Gene
Gene Model ID | aug_v2a.12089 |
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Locus | scaf4765 : 1803 ... 3441 : + |
To GenomeBrowser | scaf4765:1803..3441 |
Genes list of scaffold | scaf4765 |
Manual annotation
Study field | Transcription Factor |
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Gene name | Adi-HES4 |
Description | Named thus based on a BLASTP result against NCBI nr and molecular phylogenetic analyses (NJ and ML). This gene model has WRPR motif in its C-terminus. This gene model has Hairy Orange domain. Adi-HES4, Adi-HES3 and Adi-HES5 are aligned tandemly in the genome. Nematostella HES genes are also aligned tandemly in its genome, but relationship between these coral and Nematostella genes has not been elucidated yet because of low bootstrap values. |
mRNA evidence |
Annotation by Blast2GO
Annotation | GO |
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protein | GO:0003677 GO:0005634 GO:0006355 GO:0046983 GO:0050768 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
aug_v2a.12089.t1 | gi|156390536|ref|XP_001635326.1| | predicted protein [Nematostella vectensis] | 0.0 |
aug_v2a.12089.t1 | gi|156390540|ref|XP_001635328.1| | predicted protein [Nematostella vectensis] | 6.0e-40 |
aug_v2a.12089.t1 | gi|260793446|ref|XP_002591723.1| | hypothetical protein BRAFLDRAFT_265744 [Branchiostoma floridae] | 1.0e-37 |
aug_v2a.12089.t1 | gi|156390534|ref|XP_001635325.1| | predicted protein [Nematostella vectensis] | 3.0e-37 |
Transcript
Transcript ID | aug_v2a.12089.t1 |
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Definition | - |
>aug_v2a.12089.t1 ttttttcccacgatggatgaatataaattggcgggatcaggtatgtcggacagttcgcaaaaaacactcaacgagtcaac aagtctcaaacaaatctcaccaaaacccaaaactttgaacaagaaaacaacatggccattgaatgcatcggcagttctat gtatgttagcaagattctctctgaacggagaaaggtaagcgtggcttttgcatgtctaattcatcatttttaactgctga tttgacaatttgttcggcgtaggaataaaaaagataaactcagaactttttttcataaaacctggatggctttattttag gcgaagaaacctctcatggagaaaatgcgtcgagcaagaatcaacgatagcttgaacgaaatgaagaccttagtgttgga tctcctaaacaaagatgtaagtagatttaaattgaatccagtctcaaagtgaaaaacgactcttcttcgatttccttcct ctgtagacagctgtcgtttgcgccttcatatttatcacgaagccataatcaaattatcaaatactagatctaatgccaac gcttatcaattcttttttcatcttattttaaggcttctcgatattcaaagatggaaaaagctgacgttttggaaatgaca gtgacttatctcagagctatgcaacgaaaggactttcgaagcgaaggtgagttttcgtgagaaatattgtttacttttcg tgcataatttaggaaaagacgcaaccgaagctaacgtctgccacttacagggagtaatccggaaaagggcgaaaattgag acgcttcgtatgtggaaaattgagacgtttcgttcaccttatataatatcttacgcaaaacagacctgatactttaagtt tggtaatatagaagtgattaaaaaatctaatcccaccttaatgataatttacgacgaaataatgcataaagttaaaagag gagtcgtttgtttcttcgtagattccaactccattgccgagtatcgagctagcttcaaccaatgcgcgaacgaagtgaac agaaacattctcgccgcgaagggcagcgaacaactcaaggaaaatctcataaaccatttggcatcatgttgccacggcaa cgcaacaagccatgtcacctcgagtcacgcgtcaggggttccagtcatgtctccaagttttcccgccatttcagcaaacg ccgtctgggttccgtatccttcaccaccaccatcgccacaaagcaaatcagctgttttcattcctgtcagcccggttgaa cctgaaattctgcgcacacttataccgaagtctcgcatcagttctccagcttctcggagacatagagtcagcctttcgcc agagagttccgcgacagtagaaacaaaagcggcgttgtggcggccatggtaaacaaagaacagtggcatgggtataaaag actactaccaattattcagagagaacaaatccagagtcgacaggcgatcaaaatttcgtgctgtgcatattaagaagtat tttcatataaatgtaaataaattttctatagaaattctatgaataaaaatgttgtactatgcattcaaatatgctaaatt tactgctaggcatacccacatcaataaagaaagaatttg |
Protein
Protein ID | aug_v2a.12089.t1 |
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Definition | - |
>aug_v2a.12089.t1 MAIECIGSSMYVSKILSERRKAKKPLMEKMRRARINDSLNEMKTLVLDLLNKDASRYSKMEKADVLEMTVTYLRAMQRKD FRSEDSNSIAEYRASFNQCANEVNRNILAAKGSEQLKENLINHLASCCHGNATSHVTSSHASGVPVMSPSFPAISANAVW VPYPSPPPSPQSKSAVFIPVSPVEPEILRTLIPKSRISSPASRRHRVSLSPESSATVETKAALWRPW* |