Gene
Gene Model ID | aug_v2a.05237 |
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Locus | scaf1930 : 19776 ... 31649 : + |
To GenomeBrowser | scaf1930:19776..31649 |
Genes list of scaffold | scaf1930 |
Manual annotation
Study field | Retrovirus |
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Gene name | Adi-Retrovirus-related 54-4 |
Description | DNA sequence of this gene model showed similarity with that of Adi-Retrovirus-related 54-1. This gene model contains fn3 domains. |
mRNA evidence |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
aug_v2a.05237.t1 | gi|573883715|ref|XP_006630012.1| | PREDICTED: receptor-type tyrosine-protein phosphatase delta-like [Lepisosteus oculatus] | 9.0e-21 |
aug_v2a.05237.t1 | gi|597735968|ref|XP_007230252.1| | PREDICTED: receptor-type tyrosine-protein phosphatase delta isoform X10 [Astyanax mexicanus] | 2.0e-20 |
aug_v2a.05237.t1 | gi|597735958|ref|XP_007230247.1| | PREDICTED: receptor-type tyrosine-protein phosphatase delta isoform X5 [Astyanax mexicanus] | 2.0e-20 |
aug_v2a.05237.t1 | gi|597735954|ref|XP_007230245.1| | PREDICTED: receptor-type tyrosine-protein phosphatase delta isoform X3 [Astyanax mexicanus] | 2.0e-20 |
aug_v2a.05237.t1 | gi|597735960|ref|XP_007230248.1| | PREDICTED: receptor-type tyrosine-protein phosphatase delta isoform X6 [Astyanax mexicanus] | 2.0e-20 |
Transcript
Transcript ID | aug_v2a.05237.t1 |
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Definition | - |
>aug_v2a.05237.t1 gaataattcccacgcagataagaaaggggtgagttacctgagagtgaagaagtactaagccataaactgttatcccagga aatgcttggaaaatgggaactctcattgtcatctacgatgaaataatgacactatcatagagaaatcgtatcatttttta tctacttttagatattcacagggaacagccagcgccaagagattgtgaaaaatgatctttacaatccacttgctgtaaaa ttcattcgtttctaccctgtgtccttcaaccggaacaaagcattaagagttgaagtttttggatccaagcaaagtaaatt cttctgttttgtgtgaacaaaatgtaattcattgtaaaatcatgggtggaatcattaattattattgtaggaatctttta gagatgtccatcnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgtataatgataattatttggaatttatttgccttgacc tttgagagactcacaaggcaagaaagacaatatataaataatgatggttaattgcagcaacccttgttaccatttttttc atttctattcctttgttatttgtcaacaaaggtcttatctttttattgtgcacaacagacaccaagatttggagtcaatt tattatgactacttttgctacaatatgacaaattacttttatgcaaaggtataagtgctcttgcagagaaacagttgaaa gctgtgtttttggtttgtgattctcaggctgcttgtcatcagttggcaatgaagaaggtgttctgtcacagctattttca gttacaggatcatctcaacttgatagtagtcacaggccagatgacagttttttatatggtccttcatcatggtgtagtaa ctcaactgcttcctctcctcacttacagtttgattttgggaaagtggttacagttagtggcatagcaactcagggagatg ctgtagacaacaaatgggtaacagagtatgctgtcagatatggatatgatgagcagtcttggttagactatgatggggga caggtaaagtgtcatataaaggacagtttaagcaaattgtatgtaaatttaagtttaattggtcagtggagtgacttgga agatatttaaggtgtcattttcttcatatgattaatattattaaagtgtgtataccttaaaatttttatttcatttttgt tagttacattattatgtgtatactgtataatgagtctaagcagtttgacaattaaaaatccttgaaaataagtctgtgag ttttgacttaaagaagttccattttaaggtgaaattgacatgttttgagcatgagaaaacaatccattagttttattaca catgccaagccagcaaaaaacaaaatggaaatcttaagtcatatattaaacaacctgtaatatacagagtgtaatcccca tggttttggggaacgcaccttgttgcatcttgcatctttgttgtcatgcttaagaaatatggaacagaaagggctgcagt agacaatttcatccggggacaacaacgcaaactacgggagcagttaaaaaaaaacagcggctgcagcagctaagtctgcc ctggcnnnnnnnnnnnnnnnnnnnnnnnnnnngtttattcctagctccagttcctgtttttcatgtcatgaactgataaa tttgactgtgtattcttagtgataagtttgactacaggtgtattctaagtgatgtgattgttagaaagtgcatggacatc tcagtttgtaactaaaagcttgttgaccaaaatatatgcaaataggacatcaatcattaagtttcagtgtctttgaatcc tgcacttacatttgttacacctaagttgtattattttccttactcataaatatgtgttgtccgcaactgagctcgcgttg tgggtggctcctcctgaaatgttctgcaattggtataggatttaatggagccgaaaccaattgtagaattgcacacattt taggcatcctactgatgaacagttgcaacacagatagatttttagcaactactatcatttgcagtctgtccactttgaat tgtgaaaacgaaaatggctctgttgtgtcggtcttgtgtaaaatttgattccagatcgactattaatatgagttcacaga atcactcaaaagatctaataagctgggaggtgcatctttactgtatttttcatgcatgaggagaaacatagattttaaat aacgcatttcaactggaagacttttggaacacaagaacaagggaaatggcatgttcttttttattatggaattaaattag atgtagaacatttttttggagtattaaaatttgtttcaagatttgatgttaaggtttggccccatcctgagaggtcataa gaggtgaacagattaaggagcaatagatattaagaagaatatttgtagggagaaaatgttgtagatgtgaaacaatgcca acagttttgctcatttttagggtaatgtagtcttcatgatttttccaggagatattgttgtcaatgcagtacccaaggtt cttatcaaagtttttgcattcagggtatttaaacaggttgtgctcttaatacaatattttaagattaaagttggatgcaa cctttcttttgtgggagtgaaatatcacagaattcaattttttggatatttaaggtcagctttttacaaccagtcacaga tcttagctaaattcattgttaacagtgatctctaggtaattttttaaccttttgtcagaaaaaagtagattagtgtcatg agcaaatgtaatcaatttcagttttttgaatgaggcgttaatatcgacattgacatataagagaaataagggaatcacag ttagttttaaattcctataccacatttgttaaattaagagtgatggagtctgtgcaatggagttgtgattaagaatatag aaatccttgttgcatgaaagttatttattgcctcaaaactcactgaagatctctgcaagaaagaaaagtaatttgtgatg cgggattttgagagtttgaaattatgaaaagaagtgtcatgggtatggttacttttgtgctttgtttgactgaaaacaaa ttagcagaatttttattttgttttgtttcatttctcagcatctctctggaaacagtgacaaaagttctgttgttgttcgt gtgttctcctccccatttgcagcaaagtttgtcagaattattccaaagatctaccataccgcacagtgtatgagggtgga cctatttggttgtaaagattgtaagtgcagtatattaattttgttatataaggcttgtaataatatttaaagatgtctaa taattctttaataattatttgtttctgagtggaaataactacaaagtttacatgtaatttatgtctttttctgttctcct ttttgagaagagacttatactctgggacttatcctacatctatttcaatacttttccactaattaatttcgttaaagctg taaatttttcgcttttattttttaacttgttactctctgaaatggtattattgattacagaagaacttcactaaataata ttatttgaggtttgtggggttgtgaatattatcaggatattgttgttgactagctgaagaagattatgtactgtaatgat gaataagtatttatcctttggctgattatattacaataactactattttgtggaatatccgggttaatcgtaattgatca gtaaaagtaaaaaatgatgtggctattcaataataattaatgtttaaaagactgcaagtgcttaaaatttgtctatacag tgtatattgaatttaaatttataaggaggacctgtttaacaacagcttaaagtatatttgtagctgtcaaacatcattct tatagaaaatttggtttaatcaaaggagttgataaaggtaagattaccactgtgaaagatttggaaagctgacgtttcaa gcgttagcccttcgtctttactctgatgaagggctaatgcttgaaacttcagcttttcaaatctttgatggtggtaattc tacctttatcaactcgtttgataaaaccaaattttcatgtttcactttcccaatggtgcagtaccacagtttatctagaa actagaaattcgtagcattcttattgatctttaggtaaatcacaaaatttagttcatgtggtgaaaaggttctacactgt ggcaagagtaaaagatgtagatgttatattcaagtcaagtttttaactacatttgaaaggataaacaagtcacacaggta ctgtggcaacatcattaactttaaagttaacgtggcaagatcatggtgatttgagagactttttgtagctgttatttgaa actctgcttcacttttttgaagttatatgtctcatgtttagttttgtttatttatttggctttgccagtttaatttctgg cagggataccataacagcgtgagccaattactgtggtcctgtaataaaccaccccctcccccccgtgaaagatgaaggct agccacaacaccaagatctcggtgccctactcctttcaaacagtgtgtgggtgtttttacatcacacactgcaggattgt gagagggagcctacagtttatcatccttatcaaagaatgctagaaagtccaaccatttgcagatgtaattacaaaggcag cactttctactcagttattttaagaccctgagtgttggtctggccagggttccaaccccttacctcctgcattgcagtcc aatactcaaccaaattatccaaatgggcagtggttaagagttatcgcctgtatgtcctgtagtccagattcctcagaaat atctaaccaaccaacattgcttattcattgtaaaatccactttttactagtcagtgtctggatagctatggaaccattag tcgtgagtaaattttggttcatgtttgtacacaagtcaaaatttattcaaagttattctccacacggaattaatgaatgc ctcttgatcattccactaatttattcacaaattgatgtgaccatatttccaccaatggcaaagctcctctacactcgtat aaaccacaacaccccacaattcctctaatcgttctgacaaagggctaacgctctaaacgtcagctttctaaatctttcat ggtggtaattcaacctctatcaactaggttgataaaaccaaatttttgttttcatctcttcagcttcactgctgaaaaga aaggaagaacatacagctctttacttcttagctgaactttgtcagtccagaaaatggaaaatttctgcatacactcttaa agctgaggtaaggttaagtaggaactgagtttcatcaagttaggaaggatttgctgtgttattgttatcactattgccat aaattgtgaaaacgttttctgcaggaaggttagatgtgttttccatggggaatccatctttgacattttaacaagtgtta cataaagatggttgcactaactagataattataagcaaaggagataaaacatttacaatgaataagcattgtttgtttgt taggttgtcatttaaagcttacattatttcccttttgttatttttttcagttcaagttgcatttcttcatgtgaatgtta ataatgccaccttggcagctgtacacagtgcatctgttatgctcaactgcattatcaagtcaagcaaacaaaggcctcat gttatggaatggaggaaagatggagttaaattggctgatgagtcaagttcattgctaacagtaacttacagcaatgcaag tgacaccagcagcaagtatcattgtgtatctgtatcatcaagccgtgacgtccagtgcactgcagtctaccaatgttcag cttcacttactacagttgctggtttgcctgaaattaaagatcaaggaaattctactgtcactgtcattttaagtaagaca annnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgcatttttttttggcatttgagatagatgga aatcatttcatttttggcagcaaattgccagctgcctacagatttcgagctggctgtgtgacaaagaatgcccatgtatt ccacggcttgtctattctgcagtggagaaaacatggagaatctatccagtccatccttaaaagggatgttgggtagttaa tgtcttagttgctaggagtaaatgtttcaacaggttgtgagttgttcttcaaataattttgttgggctgcttgcgtattg gtttatgtgttcttctgttatgttattcagagaagccgaggcaggtaactggtgtttctacaagtatggtgacagcaaga acagcgttagtgacatggacaagttactcccctggagatgatgaagccccaaccagcattattgtacgatatgaaaacag tacccctccctaccatttggccattctaccaggaagttcatccaggaaagagttaacaaatctcaaacctttttcaaagt acaatgtcacagtcaaggagtccagtgtcttgggtgatggtttatggagtactactgtgacctttgtaacactgactgca agtaagtttactatccagccttaaatcataaaattcacgacctatccaaactagtgagtcccattcttcagctacgttgc atccaggtatttttaaggatgtaggaggggggtttataatctgtgtcatattcccctcgccctcgccctcgccctcacgt gtctcgtcaacatgcataatctattctaataagttatgcataaaacattgcattaattaactctaattaaatgtttgctc tgtttggcaactacgtatggcttgcagttgttccaagtagttccagttgcattaaattttgagggatattcttgttgggt gcaaattccagaaattcattctctcaacttcaatgagttattattcatgaacagattccaagcagatcaaaaaaaaggca gatctatatagacgattattttcaatacattaagttcatgtctgtgaactgcgggttgaaatgaatttctagcgtatgat ccttgtagttcttagcactacttaggtcaagttgtggcaagaaaggcctgaaaaattcaaacctgaacggggactcaaac cactacctctgcaatgttggtgcagcgctctaacaatttagctgtaaggccaagtggaagcttgcattagaactccagat taaaatgaaggtgaatgatcctcgtagtttttagtgctacttagttaaacagttgctagtatgactataaaaattcaggc ctgaactgggactcgaaccgtgacctctgcgatgccggttcagttctctcccaattgggctatcagatcaaataattaat tattccggtttcctgtggtgccaagggtagctttgcagatttaatggcacactctgagcttatcccagattcttttgcat gaagcaactgaggaaattgcagggtgtccccctgcaccatattgccagtgcctattttccttattgagcggaaagaaaag tatttgcttttctctttcagagccaagtactgctccttctaacatcgcctcgcagcaattgaacgaaactagttatagaa taagctggaatcctttgacgatagaaacgagcaatggtgtagtgttagcctatgaagtgaagtatacgagggtctactac agagggtccctatcttcatctgctccacgctatcaaaacacaacagacacgatggtcacgcttcaaaggttgacattatg ttctacttacaatgtccttgtgcgtgcatatacttcagctggtgcaggacctttcagtcatgcgataaaaattactgcta ctggtaggtctagtaatgatcatgtttattacacctgtgaaaaatcattttagagggtatactagcgtgcacgtgcgtgt cagtgggaggcacaaacggagcaacatagatttactttcgatgacgtcacgacaaccaaaccaaaccaccaaccaggctg cttggtagtgaagaacatcttctcttcagagggagaaggagtgctggccagctggagaagaagttgagcgaagaaaaatt catggcagtacctttgcatgcatttgttgtattcttcttgttgttcttgtggatacagtgtattttttgatgcaccggtt tgctaccaacactgcgtggcagaaatacgagcctagttatgtatttatgttgtaaaaaaatgaggtccaaaaaaaagaaa cgggtagaaaatatacattgtattgtggcgtgaccaaagtcacgctttgaatccgccctgtaattcatttgcagcccctg ctctaccccgtgatgtcaaggctggtactccaagtaaaagaagcgttacattatcctggaaaaagcctctaagctacgga gacgatgtacaaatgtacacggtaatttatttactttttttatttgttccaacattggtggatacatgggagaaccaatc tcgttttgctaaagtcgggcgcgcaagtagtatccgtattgttgcaaacaacttcttgcgcgcctgttttactgcgcttt gtgctgttaataatctcaaatcctgattggtaattatgatttgagattaactaacttcatcacaaactttgctctaccgt cttgcatatcttcttctcccgggcaagtagatttaacgaaacttactgacagtcataaatagtgagttgacatttggacc acttaatggacactaagtggtgtatgttagattttagcgctcaagttgataccccgccaaagttatgttatattgggcca caaacttttgctttacactcgttttcaggttaggtacgagagtgcaaagagttattatcctgagttcaaacatacaaatt cagtgcaaaccgtgacattgagtcaggaaattacagatctctatcctgacacaacgtacacctttgttgtggctgccacg acgcactgtggaaaggtttataacagctctgtggtaaccattcggacggttatcgatggtaagttataatttcatgctga gctgtttgaaatcactgtgctgtaataagaaccactgacttaacaaataaggcactacaagaaggaagtactccttttag aatgttctttcctcagattttttttattcgttttcgtgtgtgtgtttttaaagtatcttttaaacatagcataaggaaaa gaaatacagattttgcagctacgtcaagtcaaaatgatttcaattcgttttttttttcattttccgtgtcttttatctgg aaaggtgaataacttggatacaagatgatgtggagaatcaaacttggtcacattgatttgtgtgttaaacttctatttgg cgctgtaaaagtcgagatgagctcaaatacagctctttttgnnnnnnnnnnnnnnnnnnnnnnngtttgttcaataaaca ccaacaaagattgcgtatccatttgtaacggttgccattaaacaattgcagttaactagaagaaaacgtttgtgagcctt caaacataatggtctttgaagatgacatttatggagctttgtttttgtccacagctccatctgcaccaggaaacccagga ggaccccaacagattgaaacgggaaggtcatcaacaaatctgacaatttggcctgcagcacaaaacaatggtcccatcag gttggtgttcttttacgctcgcacataaagaagaaaaattatgattaagagaaagtgaagctgtttgtgaagtgagatta ttgcagagtagtaatcagcgcatatctgctgattactactcgatcagtatcacaaactatgaagtgaaacaataagaact caaattaatcttgctggtcattgcttgagttgattttaattctttgattttcagaaaccggcttgagatgttattgtcca atcatgtcaggtactgtagccttaaacaccaattatttgtgataaacaagctttttaatccatgtgttcttttttattct ttcagattttaccaaattttggtgcatcgagttcaggattggactgacacagtcactgattggaatgattttggatctaa tttctacatctcggctcaaatttttgcaagtgatgtaaaaactaaaatgatatttttactcggtgatggagaaaataaag gcggttacaataacaaagagttgtcaagcgtccagaagtacaagatttattccagggcactaactgagtttacgtccaag gtagatattatttcaattgaatggttgcgggaattaaaaacgaaacatctggaaaaagttacatttccgaattttattca tgcatgtaccgccactgttgttgacttgtagagttggtgggaggattctaaagaaatcctgttttcgatgttagttgttt gaagtgctgtgtaggagataaatcagtatccagtagataacgccatcggttttatactggtctttaactactggattgtc atcaatccagtggatagagatattaatctttgtaaactaccgtagccagagcacagaatgtcaacgcaccacagctatat tctgtgatcagactaactttgcttttatttgatagaatcgttccactgatgagagatttcttattggcccagcgcaactt ttagcccagattgaggtagaagcaggtaagacaacatttcaagtacgttttcttcttccgtacgtctgcgttgcatttag ttgcctttttggagttaatgactcgagtgaaactaattgcaacttttttaatgtatgaaacaagttattgcgatagtcac aagtgaaagccaatagatggatattcctatatcctctgtccagtaaagatcgccaagctgtaactcctcctccttttcca ggcacaaccaagaaaagaaacatgaaaatctctg |
Protein
Protein ID | aug_v2a.05237.t1 |
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Definition | - |
>aug_v2a.05237.t1 MLNCIIKSSKQRPHVMEWRKDGVKLADESSSLLTVTYSNASDTSSKYHCVSVSSSRDVQCTAVYQCSASLTTVAGLPEIK DQGNSTVTVILKKPRQVTGVSTSMVTARTALVTWTSYSPGDDEAPTSIIVRYENSTPPYHLAILPGSSSRKELTNLKPFS KYNVTVKESSVLGDGLWSTTVTFVTLTAKPSTAPSNIASQQLNETSYRISWNPLTIETSNGVVLAYEVKYTRVYYRGSLS SSAPRYQNTTDTMVTLQRLTLCSTYNVLVRAYTSAGAGPFSHAIKITATAPALPRDVKAGTPSKRSVTLSWKKPLSYGDD VQMYTVRYESAKSYYPEFKHTNSVQTVTLSQEITDLYPDTTYTFVVAATTHCGKVYNSSVVTIRTVIDAPSAPGNPGGPQ QIETGRSSTNLTIWPAAQNNGPIRNRLEMLLSNHVRFYQILVHRVQDWTDTVTDWNDFGSNFYISAQIFASDGTN* |