Gene
Gene Model ID | aug_v2a.08808 |
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Locus | scaf3365 : 17666 ... 20337 : + |
To GenomeBrowser | scaf3365:17666..20337 |
Genes list of scaffold | scaf3365 |
Manual annotation
Study field | Flagellum |
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Gene name | Adi-Trp7 |
Description | Named thus because a bi-directional best hit result was obtained by BLASTP searches. See Mus musculus short transient receptor channel 1 (NP_035773). |
mRNA evidence |
Annotation by Blast2GO
Annotation | GO |
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short transient receptor potential channel 6 isoform x2 | GO:0005261 GO:0006811 GO:0016020 GO:0044464 GO:0044763 GO:0065007 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
aug_v2a.08808.t1 | gi|589942249|ref|XP_006983839.1| | PREDICTED: short transient receptor potential channel 6 isoform X2 [Peromyscus maniculatus bairdii] | 8.0e-39 |
aug_v2a.08808.t1 | gi|532006012|ref|XP_005346847.1| | PREDICTED: short transient receptor potential channel 6 isoform X2 [Microtus ochrogaster] | 4.0e-38 |
aug_v2a.08808.t1 | gi|9967888|emb|CAC06427.1| | TRPC6 cation channel, putative alternative splice variant gpTRPC6c [Cavia porcellus] | 7.0e-38 |
aug_v2a.08808.t1 | gi|514466248|ref|XP_005004938.1| | PREDICTED: short transient receptor potential channel 6 isoform X1 [Cavia porcellus] | 7.0e-38 |
Transcript
Transcript ID | aug_v2a.08808.t1 |
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Definition | - |
>aug_v2a.08808.t1 caagcaaagcccaccggacagcggcatccatcgaaatgccaaatgaaaagttggcatctactgtgcaacacttaaataca taccgtggcctcgctagtccagtatacattgcggcatcttttcttgaaaacttggagaatggtccagatccagtttaccg cgtatgcgtcttgaacaaagagctttgcgacgaggccaagcaggaatacgaattcagcacagaatacaaaaaactgagcc ataattgcaagaaatttgctgtagcactgttgaataaatgccgtacgttggaagagattagatgtattatggaaacaaac acagaacaagccacatctcttctcaaggaaggacggtttaatatgttggaatttgccatgaagactgataaacataaggt tagtgtcagtgatgtgttaatttactattcaaagagttttccctttggcttacgggtttttttacactgatcaaacatgc catagggctgtactgtgtatcatgggccggccttattggaaaaataactaccagttccaggctcacgcgaccggtactat aaaatgttttggggaatcagtcatttatctagttaatcagagttagttaatcctcagagtaatttacttgagcacaactg ctctacttaattttgagttccgcattactacgtaattcttctttcctcttaaattattctttgtacaagtctagatattt ttattgcaaggaaattttatctttcagcttgtgagtcacccatacagtcagttattattgaacgcagaagtttacaaggg tgccactttcctggagaagagcacttggaaacaagttctggttatactcctgtcggccactttgtatcctgtgttcttca tggtttggcccatctctgaaagctgttttcctaatcataaagttacgacaatatttcacgctcctattgtaaaattcttg atcagttgtggagtctaccaaacatttatctttttgctggtcatttcggccgcttccaaggacttaagccgtaacctcat atgtggtaagtggaaagtttcctcttaaatctttgttgttcggccctgacaaagtcttgctttaattgcttgaagagggc gagtattattcttcggattggttattcttgatccctgactcattggccgttatggctcctgtgtaagactgaaaatagct cggtgagcgaatttgcaaagagaccatcacacggaagttgcctaacattcctagttgtgagctcgtgatatcaggttgtt tacgcttacagcaggattaaaagcaacattcgggtattgatcatgggtacttgtttgcatataatccatcaactgactgc atgtcttgtttgtatttatgcttggaccatgagtttgagccagttcccaggcaacaattattgttctgaatctctttata cagaatcttttattctcttgttcgtcattggactagcagttgggctcatcaaagacttgtgccaatttggaacacagcgc ttcttttccaacgctaccaacttcattgctgtcgcaacagttacctttttcatttcctattacgtcatctggtgggtttt tgcaggagaccttccgatggacgacctcgaaacaaggcaagaattcgcgaaacctcctttccctagcggcctgttacttt ttcaaagcgttctttctgtcggcgtactcttggcttttttctacaatctctccttcatgcaagccaatcctagcattggt ccactgttaactgccttcatagagatgttgattgatgtggcaaagttctttttttatttctctttcatgtttttggcttt cactgtgagcttcaccaagcttaatatgcagtacttcacagtaaaaggatacttcgaatcaatacagaaccaaggcaact caaccattgacaacgatgctcttatgaagtaaggataaatacaggcgacgatgaatgccgactccttctccgttccttga cgcattttacatctaacgaaaagcgagatttttgggaaaattatattcctcgctcccaggggtgacaagtccttcacacg aactcgtgttcatccatagagtcttcgtagttacggtgtttatcgaatttccttgcaattaattgtctgtcaatgtatta cctaagacttactcaggtcaataattcgttctcttgtccaattagcttagggaatttttacggggatactctcgcttaca tctcgcctttctcctccccacttctcttccttgaacaggcttacgggaagacaacggactcttgaggtggactgaaaagt aattaactgatttctcttcaattaataaaatttcatgaatattaatttttttccagcataggagaaggtttttgggtgac tttctgggcgctgtttggtcaaattgacatagactacttcctcatcaacgacacgcgttttcaatcactcagcattgtgg ggatgataatattcggagtatttaacgtggcagctgttcttgtggcacttaatatgctcattgcaatcctcaacgaatct tacacaagaatatcggtgagttacttttgtcaagttacataccatggtggacaacctccataattgttgcgtagtatgcg gcgttgttagttattaaataaatgggaaattg |
Protein
Protein ID | aug_v2a.08808.t1 |
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Definition | - |
>aug_v2a.08808.t1 MPNEKLASTVQHLNTYRGLASPVYIAASFLENLENGPDPVYRVCVLNKELCDEAKQEYEFSTEYKKLSHNCKKFAVALLN KCRTLEEIRCIMETNTEQATSLLKEGRFNMLEFAMKTDKHKLVSHPYSQLLLNAEVYKGATFLEKSTWKQVLVILLSATL YPVFFMVWPISESCFPNHKVTTIFHAPIVKFLISCGVYQTFIFLLVISAASKDLSRNLICAVGLIKDLCQFGTQRFFSNA TNFIAVATVTFFISYYVIWWVFAGDLPMDDLETRQEFAKPPFPSGLLLFQSVLSVGVLLAFFYNLSFMQANPSIGPLLTA FIEMLIDVAKFFFYFSFMFLAFTVSFTKLNMQYFTVKGYFESIQNQGNSTIDNDALMNIGEGFWVTFWALFGQIDIDYFL INDTRFQSLSIVGMIIFGVFNVAAVLVALNMLIAILNESYTRISVSYFCQVTYHGGQPP* |