Gene
Gene Model ID | aug_v2a.10004 |
---|---|
Locus | scaf3826 : 18176 ... 26000 : + |
To GenomeBrowser | scaf3826:18176..26000 |
Genes list of scaffold | scaf3826 |
Manual annotation
Annotation by Blast2GO
Annotation | GO |
---|---|
collagen alpha-1 chain isoform x2 | GO:0001503 GO:0005585 GO:0005788 GO:0007411 GO:0007601 GO:0007605 GO:0022617 GO:0030020 GO:0030199 GO:0030574 GO:0035108 GO:0042802 GO:0048407 GO:0048839 GO:0050789 GO:0051216 GO:0051716 GO:0060272 GO:0060350 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
aug_v2a.10004.t1 | gi|2190238|dbj|BAA20408.1| | type II Collagen [Oryctolagus cuniculus] | 2.0e-19 |
aug_v2a.10004.t1 | gi|13938253|gb|AAH07252.1| | COL2A1 protein [Homo sapiens] | 1.0e-18 |
aug_v2a.10004.t1 | gi|742141665|ref|XP_010879003.1| | PREDICTED: collagen alpha-1(II) chain [Esox lucius] | 1.0e-18 |
aug_v2a.10004.t1 | gi|30097|emb|CAA29604.1| | pro-alpha 1 (II) collagen (313 AA; AA 975-271c) [Homo sapiens] | 2.0e-18 |
aug_v2a.10004.t1 | gi|825645|emb|CAA26223.1| | pro alpha 1(II) collagen [Homo sapiens] | 2.0e-18 |
Transcript
Transcript ID | aug_v2a.10004.t1 |
---|---|
Definition | - |
>aug_v2a.10004.t1 ggctccggatctgcaggtccttttgggatacaaggaggtcccggacctgaggtaattatggataaggacttttcataagc gatcgctcgaaaggtctgtttgaggaacgagcgtggaaagagaggagtaatacccgtttttctcgctcgtacgcacacac gtgtaatctcgcgttttcttttctctagcgcctataactgtgaagcattagcttgttttaggctgacctttcttagacaa gaattctcttgactgctgtcgcacctgaggaggaaattggtgctacatgtcacgcaatatcgttttcgtgacatttattg tgtgcgacagaggaacccgattgttcacaggatatccacctgcacccaacaagttgtcgtttttttccgttcaaattgtc attaaggatcagtgatgtcaagtgacaatgctttgttttcttcagggagcaaaaggacttcggggtgacactggaagaca ggttagaatagtttcttattaactacttattaaatgggtcgcgtcatgcgaaaagggcccgcaggacatatattttgtcc atttttagtctttttttgcccacttcattctccaaataacatgatggaggtgataaaagtcgggaaataacaattgaaac cgtaaaaatcgctctttgaatgagaaccctatattactgccgccatttttaggagatgacttcgaatgcaaattactcga aatcacgtgtcatgtcgtccgggcccttttcgcatgatgcggcccaaatgtcgggaaaaacactcgtcatgttgcgcatc aatttgctcgaaaactattacatttggcatcgaaaacgccacttaacagtttattattgcattattttagctatttaata gttatccagtctccttcatattccacaatgtgggcgaaatatccaattgtaggactggtaggaacattctgagaacagag gaattattccaaacgattttgtttcattgcgtcgtcaatttgtcgttgttgtatgacgaaacacataccacttaagtgcg tgccgcacgtgcagcaaggttttttcctcgaacaaccaatcatattattgcatgatttgtgacattgtcgtttctgttgc cgtcgttcttgagctctctattggataatctcgtaaaacgaagcgacatgagtttcgaagtagattgtgtactttggttt cttaaagattttttcttttaagggaggaaccaaaagcgcgtctttttctcacttctgagaagaaaaaaatctttttgtgt gctcaatgaaattctttggactatccaactgaaattcatcttattatgatgatttttttgtttgtctttttcagggcgaa cgtggtacctcggtatgttatgagcgattttgagatttttatgccttcaagtgagatccattttttaattgagctatttt taagcaatttacttagatgttatttttttttctttgtttagggtgacgatggaccaatggtaagtcgatttaattaccta gcctgcttgcagggaatttggacctgtcgcgtgcaatccgcgagtgaatgactcattccgatctgtagaaaaccacaact aagagaagtagccataaatgaaacgaactcggaccaactcaaaggagacttaaaacttgtgaggatgtgggtgaaaacgt ctttgaaagtctcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattaatgaaaagatcatgcacgaactgaagt agaaatactgcatattgatataagtattaatgatcaactcacagtaagacttacttcgtttttagggagacccaggccct cccgggatgccaggacctcaggtaatgaagtgtgctttacgtttttctcaattttgatacagtgttgccttgttcacggt tcagtccctctaaataaaatgtgcaaacatttgcgaacaaaatagaagggaaagggaataaaatacattggtggcgaggg gacccaaaagaaatatgaggcctcctcgaatagcacttgtgacccatcggagctacaaccgagatttatacgtttgcttt ttaatgacgtatattagtgagtaaataattagatttctgattccttatgtttgttgatataatcaggatcttttgtattt aggtatatacacgtttcttttcaattgtaaagagcccagagccttcttcattgtgtaggcgctatataaattaaacttac actgctgttggacagtctaattatgtcactcttcacgtatgcaattgaggtgtgggcttctgcccactacagtaaatatc tctctcatattgacaagttttgtaagcgagctttacgttatagctacactagcaaatacacccccataacggatgtaatt ggaatgaaagacaggcttctttgggaggagataatctctgatagcgcaaatccattacatgaacttttacctgctcagag agctaggagcctcaggaaaagaggacatagctacatcctgcctccagtcagaaccgaacgctttaaacgttgttttctta atagatgtcttttcgaatttgtgtagttacttagtcttgtatatacataatagatagatatatgtaggaaattgtaagtc cagacgttttgtttctggaattggttctttttatttttcaaataaagatctttacttacttacttaaacttattattatt tttgatttttctgtgcaattccagggcccaccaggacaaaacctcttgaatgcggtaagaaggtttacttcaagaatatt atgagaaggtttacttcaagaatattatgtgtgaatagattgttaatgactggtccacacagcaggaagccatgtagctc catgtcttttcatcgtttccattgagtgaggaaaatcatcacnnnnnnnnnnnnnnnnnnnnnnnnnnnnggcgctctct cattggtcaataggtatacgtagatgacagtatgtaaacacagtttgacatgacgattttttattgattgttgtcaagtg cgcgttgcgattggctggtagggaacatgagcgcgtgtcaggaaaatttcgattaagactgaagtaaataaatagcattt ttcttcctttgtcgaatcattttcgagaaatattttacaaaagcaatagaggacctttttttgtgattacataacctcat cgaaacactcgaggagttggaagaattctcgacagtcatgcaaactctcgactgcgtctcgggtttgcataactgtctcg aattctcccaactcccctcgtaaacatggataaagtcctctgttgcttaaatttaacgttttgtcttttatgttgatggt gtggcttgctttgatgcaaacactataataataggctattctcgaattgtgccggaacaaaagaacagagacgatgttga gagcacctgtttgcaatttcctttgtacaaacaactaaaaatgcaaatttgtcctctcaaacctgactttgttgttttgt tctggcttgattagaaagtggcctattgcattagaaaagctttaagaccttcatcataacgaggttacctttagcctcgc tgtcaagctcaagccaagatctgaccttttttgtgattatttttactttttttctcatgatttctttattttctattttg gtaccattgttttttttcgacagcttgatctaggatctgccgacaaagggcctttgcctggtgcgagattgtactcaagc aaggtaattgctttgtaaaattccagtttatggtagcatttcctcagtagtttgcaacccacaaataaataaatggctac ccaccagactgttgaagttaatttgctctcccttaatcactcgatagtgacttatccgatggagagtgataccgttcaaa gaatcgcggcttgtgtgtgcggcgtcctgtgctcttggagaaaataccacaggacaaaatggtttctatcaattatgtcc tgtgctttccatgtaggagcaactgtgagcgttccatcgtgtcgtttcctcttatatttaatttgtattatcattttatc gttttgagatctaatttctttacgcttcttctctagcgtgcagagcatggaatccctgcagccacagaacaaacgcagga taacacagtgcaaagccagctcatgagggtattttatttgtttgtgccacactcagtctcaatagacttgagagcgtatg accgtctttatgtacactgccttgcgcgctagaaagactatttttaaggcttgactcgcgctagcggaaaaaaaatcacg tgatatctttgtgggagaatctttgattaggggcaatgggaagaatgttaattcttaaaaattcaaaacgttatttttgt tcatgatctgacagatcgacgccctcgccaaactcgtgttcaacaaaattacaagctacagggctcaaaatggtacactg gaacatcctgccagatcgtgcagagacattcagctggaacacccagaatttcagagtggtttgtatcaaacttcactaaa atatgctccattgttatagtattccccttcgtattagagaggtaaaaatgtgcatctgtcgctcacggccaacattcata tgggaagaacaaaaggtcaatgaggctgaagcgcatgagcagtgggaccgttagtttgcatagcattgcttgtcacgtgc gttgcatcgtcaataagtaagtgatctcttcagcatgcaattccactaatttctcaaattagtgtcgtgtctgttttaat tggtgtatgacattaagaaatatggaagcctctgtaaatatgcgagtcttcttattcggagaactttgctgatgtcgaga gagaaaaaatgcagaagttcctgcagtcccagtctggctatattgattatcccgctttttttactgtaaaaccttgctgc ctaccaatgaagttgtcgaatactaatatttggtagtgtgggagaagtgggaaaatcgagaaataacacaaacaccacaa agctatctaagtgacgtttgttttctttgacgttgttttaactccactctcttattacttttcctactatttcgaagttc cttctgatcttgaccacatcaaacaacctcccttattcgtgatgtttttttttcttttatcgtgctctaatgttttttct gttttaggtgagtacaccattgatccaaacgaaggatgtagcagcgatgctgtgagagtttattgcgattttgagaagca ggcaacttgtgtggacccaaagaaggccagggtgagaatcttacatgtctaacacagctgcgtaatgatattcaggttac cgtgtgtaggcgttacaaggtgtcgcagtgagaccgtctaagcctaattactcaatttgggaaagataatacgaaaagct cgtttttgactctttcgagcagttcagacaaataggaaaggatggcataatgcctgaccacgcagcaataatcctagata gagcgtatcaaagacatgtaaattgagactaggtcagtcgctgggacaccgccccgacgcggcggaagaaactcaaagcg tttacggaagataccaacgtcgaacacagggtagcgtgcaatgctctcgcttccgctggaacagcacaactgctttaaat cgatttactcacattgccttcctcatttcttgacaggtcgtggttggagctaacgaaactgggccaggacgctggacaaa cgaagacgaaccggtaatccaaaatatcgataatactccaaacgtatatagatatattttctcttctcttttcatttcgt tttgtaaaattccagtttatggtagcatttcctcagtagtttgcaacccacaaataaataaatggctagaagattccata aatatgtgaaacaaaatgtttttttctttgcttggcagtttcaaatgttttgttgaaaacgttggaattcttgtgtcaca cgtacggcgaaatcaaagccggggcttcttaaggattgagctccaaattactaaacctattaggagcctcgctcttcatc ctgagggcaggatagccaatcgtggaccggaacagagctttcgcatcgaaacgtgtgatcactagaaaaacctccgactg taaaaataacgcaacttggtaggatgtttactcctgttgataggctccctttgaggaaagaagcacaccctcacgctnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnggcccaaacgcataaaaaaagtttgcgtttactagcgttcgcgtttacaatcgtcttcgtgtgga cggggcctaagaagtcttttgaccactcaagggttcgaagggaaaatgaaacgctcaaacgtgtcttgtcacggagtata aaggttgttggcgacatttctgctcccagctgtacgtaaatggaccccaaccttttttattttgccttttatttgtttgg ttatttgctttttattctgacacggttagtacaaatttgagtaaggtaataatacttcattcttctaaatcagtctgaat tgattatctggtggtttcttcatttgtttacattcacagatggcgccagaaggaaacaaaaaactgcgcatcgaagtttc cacgaagcagcaaaacagcctgccaatagtcgattgggcgccacaaagtcaagtggattcgcagctatccgtcgaacttg gcccagtttgctttgtgtattagtgcagtttatatgtatattttatctttctgctttgactattagcaacggaacaaacc ataacctttcaatctatagatgcttccgaataaagtatgaagtagcgcgnnnnnnnnnnnnnnnnnnnnncgtcatttcc ttttagtttttgtgatttgatattttcttttcttgctttattaaagacaatttaagaggagtccgaaacaaaaaaagcga acgagcaattgctgaaattttatgtatcttattgttacacgattgaagaaataaacttcttgctt |
Protein
Protein ID | aug_v2a.10004.t1 |
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Definition | - |
>aug_v2a.10004.t1 MRIDALAKLVFNKITSYRAQNGTLEHPARSCRDIQLEHPEFQSGEYTIDPNEGCSSDAVRVYCDFEKQATCVDPKKARVV VGANETGPGRWTNEDEPMAPEGNKKLRIEVSTKQQNSLPIVDWAPQSQVDSQLSVELGPVCFVY* |