Gene
Gene Model ID | aug_v2a.12090 |
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Locus | scaf4765 : 11164 ... 13514 : + |
To GenomeBrowser | scaf4765:11164..13514 |
Genes list of scaffold | scaf4765 |
Manual annotation
Study field | Transcription Factor |
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Gene name | Adi-HES3 |
Description | Named thus based on a BLASTP search against NCBI nr and molecular phylogenetic analyses (NJ and ML). This gene model has WRPW motif in its C-terminus. This gene model has Hairy Orange domain. Adi-HES4, Adi-HES3 and Adi-HES5 are aligned tandemly in the genome. Nematostella HES genes are also aligned tandemly in its genome, but relationship between these coral and Nematostella genes has not been elucidated yet because of low bootstrap values. |
mRNA evidence |
Annotation by Blast2GO
Annotation | GO |
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transcription factor hes-1 | GO:0003677 GO:0005634 GO:0006355 GO:0009952 GO:0046983 GO:0050767 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
aug_v2a.12090.t1 | gi|156390538|ref|XP_001635327.1| | predicted protein [Nematostella vectensis] | 1.99965e-42 |
aug_v2a.12090.t1 | gi|617375645|ref|XP_007542037.1| | PREDICTED: transcription factor HES-1 [Poecilia formosa] | 9.0e-35 |
Transcript
Transcript ID | aug_v2a.12090.t1 |
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Definition | - |
>aug_v2a.12090.t1 gacgcgagccgattcccggtattgcgccccaaggtcgagtcgaagcgtgccaaagtattttcctctgacactaaagaacg cccagcacgcgctaatttactaacaaccatggacatggaaattctgaagccttctcactcttctcagagaaattccaaaa aggaaactaaaaaggtatttataggtcttttctgtaagagggaaattcgactcttctttcgtcatgggatcaagttaact tcgacgcagattgaagaatcaaaagcgtcagtacgtttgcattcaaagcaattttttctctatgctttccttgttttgta aaattttgcgaaaaactgtaccaagtttagatcattttgaagaaaagctggaagcaatttacattatttaaaatagtatt ttaatccattctttccttattcgcagtcgaagaaaccactaatggaaaaaatgaggcgagcaagaattaacgacagtctt aatgaattgaaaaacctggtgttggaagctatgaaaaaagacgtaagtgtttcaataaaatctgagtagcccaaagtcat taaggcagaggggcagagccaaatgaatgttctaagggtctgacggtttttttatgttaactttactaagggtcataaaa caaatgaaaaaatagaaaaacaactgacatcaaattccatgattctttgtaggcatcgagatattccaagatggaaaaag ccgatattttggagatgaccgtgaaatatttgcgttccttaaatgcagacacaccagtgcatatgcaaaagcagcaaggt ataaaaaatgcttcatgcaatccatcttagcacctcattgcgtgctaccatgggactattagcttcaagcaagaaccaaa catgtaaaattaaatactagttgaattttattgttgtttcgtgatgtagagtgtttttcttaataaccatttcctcacaa caaattttgcgcagatttttctgatgatcaaagagtatcagattcgtttgttgtggattatgccgctgtagattgatgta atgattgtcttaatgatcgtttaacgccaaagaaatatgaaagcactatgtttaaatttcgttcagtgatctctgaatgt gtcatcctgatatcgaagtttaaatggtagcttcaatcaagacaagccaaatgtttcaggcgtaggcaacaaattgctct aatccagagacaccgtataaatgtagctaatatgaaaaataaaccttaatcggtggtctttttctttagttagcggaaca tattttcgcatttttttgtaccgaaggttttaaatttgaaacctaattaacgaggtgtgacaaacccaggagcttaataa ttgattttattcatatcaaagcctttgaacagagaagcgactgtttgtagttcttttttctttctactattttgtgaaca aatttatcgagacaaaaattgggaaatctcagattttccgatgatctgttgtgtgaggtgggtctatatcaatcactgaa aaacccctgaattcaacactgccgcccactcttagcttccgacacctttaatagtaaagtgtcaaaacatgaaatatgat acttatcaagaccaccgttgtatattctacagatgaagctgctatggcaagatatcgcgctggtttcaacgactgtgcag ccaagctttctcatttactcatgtcagcggataacatcactgtcccagttcgtacacaactcttgtcacatttggcgtcg tcctgccagaaacaaagagaagtctctcattcactcgaacacgaactcctgttatcacctcaacctcaaagccacgcgac actgccgagttttcccgccgtttctccaatcgcgggcgggaacccagcactcttggacacaaacgtatgcctaacgaaca ggttcccctcaccgccatcttcacccctaaataaccaagaaagaaaacatttttctatctcgtcatccatgtcgtcatcg atgccatcatttgttttgagcaacggaattccagctctgattcttccaaacgacgcggttcaacttttgccgctagcgat gccgaatgcagccacatctttcgattcaagtgtttggagaccttggtcatgaaattcacaaatttgtgtgtaacacctgt ttcctgacccttttttttaatcagcactttattcttcttcacttggaaattgttggatggtttttttcgtgttccatgtg cagcttcgaggaactatttatacagggtgcaaaaaatagtaattataaaaaggatataaatattcgtagttagatggtct acaatcaacaaataaaataaattaaaccacg |
Protein
Protein ID | aug_v2a.12090.t1 |
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Definition | - |
>aug_v2a.12090.t1 MDMEILKPSHSSQRNSKKETKKSKKPLMEKMRRARINDSLNELKNLVLEAMKKDASRYSKMEKADILEMTVKYLRSLNAD TPVHMQKQQDEAAMARYRAGFNDCAAKLSHLLMSADNITVPVRTQLLSHLASSCQKQREVSHSLEHELLLSPQPQSHATL PSFPAVSPIAGGNPALLDTNVCLTNRFPSPPSSPLNNQERKHFSISSSMSSSMPSFVLSNGIPALILPNDAVQLLPLAMP NAATSFDSSVWRPWS* |