Gene
Gene Model ID | aug_v2a.10344 |
---|---|
Locus | scaf3970 : 10807 ... 16605 : - |
To GenomeBrowser | scaf3970:10807..16605 |
Genes list of scaffold | scaf3970 |
Manual annotation
Study field | Collagen |
---|---|
Gene name | Collagen Domain Containing Protein27 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
aug_v2a.10344.t1 | gi|637311907|ref|XP_008110987.1| | PREDICTED: collagen alpha-6(VI) chain [Anolis carolinensis] | 6.0e-24 |
aug_v2a.10344.t1 | gi|156394356|ref|XP_001636792.1| | predicted protein [Nematostella vectensis] | 9.0e-22 |
aug_v2a.10344.t1 | gi|558168355|ref|XP_006098466.1| | PREDICTED: collagen alpha-2(V) chain [Myotis lucifugus] | 4.0e-16 |
aug_v2a.10344.t1 | gi|675853548|ref|XP_009012334.1| | hypothetical protein HELRODRAFT_190437 [Helobdella robusta] | 7.0e-16 |
aug_v2a.10344.t1 | gi|410903702|ref|XP_003965332.1| | 2.0e-15 |
Transcript
Transcript ID | aug_v2a.10344.t1 |
---|---|
Definition | - |
>aug_v2a.10344.t1 ttgacatgcccaacatttttctcccaccccccccccccctacataatgaccggtcccttaatcgtaattatgttcaaatt ttgtttatggaaagacagatcgtgggtatggatgaataaatctttttccactatccttgatccttaatttttatcgcaca agaaaacccgacaccttcaaaaaacttcacacgagttggctgtcgttcgtcgttcttctcgcctcgtccttttgttgcta gggctaagggaaggggagttgactcttatgtttactgcaatggtttctttttggataacctttacgccacgaacgcttac tgaacttatactactcatagaaccggcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnccttggcattgcaaagtgtcattttcttgactgcttgtgcacagccctttaggccttggact ggccaggattgccaaagggtaagaaaagaccttttcttcattttcacgccgcccactttcagaattttagtcaattttcg acaccataaatcactaattaagaaccaacgaggaaacacaagctcagtgctctcttttctatcaatctctttgacaaatt ttagttaagtgacctgaaaaagtaggacttaaaaattcagcagtcccagctaaggttccgctccaaaaataggtaatggc gttcaaggtaaaccctggctcagttcacttagccaactggttgccttccgcttgttctgtttgtttgaatcagtttcatg gttaaagttgtggctgaaggctttatatatccttaccaggttaaccctggtttagcttctgttcatcatgttttcacgat caatctttcactcatgacgacagtttaaacgcagaaccatgaaagtataaactccactggccaatcacacaagaccgaca ttcaaatgagccaataagcgcaaagtaggtacgtgacacaggcgctgaagcgcgggaagatacaaagaaacaaaaacccc actaggttttgtcttggtttgttgtttttcatctaccacttgccttttcagttgactcgtgaatgcgatcaagtgactcg aggaagtgaaggtgccccgggtcccaaaggtgctacaggaaaccaaggaaatgtgggtccaattggagccaaaggaaatc gtggggcaagaggacctcccggccgtctttcaccaggacaagtgtcacccgtccaagctccccaaggagatcctggtgag cgtggaagacccggagtacccggggatcccggagatcctggtttctcaggacgaagaggaagaaaagggtatcaaggatt tcccggaaaaatgggagccaaaggagaagagggaaaccgtggtgatgacggtgcccctgggaatgtaggatctcccggta ctttggggagttggacgcgatgttcctgggaaatcaatcgcagtgttgataccggccttttgaaggttggtaaaattttc atcactttcgcttttcttatgtttcgttaaacctgtaatggacacttaagtgagaagctggaaggataatacaaatataa taagttcggttttcaaggcatattcaaatccgataaatcaatttagtacttaccaaatcagtgaatagcaattttcgctc gttttgattggctcccgtaacttggaatatccttggatattcagtgttttgcaaacggagagaaaaatggcgcgtcgttt cgcgaaagtttcagaagaagaaattgaaaaagcgtttttttatccatctgatttggtaaatactaaaacaactatccccc tcagggtcgatgaagagcggtggatatatacctcgacgcttcgcgcctcggtatatatccaccactattcacctcccctt cggggggtagttgtataatattcatttgcctccgaacgtctctgaaggagcatattgtgaatgttgggtttaaatttcgt tttagtcatttgacgaaatccattaaataagctcttccagattctaacaccgtgccttgaaagataccgtgacatttttc ttgtttaattaagagaattcgagaaagaactcttgatgattttgtgataaataattatgaatgaatattctgttggtaat taaataaattacttgtttggggttgtgatatattatttgagacttcatgcattaagatgacaactcacttgaagtaatga agatctagaggttgtagtttgtacgagtcgaagaagggtttggcgtgagttttataacaccacaggcaatggactttttc gcttgtcgatttttgtttttccaatacagatcgtgtgacgatacttaggaggtttgaaccttgcgagcatgtagatgttc aactttggaagaaaatactctactgtctatcgtcacatgatctgtacagagaaaacaaaattgacaagccaaagaggtct atttggttttgcaacccgatgtcnnnnnnnnnnnnnnnnnnnnnnnnnnntaaatgctcatcttgcatcttgcaccttca tcacagactcagtgcgaatacgatgttattcccgttattgataaaaaaggatgcgttcaaacactgttgttgtcggtaat aaatctcttacatgatagtgtgctttcttggtagttttgcttgcaatttatggtaccacaaacctaagagaaccacacac tctctttgtatttgtttcatgtcatttttcggttgatttaacacaagcaaaatgcaccttcttgagctcccttttcttgc gtgatgtttatccgcgcacgtgtcttcgcgagttgttcgcccttcattcgcgtgcgcgcggaaaattctatccgtcaata acttgatgttatctttactacaggagcatatgattggtgagagccaggggtggcgaaatttaattgctctaagaaatata gtcaaattattttttatcttgaaatcgattcttgaagaatactctagcacaggctgtaatcgattgttcgaaaaaaaaag agtgctttctttcatcttgtgagccgaacctcactgaataccatgtttgttgatcttaaaatgacttcttattaacatgc tagtctcagttaaaatgggtctttgatttccatccgctgtctgctgctgtgcggattattgtccgcaaatctctaatccg gaaattctaccgaggattacaacaactaacaaagaaaaccagtcacggttttcaatgtattagcatcgtgtcatgtaacc aacaccaacaagcgacattgacgtttaagaattcccgctcgagtatcgtggcttgatgctcagaatctctcagagggaac tgaaatgcgtctgacatcgacattcgtcctcgtgttctggacattcgtaagtgtgatcgattgtcaagtggacattaatt gggacagacgcgaatgtcgtgaggtatgtgaacgagtctttctcatttcatacttaatttcctcgatattcgtgttcagt gacctttattatgaggctataaataatccaaatagttgttagagtacattcacattttttggtttaacttaagggcgatt gtgttcctcatggagaccagaatttaaatgatatgcagtcgagttatttgactcccaatgaccccagccccctataagtt tgcaccacattcaaccctctcgcctctcccaaccgtgcttacaaacttctcttttccccaccccacaccttctataagtc ttttgcataacacacactaagtaaactttgacgagatcggttacgcctctttgtctttttcttgttttggacctttgtat tctggattagatcgctttctggctaatctactgacctaagtatgtttccatttttctcaaatctggtccctaatctcatc ttaagctaacaatattctatgctgaaaatctcttgcttcagatgatggaatcgtgcgagttattatccggtcttcctgga cttcccggaccagctgggacaaagggtgttgtcggacaaactgggccaaagggagcgagaggaaacaaaggcttccctgg ggaacctggaaaccccgggacaagagaaggtttccccgtgaaaggggaaaagggacaaagaggagagaatggagcaaaag gtgccaaaggcttcaggggaaatgacggccttttgggaaatctaggagtgcaagggtcagtgggctccgctgggttgaaa ggggatcttggaagaaagggagaaatcggtcccccaggggaggacggtgaaaccggtgcgaccaaactgaactggaaaca gtgtgtgttcacaccagatatgaccacgactaaaggagagttgacggtaagtttgtgggaaaaatattgcatttcctggc tattatgagatcaaaagtagtagcattttatacagaaacagttatattgtcttcagaaacatgtgaagccctcgcgcaag gcactttaggcaactgatttagagtggttatgtaaagccaatctaactcggtttctatttcttttctagtactgcacatt tttgaaggagagcagtgaaacatcattgcaggtgacttatcagggggagacacacattgggttatgcgcggattgttgca agacctnnnnnggtacttcacatttgacaacttgacgtgtaccgatcccgcaaacattgatgctgtattcagcgcattgc atttgccgcgaactggtgtagacaagaataccttaccgagtcatatgcatggaactatctctggttattgcaattctgtc ccccggggatcagttcgaattggtttgtctttgaatgattgcctcgggtatcccgcaaatgaactttcgtttacccctgt tgtaagactgaatagtcgaataattattcaagaagttcttgctccacaaatgtaatattgctaaagcaaaatattttgta gagtgtatttcacagtttttctctaaaataccagtggtaaatctgtaattctgccaaatgtttcaaaaaaacctcctaac caaccttataagcatccctttaccttaaaaggcctgtccaagcggtagatagtttgcggtaaaacatatgttgggttaga tttgaaccctatcaaacatagaagcttgtaacatgatgtttgcgcgcacacgtgttttaaaataacccaataaacaaggg ttttgtgtcaattgtgattaaaaaaaattgttgggttaa |
Protein
Protein ID | aug_v2a.10344.t1 |
---|---|
Definition | - |
>aug_v2a.10344.t1 MTGPLIVIMFKFCLWKDRSWPFRPWTGQDCQRLTRECDQVTRGSEGAPGPKGATGNQGNVGPIGAKGNRGARGPPGRLSP GQVSPVQAPQGDPGERGRPGVPGDPGDPGFSGRRGRKGYQGFPGKMGAKGEEGNRGDDGAPGNVGSPGTLGSWTRCSWEI NRSVDTGLLKNLSEGTEMRLTSTFVLVFWTFVSVIDCQVDINWDRRECREMMESCELLSGLPGLPGPAGTKGVVGQTGPK GARGNKGFPGEPGNPGTREGFPVKGEKGQRGENGAKGAKGFRGNDGLLGNLGVQGSVGSAGLKGDLGRKGEIGPPGEDGE TGATKLNWKQCVFTPDMTTTKGELTYCTFLKESSETSLQVTYQGETHIGLCADCCKTXXGTSHLTT* |