Gene
Gene Model ID | aug_v2a.11043 |
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Locus | scaf4258 : 64756 ... 71446 : + |
To GenomeBrowser | scaf4258:64756..71446 |
Genes list of scaffold | scaf4258 |
Manual annotation
Study field | Retrovirus |
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Gene name | Adi-Retrovirus-related 20-32 |
Description | DNA sequence of this gene model showed similarity with that of Adi-Retrovirus-related 20-1. This gene model contains Rapsyn_N, DUF2977, PPR, TPR_1 and TPR_2 domains. |
mRNA evidence |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
aug_v2a.11043.t1 | gi|698462439|ref|XP_009703877.1| | PREDICTED: LOW QUALITY PROTEIN: tetratricopeptide repeat protein 28, partial [Cariama cristata] | 0.0 |
Transcript
Transcript ID | aug_v2a.11043.t1 |
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Definition | - |
>aug_v2a.11043.t1 gggctgttacggtgtgccgagataactttcagcccggtattacatgaggtgagccagcccggttgatnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnntttctagcagtgcttacgcagcagagataaaggtattcgaaacctgacctctgtgatgccggtgcag tgctctattagttgaactgttaggcaaaaatggaagctggtcgttatgttggtcgataatctcgtagatgattgatatag atatttagaaaatagctcaaggaaaatacgcgcgctgattggttacccctttcccgtccaaggagttccccattgacgag taaaatcgtctggcgttagccagagtaaaatctataagtgtcctgagcgctcattcggcagtcaaggggttaataatcgt atttctatttagcaattattcgccgaaggcaaggtgaatatttagaaaataaaccccttccggcgactagtatatcggct gataatgtccgcggctgagagattgtccgaataatgaacatttggccgagaagcgaagcttcgagggcaagtgtgaaatt ttgagaattatgttcaataactccaacttagtgaaccaatcaaattgattgaaactccaagaccagtgagtgtgtataca ccaatcatatctgtactgatttgcttggatgaagaagtgtgtagtgtgactgatatgaacagtagggcgctattttcatc taattggttaccaaccgaccagtttttagttcttgttccctctaaactgacgtctgtggttactcaatggtttatcacaa tatcatcacttcctcattggctcagcttcattccgcattgtttctttatatttgcgttaagaaacggatggctgggcgga ccaaaagaaccaaagaaccaaaaaacatatatctctcttgcaacttcattaaacattgataatgtatcaactatatctta ttaaacaataggtaaatagccttttgcgcctattcgacctggatctcattaaaagcccgtgtacatctgtcccaaaaacc catttgaccaaccccctttcatcttatgaacgtacaagacatacatcttaaaaccatcttccttaaaccttgaaccccta ggctcaaagtgtaataatcccgaataactgctcagcttttgcttccaaattttttccagcccattaagatttttgatttt gaacaacatatattggtgccatcacaaacgagtgaaaagcaagcagtataaaaaaaaagcaactatcgtgagtccaaaag cagatccaggaatgttcaaattgatctctgttaggcagacaacattgaaagaaaaaaaaatagatagaatcagctaacaa caactcctctacaaaatattccttcagccttacgtatatgatttccttgtttttttcactaattctttaattactcattc aattcttctaaacagaaatggatcatcaagacagaaatgtaaaagtcaattttagcaagagaaaagatttccagtcactg ggtgaccatcgaatggctattgagtatcacgaaaaacaattaaaaattgcaatagaatgtggtaatctggccacagaagt aaacacgtatggatatctcggcaatgcttaccagtcattgcgtgactatcgaaaggccattgagtatcatgaaaaatact tgaaaattgcaatagaaatcggttatcggagaggagaaggacaagcctatggaaatcttggtattacttaccagtcattg gatgactatcaaaaagcaattgagtatcatgaaaaatatctgaagattacaatagaagtcggtgatcggagcggagaagg acgagcatatggaaagcttggtaatgcttaccagtcattgggtgactatcaaaaagccattgagtatcatgaaaaagatt tgacaattgctatggaagtcagtgataggggcggagcgggatcagcatatggaaatctcggaaatgcgtacaagtcaatg ggtgactatcgaaaagccattgagtatcatgaaaaacatctgaaaattgcaatagaagtcggtgatcgaggcggagaagg aggagcctgtggaaatctaggtaatgcttaccagtcattgggtgactatcaaaaagccgtggagtatcatgaaaaacttt tgaaaattacaatagaagtcggtgatcgggccggagaaggaaaagcctatggaaatctcggtaatgccttcagttcattg ggtgactatcgaaaagccattgggcatcatgaaaaacatttgaaaattgcaatagaagtcggtgatcgaaggggagaagg aatagcctatgcaaatctcggcattgcttaccggctattaagtgactatcgaaaagccattcagtatcatgaaaaagatt tgcaaattgcaatggaaatcagtgatacaggcggagaaggacgagcctatggaaatctcggaaatgtttaccagtcattg ggtggctatcgaaaagcctttgagcatcatcaaaaacatttgaaagttgcaatagcagtcggtgatcgagacggagaagg acgagcctatggaaatcttggtaatgcttgccagtcatcgggtgactatcgaaaagccattgagtatcatgaaaaacatt tgaaaattgcaatcgaaatcggtcatcggggcggagaaggaggagcctatggaaatctcggaaatgcctaccacatgtta ggtgacgatcgaaaagccattgagtattatgaaaaacatttgaaaattgcaatggaagtcggtgatcgggccggagaggg agcagcctctgaaaatctcggtaatgctcacgcttcattgggtgaccatcgaaaagccattaagtattatgacaaacctt tgaaaattacaatagaactcggtgatcggggcggagaaggacgagcctatagaaatctcggttatgcttaccagtcattg ggggactatcgaaaagcctttgattatcatgaaaaacatttgaaaattgcaatagaagtcggtaatcggggcggagaagg acgagcctatggaaatctcggtaatatttaccagtcattgggtgactatcgaaaaggccatggagtatcatgaaaaacat ttgaaaattgcagtagaagtcggtgatcggggcagagaaggagcagcatatggagggctcgcaaatgcttacagttcatc gggtgactatcgaagagccattgagtatcatgaaaaatacttgaaaattgcaatcgaaatcggtgacctgagcggagaag gagtagcctatggaaatcttggtattacttaccggctgttgggtgactgtcaaaaagccatcgagtatcatgaaaaacat ttgaaaattgcagtggaagtcggttatcgggacagagaaggacaagcccatggaaatcttggtagtgcataccagtcatt gggtgactatcaaaaagccattgagtatcatgaaaaaaatttgaaaattgcaacagaagtcggtgatagaggcgaagaag gaagggcttacaacaacattgcaagggaatacttttgtcttgaacaatttgaaaacgcggtggataattatgtttgcgct tttggaggcctataacgctgtgaggtcttgcttgaagtgtaacgatgactggaaaataaactttcgtgagctatacgaaa ggacgtacactggcttatggttatcgttgctaagaatggaaaagatcgatgaagctttgtttgtggttgaacaaggacga gctcaaactttgtctgacaatttgtttgattcagtacaaacttcctgcgtctttatcagctgccaccattaacaccaaag agacaatatctctcctcctcacagagctctcttcaccaattacttttctagcaattcaaggacccacaatcaacatctgg tttctgagcaggagaaagcaaattgcatttcgacaagtgtggctggagtgtgatggaacagagaaagatcccatacgcgc ctttctgcaagcagctttaagaaaaattggagctgaagttacagttagatgtgaagatcgcacttttgatgaaattgtta atcaatgccaatcacgtagagaagtgcagcgccacgaaggtggaaaaccgccactgtcgccttcagaaaatccctttaga ccattttatgatgcagttattggtccaattatagatttgcttgggcctgacgacgacgagttggtcattgttcctgatgg tgcgctttgccttaccccatgggctgctgttattaaatcgattaggattcgcactgttccatcactcacaagttatcaat taatcttgagtgtatctgaaggccatcacatgaagacaggggcgcttttggtcggaaatccgtgcttaaaccagttaagg aaaccagaaccagagttacaatgtgctcaagaggaagtagagatgattgcagcaattctcaataccagacctctaacagg gagacatgcaacaaaagccgccgtgatgaaacaaatgtcgtcagttggtttaattcacatcgctgctcacggaaacaagc gcactggagaaattgctttgtctccaaaccctggatggacgtcgaggttccctcaaaaaaaggattacattttgaaaatg tccgatgtgcaagctgccaatcttcgagctagtcttgtggtcctaagttgttgtcacagtggacgaggcagaatcttgaa aggtgagggtgtggtcggtattgcacgagccttcttggcagctggtgctcgttctgtgttggtgtccctttcggcaatag atgatgaagctaccatggtgttcatgaaaagtttctaccaacacttgaaggaaggaaaaactgccagtactgctgttcac caatcaatgaaatctcttcgtgaatctgataagttttcggagatgaggtactgggctccattccaacttatgggagatga cgtcacgactgaattcgggtaagatgtcgttaataaacgcggcaaataatt |
Protein
Protein ID | aug_v2a.11043.t1 |
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Definition | - |
>aug_v2a.11043.t1 MDHQDRNVKVNFSKRKDFQSLGDHRMAIEYHEKQLKIAIECGNLATEVNTYGYLGNAYQSLRDYRKAIEYHEKYLKIAIE IGYRRGEGQAYGNLGITYQSLDDYQKAIEYHEKYLKITIEVGDRSGEGRAYGKLGNAYQSLGDYQKAIEYHEKDLTIAME VSDRGGAGSAYGNLGNAYKSMGDYRKAIEYHEKHLKIAIEVGDRGGEGGACGNLGNAYQSLGDYQKAVEYHEKLLKITIE VGDRAGEGKAYGNLGNAFSSLGDYRKAIGHHEKHLKIAIEVGDRRGEGIAYANLGIAYRLLSDYRKAIQYHEKDLQIAME ISDTGGEGRAYGNLGNVYQSLGGYRKAFEHHQKHLKVAIAVGDRDGEGRAYGNLGNACQSSGDYRKAIEYHEKHLKIAIE IGHRGGEGGAYGNLGNAYHMLGDDRKAIEYYEKHLKIAMEVGDRAGEGAASENLGNAHASLGDHRKAIKYYDKPLKITIE LGDRGGEGRAYRNLGYAYQSLGDYRKAFDYHEKHLKIAIEVGNRGGEGRAYGNLVEVGDRGREGAAYGGLANAYSSSGDY RRAIEYHEKYLKIAIEIGDLSGEGVAYGNLGITYRLLGDCQKAIEYHEKHLKIAVEVGYRDREGQAHGNLGSAYQSLAAT INTKETISLLLTELSSPITFLAIQGPTINIWFLSRRKQIAFRQVWLECDGTEKDPIRAFLQAALRKIGAEVTVRCEDRTF DEIVNQCQSRREVQRHEGGKPPLSPSENPFRPFYDAVIGPIIDLLGPDDDELVIVPDGALCLTPWAAVIKSIRIRTVPSL TSYQLILSVSEGHHMKTGALLVGNPCLNQLRKPEPELQCAQEEVEMIAAILNTRPLTGRHATKAAVMKQMSSVGLIHIAA HGNKRTGEIALSPNPGWTSRFPQKKDYILKMSDVQAANLRASLVVLSCCHSGRGRILKGEGVVGIARAFLAAGARSVLVS LSAIDDEATMVFMKSFYQHLKEGKTASTAVHQSMKSLRESDKFSEMRYWAPFQLMGDDVTTEFG* |