Gene
Gene Model ID | aug_v2a.11041 |
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Locus | scaf4258 : 36066 ... 39745 : + |
To GenomeBrowser | scaf4258:36066..39745 |
Genes list of scaffold | scaf4258 |
Manual annotation
Study field | Retrovirus |
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Gene name | Adi-Retrovirus-related 20-24 |
Description | DNA sequence of this gene model showed similarity with that of Adi-Retrovirus-related 20-1. This gene model contains Rapsyn_N, SHNi-TPR, PPR, TPR_1, TPR_2 and DUF2977 domains. |
mRNA evidence |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
aug_v2a.11041.t1 | gi|348584632|ref|XP_003478076.1| | PREDICTED: tetratricopeptide repeat protein 28 [Cavia porcellus] | 0.0 |
Transcript
Transcript ID | aug_v2a.11041.t1 |
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Definition | - |
>aug_v2a.11041.t1 gaaattgcctaagtttttgtcgcgtttgaatgaaatgagtggtggtagagaaaatatgtatttagtttcgggatcatttt gaaatttttgagaatgacatttttgattgcaaggttttgtggatggtaggtaaggggaaatggaattctgtcggtttctt cgttctgtgaaatttgtagtgctgtgtctcggtcgatttcttgggcgaggtgtttgcctgtggttacagctgagtcaggg tatccgcgttttttgaaaaaaatggcacatttccttgcatttgttgttaaagtcggtgtcgacactgcagaggcgtctca gtctattttctctaccaccacttcaatatacatctctgttgaaacttcatttacaatttatcaactgtattttattaacc aataagtaaatagccttttgcgcctattcgacctggatctcattaaaaaccccgcataaatctgtcccaaaaacccattt gaccaaccctgacatgcatcttaaaaccttcttctttgaaccccctggctcaaactataatcaccctcgaataactactg agcttttggttcaaaattagttccaggtaacaaagatttttgattttgaacaacatgtatcggtgccatcacaaactagt gaaaagtaagcgacatttaagagatcgctggataagcttttgatcagtatggaaaaaaaactactatcatgagtccaaaa gcagatccaggaaaggctaaattactgctatgaacatattcaaattgatctctgttgggcagacaacattgaaagaaaaa acaattgatagaatcagttgacaacaactcctctactaaatattccttcagctgttacgtatatgatttctttgtttgtt tcactaattctttaattacttattcaaattttccaaacagaaatgaatgaccaagacagaaatgtaaaagtctattttag tacgacaaaagatttccagtcactgggtgaccatcgaatggctattgagtaccacgaaaaacaattgaaaattgcaatag aatgtggtaatctggccacagaactaaacgagtatgggtatctcggcaatgcttaccagtcattgcctgactatcgaaaa gccattgagtatcatgaaaaatatttgaaaattgcaaaagaaatcggttatcggcgaggagaaggacaagcctatggaaa tattggtattgcttaccagtcattgggtgactatcgaaaagccattgagtatcataaaaaacatttgaaaattacaatcg aaatccgtgatcggggcggagaaggactagcctatgcaaatctaggtattgcttaccggttattaagtgactatcgaaaa gccattaagtatcatgaaaaagatttgaaaattacaatggcaatcagagataggggcgggaaaggacgaccctatggaaa tctcggaaatgcttaccagtcattgggtgactatcgaaaagccattaagtatcatgaaaaacatttgaaagttgcaatag aagtcggtgatcggggcggagaaggacgagcctatgcaaatcttggtaatgcttaccagtcatcgggtgactatcaaaac gccattaagtaccataaaagacattcgaaaattacaatggaagtctgtgatcgaagaggagaaggagcagcatatggagg gctcggaaatgcttaccattcactgggtgactttggaaaagccactgagtatcatgaaaagcatttaaaaattgcaatag aaatcagtgatccggacggagaaggacgagcctacggaaatctcggaaatgcttaccggtcattgggtgactatcgaaaa gccattgagtatcatgaaaaacatttgaaaagtgcagtagaaatcggtgatcggagcggagaaggaaatgcctatggaaa cctcggtagtgcttacaagtcaatgggtgattatcgaaaagccatggagtatcataaaaaacatttgaaaattgcagtag aagtcggtgatcggggaggagaaggagcagcatatggagggctcggaaatgcttaccattcactgggtgactatggaaaa gccactgagtatcatgaaaaacatttgaaaattgcaatagaaatcagtgatcgggacggagaaggacgagcctatggaaa tctcggaaatgcttaccagtcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgccgtgattaaacaaatgtcatcagttggtttaattcacatcgct gctcacggaaacaagcacactggagaaattgctttgtctccaaaccctggatggacatcgaagttccctcaaaaaaagga ttacattttgaaagtgtccgatgtgcaagctgccaatcttcgagctcgtcttgtagtcctaagttgttgtcacagtggac gaggcagaatcttgaaaggtgagggtgtggtcggtattgcacgagccttcttggcagctggtgctcgttctgtgttggtg tccctttgggcaatagatgatgaagctaccatggtgttcatgaaaagtttctaccaacacttgaaggaaggaaaaacggc cggtgctgctgttcaccaatcaatgaaatctcttcgtgaatctgataagttttcggagatgaggtactgggctccattcc aacttatcggagatgacgtcaagattgaattcgagtaagatgtcgttaaaaaacgcggcaaataattatcctatcttttt |
Protein
Protein ID | aug_v2a.11041.t1 |
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Definition | - |
>aug_v2a.11041.t1 MNDQDRNVKVYFSTTKDFQSLGDHRMAIEYHEKQLKIAIECGNLATELNEYGYLGNAYQSLPDYRKAIEYHEKYLKIAKE IGYRRGEGQAYGNIGIAYQSLGDYRKAIEYHKKHLKITIEIRDRGGEGLAYANLGIAYRLLSDYRKAIKYHEKDLKITMA IRDRGGKGRPYGNLGNAYQSLGDYRKAIKYHEKHLKVAIEVGDRGGEGRAYANLGNAYQSSGDYQNAIKYHKRHSKITME VCDRRGEGAAYGGLGNAYHSLGDFGKATEYHEKHLKIAIEISDPDGEGRAYGNLGNAYRSLGDYRKAIEYHEKHLKSAVE IGDRSGEGNAYGNLGSAYKSMGDYRKAMEYHKKHLKIAVEVGDRGGEGAAYGGLGNAYHSLVGLIHIAAHGNKHTGEIAL SPNPGWTSKFPQKKDYILKVSDVQAANLRARLVVLSCCHSGRGRILKGEGVVGIARAFLAAGARSVLVSLWAIDDEATMV FMKSFYQHLKEGKTAGAAVHQSMKSLRESDKFSEMRYWAPFQLIGDDVKIEFE* |