Gene
Gene Model ID | aug_v2a.12510 |
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Locus | scaf4971 : 57767 ... 66665 : - |
To GenomeBrowser | scaf4971:57767..66665 |
Genes list of scaffold | scaf4971 |
Manual annotation
Study field | Retrovirus |
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Gene name | Adi-Retrovirus-related 16-2 |
Description | DNA sequence of this gene model showed similarity with that of Adi-Retrovirus-related 16-1. This gene model contains many ank domains and Ion_trans domain. |
mRNA evidence |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
aug_v2a.12510.t1 | gi|390343895|ref|XP_003725987.1| | PREDICTED: transient receptor potential cation channel subfamily A member 1 isoform X1 [Strongylocentrotus purpuratus] | 0.0 |
Transcript
Transcript ID | aug_v2a.12510.t1 |
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Definition | - |
>aug_v2a.12510.t1 ggatggtgtcaattgttacatgccaggacatgctcctactagagggtgggcgcctcaacagaattgtcatcaatgcggtg ttatcggtatgatacgaaaatttaaactttgagatctcgattccaggatacctagaggttacagaaacaactaacaacaa ctacgagttttcaaaaggtctgctttctaatttatactcacagatgaatggtttttttttcctttagaaactgtattaaa gatgtcccgaggaagtcaaacaaatcaaaactgggagaacaacgaggttaaagacaacacaaagagacgagttacatgcc actgcaacccatgcaagccaaggaaagacaaaagacataataaggatttcgatgattctctacagtcaatcggtttcgga gatgaagccttcaaggtttcacaggaacaaccattctttgatgattattcagatgagatcactgaagtaccgactcccgt atcacttcacacccttaagctcttcgaatttgtacgagaagaagaagaggaccttgtcgaagacgaactcgcttctgtaa tagacaggcgccagataaatcatcttagtgaacacggctttgctctaattcacgtcgcagcgcggtataattacggcaga atagtgagctctctactagctcacggagcagacattgacattcgaacacgcgactatcgttggactccccttcatcttgc tgcaaggtatattgcatatacgttttgttaaaaacaattgattaacttttatcgcttagcattgagtacttggtatcagt tggtatgacatggtgacacaggtatttaatttaaacttgaagacaagtaataatgacaatctcaattactttcatgaagg caaatttaattgatattctaggttttctacagctatcgagcgatgaggaaagttgatgaaacttatattttaaaattcta acaaaaatgaactctggaacttgcttttaactgtcttgttttatcttatcagtaaacttgaatttgtactctaatagcga attaattgattcagggaagactgttcgttgtgcagtatttcgtccggtttgtgatttcatttgttcaatttgccatccat gaaaatgtggtgaagccttcagcactttaggcccgatgacgaggtcggtcttcggaccatgggcctgtttctcgaaagtc ccgagacttttcgggcgcatttcgggtgacataattctctttgtatcttcaaaacgaaggcgtactgcggcactagactt tgcagttatttttatttttattccctttacaacatatgaaaagaccagctttacagaataagctggtcgtagttttacga atggcttttcgggcccgaaaagctttggggactttcgagaaatgggccccatacgtcaagggctaaacacgcatctatat tgcaagaaatttttcctccaacaatttaagagaccatgcatcctttgatgatcacagagagaatttttgatgagcctttg cctttataaaatgtgtaattactcccttctgggcacctatcaacgcttatccaggcaaattccctgtcgtaagataaaac aaagttggcgtttttgctcatacctttaattgaagccggtgatactaagtgtggtgaatttgaaaattacggtatggcaa tgattgcaatcagcacccacgtagaatcagccttacgcaatttctttcttagatacaatggtctctccacaattgttgac gtccttttgccacacggtgccgatccaactctaaaaggggaaaacggaattttgccattgcaccttgctgctcgcagagg aaacgaggaaatcgttaaagttcttttagatcgacccgtagttcatgtagacgcagaagatgactctggaaaaacggcct tgcatcttgcctgcagtgaaggtcacagaaaggtctgtgaaattcttttgcatcatggagcggatatcaaggcagtttcg gaggacaaaatgacacctcttcattgtgccgttcaaaattgtcattcagaagtggcgagaatgattttggatcaaggtga gatacgtcgtgatacatcctatgcgttatcaatattaatagtcattcaacgtattagtttgtgtagcatatatccgaaga tataatttagtaaagatgcatgaggtttcctcgtatccgttaagaaagaaaaaaaaacaaaaaacgaagcaaaaaatgca aggaacaattgttataccccactttaagtcaaataagtcaaatgttgaataactatttcaccgactacacataatttgaa gttgtttattggcctttcagaaattggattcgactaatcatgatcagcaggtggaagatgtcgacaaaaatcattacttc tgttggctttaaagtacgtcaccaacagcataagagctttttttccgtcttttcccgtcttttcccatattaacgttata ggctatatgagaaaggctgtccaatcgaaaaagtgcctcctaaaagagtttatatagtgagtcgagctgtttcacatttt aatcagccagcctaatcgttgatacttcgtttcagccaacagagatgttaataccaataaagaggaactcctaatgaaag aggatttacagagcaacacagtcttgcatttggcagcgtggaataatgacgtgaagactgtcgaaatgtgccttaactat ggcgctgatgttaacgttactaaacacaactcgatcactgcactgcacttggccgctactaaaggaaaccttggagtagc ccatttgctgatatcaagaggagctaaggtagatgtgaaagacgaagattccaaaacaccgcttcacaggtatatgtatc ctcttgatttcatatcattttatatatatcatttcgtccataaacagtgcgtgatgtgaagcgcatctttgctttgatgc atgatcgaagcagttaacattataatgaatttgtctcaaaattcttcttcttgaaatgtttggtttcatgtccaaaaggg ctgcgatgttcaaccaaacaaattttattgagtttctactggaaagagaagccaaactggaagcacgagatggcgaaggc cgttctccatttttgaacgctgttgctgctggtcgcttggaggcagctcagcttctcctccacagtggagcagacatcag tgccaccgacctgctcatgaaaacctgtatacatatcgctgtggaaaatgaaaatcttgatgtgctgaccatgcttttgg agaggccctccgggatagacaatttaaacagaggcgattttcttgatagactttccttgcactatgccgcaatggcacaa gatataaaggtatttaagaaatcgatcggattgcttgatcaggaactgtttcattcttacaagtcatttcttctcagaac ttaacaagaactatcataagcgctttcttaaattctctagtttatgtatctgagcgcagacagtgcgttgctgattgcgg agactaaaaatcaaatggaatgtctcgccaaccaacctctttctctcgggaatcggcaagacactgcgggggtggactag tggtcttgccttttcatcagtggatcatgaagtagaaccatgatggctaacctaaacgagagtttcaattgaaagggcaa aatgacacgggtaacatacgaaaacaactagttttggaatattaaaagtggagtgcctggctcactgcctaatgtttttg ttgtcatatagatcttagagctggtgttgtccaaacagaagctccatggccatgatattcctttccaagacgaacagcat aagacgcctctccatcttgcggcagaaatgggctcatccaagaatgttgaagcactcgcaaaatatacgaataaaattaa ttcgcgagacgaaagaggaagaactgctttgcacagcgctgcaagaaagggacagaggtaataatctagatgtttttttc tagatttccgtcttataagagccctaattctcaagtttcttcaatccttttaaaggatcaacaaatgagattctcgtagc ttggagaagatgtcactcgcgtcccctacccttcccttacgcgtccttttggtatgaacttcataaaaacaggttttgaa tttaatcctttttcacagaaaatcttgtctcacccttctcaccatgggagcagatgccaacagtagagacaacaatcatc gtacacccttgatgttggcggctaacaataacaagttgaagtgtgtagcggttctactgaacttcaaggcctctcctgac ctgcaagatgcccaaggcaactccgccttactcttagcttgtgctcaaggacatggagccattgtcaacttgctgatgga ccatggtgcaagtttgacacttaacaacaagcaagagtttgattgcttggaactggcagcaaaagctggatcatctgatg tggctatggctatcgtcaagcacaaaaggttcatctgttaaccgtttacgagtaacaattacaccttcaagccttttttt ttggaaagaaaactaactctcggtccacttcaccttggcaatccattagactcggctctgtgaattttgtccaaatatat tccatctaatcattagcatttagtatattgtgcgtgaccccattgtgctttaattactgctttggtttgttaaagcttta aacgttcacacttttttcttttttcagtctttaatatgagtgctgtttgcaagaagtgaaaaaggccattgcgagcttcc tctcagcatcattcaaattcccagtcaaatccagacggctttcagttcagggaatttaaaaagaacattttaaatataga catagatatttagatcttacaacacgaatcaattgttgtttgacagtttattactttttctcatcaggtggatggaactt gaagactatgagacatcaaacggtcaaactgctatttcactcttaatagaaaacttcccagaggcagctgaagtcgttct ggatcatagtgttcactactcagaacatcttaatccaagcaatccggaatacaccgtcacttacaattttaaacatctgg accacgatccagacgtgaagtcgtcaaacggaagattttcagcagttaagacgatgatcaagcacaagcgtgatcgcctt cttttacatcccctcaccctaaagtttaacgaacgaaagtggctttgtctagggaggttcgtgtttacgattgattttgc tacgtatcttgtgcagatgattctgtttaccatcttcatagttgatgcaagagacattcaggacttcataccgttcaatg aaattatagatgatagatctcctcatccaggtttgagacccggagtgaaaccctcagacattttcaagcatgacaattcc tttgtggaaacaataccaccatttatactgatattttctttcatccacataatcagagatttcttgcaaatctatgtgga tcgttggagttattttaagcatttcacaaattacctggactggactctgtacattactacatctatattcatgatccctt atgttatggcgcctgagaaggttgacgaaatgttcgaaggaacgaatgctccacgcgttgtttggattattggaatagtg gccatcttcgtatgctatacgaacatgatgttgtttctcagaagatatcgtttgtttggaacctacatctcaatgtatgt tgaagtgacccaaacaatcattcaagtattgagcgtctttgtgtttctcgtgctgggatttgcagttgtgttctacattc tatttcaagaacaggtaagaatatgagaactgtactgatgccgtaacacaaatgcaaccaggttttgggcaagttcccac agtcctccgagccgtgcttataacggtctattgtttgtagcattatagagcggttttcaaatgactgtcgaaaaacctaa accaaagcaattactccgaccaatcacaacaggagcagacagcgcgatgaaccaatcacaattcccagcaattacctgta actcgctcgaagcgcgggaaaaatcacgcgtacatggtgcgattggttttggttttgcgtctcactggttgaaaaactgg cgcgagtcttttaagccaatcactaagcgtagcaatcgcaatcacgtaattactttcgacagtcaaaactgctctaatgt gactttgatggaactgatctgacacacaacctcagagaaggcgtcttgcacgttaggcaaaatgccttctgagacgtcag ttcaatgcctgagtgagggtcatcttcatggcaagactgtgtagtcaaggtctgttcggattagcggaaccaacaagcaa aggttcttctcagaaattttctccacccggacgatcagactccgtcaagatatatcactcctacagtagaatttgaaatg tccataaattattatcaactccaaacattatacaattaatactaggagaccacatttccaccatctttctccttctagtc gagattagcactgtgttttatttagttgtttccttggcatatcactcaataaaataagcgcaggtttgaaactgactcat cgtggtaacacatttcgttctaacggaattctatttaacaattagacccgtagcccgtacggggcaatagcccatgaggc gaaggcgaatgggctattgatccgtggctcttgagggcgaagggtctaattgttttagtatcacccaaataatcggacag aaaaaagcaataataaattcagtaaaaaaaatctttatttgggaataaaacgaaataaataggtttacaaaaccggcgag ttcgctcctcgatgactattactaatagacctatagtagcgtagccaatcaaaatgcaggatttgcattagtccactagt tgggtgatactaagtaagtattagaacgcaactatttacaatacaaactattttcttcatgtttctaactccaggttggc ttccatacagttcaccactctattctacgcgtgttggtcatgatgattggagagctggactttggagcgatctttgtgga tactatggacgaaaataacgaaaacaggcagaatcctttgaacccatttgcttctgttggctttttgttcctctacagct gtttgtttctactttcagtagcactgatgaacctgttggtaagaaaatgaagataactgtcatctcctctggtgaaacan nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataatttactgagcgt ctgccgttgtagccatggaaactgagaatgcgtgcttagctcttcaggaataagactgattcagtgtagagtgttcttac tagtatattggacatccgtttgaaaggttgtaacattttattttacgttatcgagtatgccattaattatcagttaatgt aaagcacttctaaaagagaaagtaatttctaatccagatgcaaacagcaatcccttccagcttgtaacggcgaagttctt aaattcttgattctgcttttgatgctgtttcgactctcggagaaactcggagtgctccttagtatgtaggagtcgaacgt gagaccaactgcggacgcttcatcggtgggctaaaggagacacgttcagtgatgcaataacagcgtatcaataataataa tattaataagcatttagaacatttgacctttgacctctgcccttagcagccccccttttttcaattatatccttcgcttg aagaattaaactttttttttaccttactacaaggtattaaggttgaaataccataattcaagcctagttcacacttacaa cgtaagcgaagtaagtgtgaatcaaaacgacaaaaagggaaccggcaagtctcgcttgcgggaggatttcgcgggtgtat tgaaattttcaaggtgacgggagatagacataaaagccacactctgttctttattttgataactatttaataggtttgta ataatcctaaattgtacga |
Protein
Protein ID | aug_v2a.12510.t1 |
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Definition | - |
>aug_v2a.12510.t1 MPGHAPTRGWAPQQNCHQCGVIETVLKMSRGSQTNQNWENNEVKDNTKRRVTCHCNPCKPRKDKRHNKDFDDSLQSIGFG DEAFKVSQEQPFFDDYSDEITEVPTPVSLHTLKLFEFVREEEEDLVEDELASVIDRRQINHLSEHGFALIHVAARYNYGR IVSSLLAHGADIDIRTRDYRWTPLHLAARYNGLSTIVDVLLPHGADPTLKGENGILPLHLAARRGNEEIVKVLLDRPVVH VDAEDDSGKTALHLACSEGHRKVCEILLHHGADIKAVSEDKMTPLHCAVQNCHSEVARMILDQANRDVNTNKEELLMKED LQSNTVLHLAAWNNDVKTVEMCLNYGADVNVTKHNSITALHLAATKGNLGVAHLLISRGAKVDVKDEDSKTPLHRAAMFN QTNFIEFLLEREAKLEARDGEGRSPFLNAVAAGRLEAAQLLLHSGADISATDLLMKTCIHIAVENENLDVLTMLLERPSG IDNLNRGDFLDRLSLHYAAMAQDIKILELVLSKQKLHGHDIPFQDEQHKTPLHLAAEMGSSKNVEALAKYTNKINSRDER GRTALHSAARKGQRKSCLTLLTMGADANSRDNNHRTPLMLAANNNKLKCVAVLLNFKASPDLQDAQGNSALLLACAQGHG AIVNLLMDHGASLTLNNKQEFDCLELAAKAGSSDVAMAIVKHKRWMELEDYETSNGQTAISLLIENFPEAAEVVLDHSVH YSEHLNPSNPEYTVTYNFKHLDHDPDVKSSNGRFSAVKTMIKHKRDRLLLHPLTLKFNERKWLCLGRFVFTIDFATYLVQ MILFTIFIVDARDIQDFIPFNEIIDDRSPHPGLRPGVKPSDIFKHDNSFVETIPPFILIFSFIHIIRDFLQIYVDRWSYF KHFTNYLDWTLYITTSIFMIPYVMAPEKVDEMFEGTNAPRVVWIIGIVAIFVCYTNMMLFLRRYRLFGTYISMYVEVTQT IIQVLSVFVFLVLGFAVVFYILFQEQVGFHTVHHSILRVLVMMIGELDFGAIFVDTMDENNENRQNPLNPFASVGFLFLY SCLFLLSVALMNLLVLRLKYHNSSLVHTYNVSEVSVNQNDKKGTGKSRLREDFAGVLKFSR* |