Gene
Gene Model ID | aug_v2a.12091 |
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Locus | scaf4765 : 19603 ... 21944 : + |
To GenomeBrowser | scaf4765:19603..21944 |
Genes list of scaffold | scaf4765 |
Manual annotation
Study field | Transcription Factor |
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Gene name | Adi-HES5 |
Description | Named thus based on a BLASTP search against NCBi nr and molecular phylogenetic analyses (NJ and ML). This gene model has WRPW motif in its C-terminus. This gene model or EST assembled sequence corresponding to this genome region do not have Hairy Orange domain. Adi-HES4, Adi-HES3 and Adi-HES5 are aligned tandemly in the genome. Nematostella HES genes are also aligned tandemly in its genome, but relationship between these coral and Nematostella genes has not been elucidated yet because of low bootstrap values. |
mRNA evidence |
Annotation by Blast2GO
Annotation | GO |
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transcription factor hes-1 | GO:0001568 GO:0002065 GO:0003007 GO:0005515 GO:0005622 GO:0006355 GO:0007166 GO:0007389 GO:0030900 GO:0035295 GO:0043009 GO:0045664 GO:0048522 GO:0048839 GO:0050768 GO:0072006 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
aug_v2a.12091.t1 | gi|554557759|ref|XP_005873293.1| | PREDICTED: transcription factor HES-1 [Myotis brandtii] | 9.0e-30 |
aug_v2a.12091.t1 | gi|301776745|ref|XP_002923794.1| | PREDICTED: transcription factor HES-1 [Ailuropoda melanoleuca] | 2.0e-28 |
aug_v2a.12091.t1 | gi|157278421|ref|NP_001098313.1| | transcription factor HES-1 [Oryzias latipes] | 2.0e-28 |
aug_v2a.12091.t1 | gi|573899953|ref|XP_006637706.1| | PREDICTED: transcription factor HES-1-like [Lepisosteus oculatus] | 5.0e-28 |
Transcript
Transcript ID | aug_v2a.12091.t1 |
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Definition | - |
>aug_v2a.12091.t1 aaaaaaccaaaaagcaaactgaagcgtcgaaacaatttgagtagcattgagaacgtagacaaagaaaacagcaccgttga aaagaagagtatgaatttcacacgtgcgatcatggtcctttgcttcaccgaagcaagtgagctcgaaatgctttttaacc aatagtggcggaaggaataccattaagaggtttatcgcaatatcaacgctttaacgcctcaacccgataaccttgtgcaa attatcggatgtcaagcagtagcacagacgcttttccgtcgtaaactgttttggttttgacggcttttcatcgcggtcct tggctgcagaatctttgttattcacttgtgtgtgctgtctttttgtgagaaccttggcacaggcgccaacggtgagatca accaatcaacgtgaaacagtctcacgctcgtcacgcgccagtggcgacgtgctctcattgttcatggaatttgtcgtgcg actaacttaatggaccaatcagagcacactgttcccacgacccgcttattcacaaggtcaggcctattgttttaagctgt tgttgtgattgtgattgtaaatgcgacggtaaatatttgcagtgtatgacacaaggagggaagaatttttcccacggctg ttggccataaaacgtggatgccgggcacacgaccgacacacgcagtttgagttcaattcgtacgcaggcgtcacaaaatt taatttgaagtcgctgttaaacaacagacttaagacatggcgactgcgaacttttgcaaacaaccgacggactacgtgag caaaattttaacagagaaaagaaaggtaagacacttcgtctttatcgttttcatttaaatcaatttcagcctcgtgatgt ttggatcgtttccgaacctccacgtttatgcgttttatctagcacacgagtgagtcattaacaacgttttaattgattta taggcaaagaaacccctcatggaaaaaatgagacgtgccagaataaatgacagcttaaacgaactcaaatctctcatatt ggaagcgttaaataaagatgtaagcacttactcatgaatagcatgtccatattgtagaaaccnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnaactcagttgacctcgaaatgttgaacgtttcttgaactcatagttgttgtcttgttaa cttcttaggcttcgcgatattctaagatggaaaaagctgatgtcttagagatgactgttcaatatttgcgagagcttaag agaacagagaagataacacttcaaggtaggtataaatatatgtatcgataaaaaaatagaatgtaatatttacatcctgc atcatgagacgttgtcattatcaaagaattttgaagagacaatttaaggccaggtggctttaatcaacaagcgacagaaa caccgtgtcaaaccaacccggactttttgtaggtcgttatgcttctttaaaaaaataatgtgggatttgtagaagaatat tggtatggactgctacaataattttgccgaaatgatcgcgatttctgtaattacaagcaacttatttataattccgttat cttgtagatgtcaccagcttacgcgagtgccgaacaaaatttgctcaatgcgctcctgatctcacgaggaaattgacgtc attcgagagcaataactcattgacacaaattacgtcccgttgtcaaggatacacaacaaatactacagtctacccaatgt caaacagggacactttgcaatacatgagacctttgccgcaagttatgattccttttccatctcctccgccttcccctctt cacgtttcgccctcgttaccagcttcaagaggtctcacggccgacaatggatctgtatcgccagcatcaacggggaagaa gcgaaaaatgccatgtacctcatcacgaaaacacaaagcaacggcccaaagttctccgttgtggagaccgtggtagatca gagtaacaaatcaagaaacaaagaatatgtcaaatataaagaaaagaatttcacatggagagtaataaaagaaataggat ataaaggagttattttgaatgaagtgttggattcttggctgaaaatatattttcatacatatcattatcattgaatttgt aaattagaaaacaatataaaatgtgagttatgtacatacaagtgtgaataggtaaaaaagcgaaagacaaaaaagatttc cattagcaagagcagatttataaatgttagcggaaagaaagggatctaaaaatgttagcggaaaaaaagattttattaaa aacgctttcatgatgatatgca |
Protein
Protein ID | aug_v2a.12091.t1 |
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Definition | - |
>aug_v2a.12091.t1 MATANFCKQPTDYVSKILTEKRKAKKPLMEKMRRARINDSLNELKSLILEALNKDASRYSKMEKADVLEMTVQYLRELKR TEKITLQDVTSLRECRTKFAQCAPDLTRKLTSFESNNSLTQITSRCQGYTTNTTVYPMSNRDTLQYMRPLPQVMIPFPSP PPSPLHVSPSLPASRGLTADNGSVSPASTGKKRKMPCTSSRKHKATAQSSPLWRPW* |