeptide repeat protein 28 isoform X4 [Macaca fascicularis] | 0.0 |
aug_v2a.04250.t1 | gi|685568728|ref|XP_003905415.2| | PREDICTED: tetratricopeptide repeat protein 28 isoform X1 [Papio anubis] | 0.0 |
aug_v2a.04250.t1 | gi|585676203|ref|XP_006890581.1| | PREDICTED: tetratricopeptide repeat protein 28-like [Elephantulus edwardii] | 0.0 |
Transcript
Transcript ID | aug_v2a.04250.t1 |
---|---|
Definition | - |
>aug_v2a.04250.t1 gaaggtgggattttcgactcacctctcctccagaaataaataggtcaggccgataaattttcacattcagtacttaacac ctaccaaaattttagcattctttctgttcgtttattcatttgccttaattgttcgtttgttttttttggtggggagaggg atgaccggaagtaaatttttaaatgttgtcgaccaaaaacattgtaagggaaatttgcatattgtcgtgcgaannnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnggtctgctgctaatttggttcatgtggaaagagtactttcggagaaattacg aatatggttgggcttgtttttcttgcttgtcaaaatggctgacaggaaacatagtaaaacgagcattgtcttcttgatta ttaaacccaaaatatattattggctaattttataaactggtatactagctctaccatctgtatgaatttcatttgaattg tctcatgtgcacacgagaaccagactcgtttatttttacttcttgagaatgaatgttttggtcaaagcatcgacgtctgg tcgatgtgatcaagtgtggttaccatggcaacgatatattggccgatccagatatggttgtttttgtttatccccccagg taacctaactccacacaaaaattgaagggggcttaaaatttttcatttccaactttgcttcactttcttggagaattgct cttaatgttgctaagaccgcaaaagcctgcattggcagatgctatctgggctaagcttccttcagatgcaactggaccca aaggtgaagtacaatatgtcctggatggtggtgcactctttcatcggatcccttggcctcgaggattaagcaggattcaa cgtcgacggttgtaaaacacattactcactagcagatgctgatctcctaatagctcagacagctgtggaaagcgcaagaa gggcaaaaactgttctcatgggggacgacactgatctccttattttattgtactattacacagaaatgagcgctgaagaa tcattttttcatcctgagccaagggcaaattcagcaaaacgacgtgtctggaacatgaaagttctgaaggagaagctggg tcaagacatgtgcaacacattttcttcatccatgcaatccttggatgtgatactacttcttgccttcacgaggttggaaa ggggacctctctgaagaaattctgtgggagccatcactctcgcaatcaagctaaagtgttcaacaacgcatctgcatcaa agaaggaagttactgaagctggtgagaaggctctggtttgcctttacaatggtaaatctggcggaaccttggattgtctt agataccgacgatattgccaaaaggtagccacaaacactttccaagttcagccgcagaatttgccacctacttcggccgc agcaatctatcacagtttacgtgtatactttcaggtccaacaatggaagggagtcgatgcaaccatgtcgacggaagaat ggaggtggaaatcctgtgagtgattgttagttcctgtcataacccacctacctccagcacctgaagcaccgcttcacgtt atcaggtgtaactgttccacaaactgcagcagcctcaggtgctcttaacgaaagaacaacctccaaaatgttcacccgct tgcggtcagtgcagagcctcagcttgaagtaactctgtgcaaccagatgaatctgacagcagtagtgaagataacgatca ttcatgatttgtgtattttgctagtaaaattatctgcgttgagatgtcttagagatgactggctttattttaaaagtgcc tccaaggtattgataaagacaatttatgagaagtagataaatacatgctgttttgtatttagcctcgatttcaagctgaa tttaaaagcgttgttctacttagaaaagtatcgattcagacattaaaagctagtgatacagtcttattgaccatttaact ctgacctttgaacattggtgaattgttagccatagacatacacatgaaagtaggttaatgtagacagcctcgctttcatg cggcccatctaaagctatattgtctatcttgtaaaaatattatatcttccccttcttagatttttctagacttttgatat gttgatctgtgtacttcaatgagataaatggcgaagagaaaccttctgttgcaatttgtgatgggtccaaataatatatt gactggactattagtgtattacttaaataagtagagggcaagcaacattcaggcgactgaaggattttctaatgtataga atactaaaaaagaaaagtcagaaaacagaggctgaatctgagtttgctaccattaaagcaaaaaaattgatcgatgttgg aaaaataacattaaaagaaaaaaatctacgacatctattgacagcatttcctttagcaaatgttcatcctgtgatacgca tgtcatttcgtttttctttttttttcttcacgaattaattattcatgtacttgttatttttttgttaaaagaaatggata agcaacagagaagtggaagagtctgtatcaaacacagtatagatttccagttaatgggtgacagtaaaaaagccattgat taccttaaaacacagttgacgactgcaatagaagatggtgatcgggaacgagaaggaggagcctatagaagtctcggtaa agcgtaccagttaatgggtgactatcgacaagccattgggtatcatgaaaaacatttaaaaattgcagttgaaactggtg atcggggggaagaagtaggagcctataaaagtcttggtaatgcttacgactcattgggtgactatcgaaaagccattgag tatcatgaaaaagatttgaaaattgcaacagaaattggtgatcgggacggagaaggaggagcctatggaaatcttggtaa tgcttaccagtccctcggtgactatcaaaaagccattgagtatcaagaaaaacttttaaaaattgcaatagaaattggtg atcgggacgaagaaggaggagcctatgaaagtcttggtaatgcttaccagtcactgagtgactatcgaaaagccattgag tatcatgaaaaacatttgaaacttgcaatagaaattggtgatcggggcagagaagcaaaagcctatagaaatcttggtaa tgcttacttcttacagagcaactctcgaaaagccattgagtgtcatgaaaaacatttgaaaattgcaatagaaattggtg atcggggcggagaaggaagagcctatggaaatgtcggtaatgcttaccacttactgtgcgataatcgaaaagccattgag tatcacaaaaacacttgacaactgcaacagaaattggtgatcgggacggagaaggaagagcctatggaaatctcgggaat gcttaccaggcactcggtgactatcgaaaatccattgagtgtcatgaaaaacatttgaaaattggaatagaaattggtga tcggggcggagaaggaagagcctatggcagtctcgggattgtttcccagtcacttggtgactatcgaaaagccattgagt atcatgaaaaacatttgaaaattgcaatagaaattggtgatcggcgaggagaaggagcagcctacggaggtctcggtaat gcttaccagtctctcggtgactatggaaaagccattgagtatgtcgaaaaatttttgaaaattgacattgaaattgttga tcgggtaggagaagcaacagcaactggatatctcggtaatatttacagcttgcagggtgattatccaaaagccattgagt atcacgaaaaacacttaaaaattgcaacagaaattggtgatcagaacggagaaagagcagcctattcaggtctcggtaat gattaccactcactcggtgactatcgaaaagccactgagtatcaaggaaaatgtttaaaaattacaatagacattggtga tcgggcgggagaaggaagaacatatggaaatctcggtaatgcttaccagaatctgggtgactataaaaaagccattgcgt atcatgaaaaagatttgaaaattgcaatagaaattggtgatctgagcgaagaaggaagagcctatggaaatctcggtagt gcttacctgtcacttggtgactatcaaaaagccattgactatcaagaaaaatgttcgaaaatcgcaatagagattggtga tcggaacggagaaggaagaacgtatggaaatctcggtaatgcttacaatttactcggtgactatcgaaaagccctggagt ataaagaaaaatttttgaaaattgcaacagaagttggtgatcgggacggagaaggagcagcctatggatttctcggtgag gcttaccagtcactcggtgactatcgaaaagccattgagtatcatgaaaaacatttgaaaattgcaatagagattggtaa tcgggaaggagaaggagtagcttatcacggaattggagtacaattcttatttcttgaacaaactgaaaacgcgatagata attttgttgccgccgtgggggccttcaattctttaagatctctattgaagtctgaagataattggaaaatagactttcgc gaggtgtacgaaaggacgtacactgctttatggaagtccttgctaagaatcgaaaagatagaagaagctttgtttgcagc tgaacaaggacgagcgcagactttgtctgataatttgttgattcaatataaactcaatgcgtccttatcatctgccataa ttgacaccaaagacatgatatctcgcctcttcacaaagctttccttaccaattctttttctagcaattgaagagtttacg accaacatctggtttctgagaaagggaaagaaagttagatttaggacagggaggctggatggtgacagaagagagaaaga tcctttacacgccttactgcaatcatctttagaaaaaatcggagctgaagatacaagaagttgtgaagatcgcacatttg atgaacttgacaacgaatgctcgtttagcatagaagtggggggtgaaggagttggaaaaccaccattgccgcctttagat aatccctttaagccattttatgatgcagttattgatccaattgctgacatgcttgaacctcaagacgaggagttggtcat tgtttctcatggtacgctgtgctttgtcccatgggccgcagttattgaatccatgaggattcgcattgttccttcactta caagttatcaattgatcttaagtgtacccgaaggacatcacaagaagaaaggggcacttttggtcggaaatccctgccta aaggagttgaagaaacccttagatgacttaccatgtgctcaagaggaagtggaaatgattgcatcaattctgaacacgat acctcttgtcgggagaaaggcaacaaaagctgaggtgatgaaacagatgtcgtcagttggactaattcatattgctgccc acggaaacgagcgcactggggaaattgctttgtctccaaaccctgggtggtcttcaaaattccctcaaagaaaggattac attttaaaaatgtccgatgtgcaggctgccaatcttcgagctcgtcttgtggtgctaagttgttgtcacagtggacgagg cagagtcttgaagggtgagggtgtggtcggtatcgcgcgtgcctttttggcagccggtgctcgttctgtgttggtgtccc tatgggcaatagatgacaaagctaccatggtgttcatggaaagtttctaccgacacctaaaggaaggaaaaaccgccagt gctgctgttcagcaatcgatgaaattccttcgatctgaagatttttctgagatgagatactgggctccattccaacttat tggggatgacgtcaagattgaactcgaagcggatgatgccgtcaaaagatgagattaataagcttttttccattcctttg tcagcataaccggcgtaatacgtttccctggctgttttacttttcggtaatgccacgtagcagatcagttgcgacaatgt gcagtggtt |
Protein
Protein ID | aug_v2a.04250.t1 |
---|---|
Definition | - |
>aug_v2a.04250.t1 MDKQQRSGRVCIKHSIDFQLMGDSKKAIDYLKTQLTTAIEDGDREREGGAYRSLGKAYQLMGDYRQAIGYHEKHLKIAVE TGDRGEEVGAYKSLGNAYDSLGDYRKAIEYHEKDLKIATEIGDRDGEGGAYGNLGNAYQSLGDYQKAIEYQEKLLKIAIE IGDRDEEGGAYESLGNAYQSLSDYRKAIEYHEKHLKLAIEIGDRGREAKAYRNLGNAYFLQSNSRKAIECHEKHLKIAIE IGDRGGEGRAYGNVEIGDRDGEGRAYGNLGNAYQALGDYRKSIECHEKHLKIGIEIGDRGGEGRAYGSLGIVSQSLGDYR KAIEYHEKHLKIAIEIGDRRGEGAAYGGLGNAYQSLGDYGKAIEYVEKFLKIDIEIVDRVGEATATGYLGNIYSLQGDYP KAIEYHEKHLKIATEIGDQNGERAAYSGLGNDYHSLGDYRKATEYQGKCLKITIDIGDRAGEGRTYGNLGNAYQNLGDYK KAIAYHEKDLKIAIEIGDLSEEGRAYGNLGSAYLSLGDYQKAIDYQEKCSKIAIEIGDRNGEGRTYGNLGNAYNLLGDYR KALEYKEKFLKIATEVGDRDGEGAAYGFLGEAYQSLGDYRKAIEYHEKHLKIAIEIGNREGEGVAYHGIGVQFLFLEQTE NAIDNFVAAVGAFNSLRSLLKSEDNWKIDFREVYERTYTALWKSLLRIEKIEEALFAAEQGRAQTLSDNLLIQYKLNASL SSAIIDTKDMISRLFTKLSLPILFLAIEEFTTNIWFLRKGKKVRFRTGRLDGDRREKDPLHALLQSSLEKIGAEDTRSCE DRTFDELDNECSFSIEVGGEGVGKPPLPPLDNPFKPFYDAVIDPIADMLEPQDEELVIVSHGTLCFVPWAAVIESMRIRI VPSLTSYQLILSVPEGHHKKKGALLVGNPCLKELKKPLDDLPCAQEEVEMIASILNTIPLVGRKATKAEVMKQMSSVGLI HIAAHGNERTGEIALSPNPGWSSKFPQRKDYILKMSDVQAANLRARLVVLSCCHSGRGRVLKGEGVVGIARAFLAAGARS VLVSLWAIDDKATMVFMESFYRHLKEGKTASAAVQQSMKFLRSEDFSEMRYWAPFQLIGDDVKIELEADDAVKR* |