Gene
Gene Model ID | aug_v2a.12830 |
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Locus | scaf5147 : 70677 ... 75397 : - |
To GenomeBrowser | scaf5147:70677..75397 |
Genes list of scaffold | scaf5147 |
Manual annotation
Study field | Retrovirus |
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Gene name | Adi-Retrovirus-related 20-13 |
Description | DNA sequence of this gene model showed similarity with that of Adi-Retrovirus-related 20-1. This gene model contains Rapsyn_N, TPR_4, TPR_1, PPR, TPR_2 and DUF2977 domains. |
mRNA evidence |
Transcript
Transcript ID | aug_v2a.12830.t1 |
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Definition | - |
>aug_v2a.12830.t1 acatggatggccaagacggaagtggaagaacctgtatcagacaagaaagagatttccacttactggctgactgtcaaaaa gctattgagtatcatgaaaaacaatttaaaatggcaatagaaaccggtgatcgtcacggagaaggaggagcctatgaaaa tctcggtattgctaaccaattactgggcgattatcaaaaagccgttgattatcatgaaaaacatctgaaaattgcaaagg aaattggtgattgggttggaaaaggaaaagcctatggaaatctcggtactgcttacggatcactcggtgactatcggaaa gccattgagtaccatcaaaaacatttgaaaattgcaataaaaagcggtgatcgaagcgaacaaggagaagcgtatggaaa tctcggtgttgcttaccagtcactaggtgactatcaagaagccgttgagtaccatcaaaaagaagtgaaaattacaatcg aaaaaggtgatctgggcagagaaggaagagcctatagaaatctcggcaacgcctacgactcactgggtgactatcgaaaa gccattgagtatcatgaaaaacatttgaaaattgcaatagaaattggtgatcgggacggagaaggaggagcctatgaaaa tctcggtattgcttaccagttaatcggttactttcggaaagccattgactaccttgaaaaacgtttaaaaattgcaataa caatcggtgatcagggcggagaaggaggaacctatggaaatctcggtaatgcctacgactcactgggtgactatggaaaa gccattgagtatcataaaaaacacttgaaaattgcaaaagaagtcggtgatcggagcggagaaggaggagcctatggaaa cctcggaaatgcttaccagtcactgggtgactatcgaaaaaccattaagtatcatgaaaaacatttggcaattgcaatag aaatcggtgatcggggcagagaaggaggagcctgtggaaatctcggtattgcttaccagtcattgggtgacaatcgaaaa gccattgagtatcatgaaaaacacttgaaatatgcaaaagaaataagtgatcaccacggagaaggactagcgtatggaaa tcttggtaatgcttaccagtcactgggtgactatcgaaaagcaatcgagtaccttgaaaagcatttgaatattgcaataa aaatcggtgataggtgcggggaaggaaccacatatggaaatctcggaaatgtttactggtcactgggtgaccatcgagaa gccatcgagcactttgaatgccatttaaaaattgcgatagaaatcggtgatcagagaggagaagaagcagcctatggaaa tcttggtagtgcttaccggtctttgggtgactatcgaaaagccattgagtatcatgaaaaacacttaaaaattgcagttg aaataagtgatcggggcggggaaggaggagcctatggaaatctggcgaatgcttaccagtcactgggtgactatcgaaat gccatcgagtatcatgaaaaggctttgaaaattggagtagaaatcggtgatcgtggcggagaagaagaagcctataaaaa tctcggtagtgcttaccagtcattgggtgactatttaaaagccattgagtattatgaaaaatgcatgaatattgcaaaag aaatcggtgatcggtgcgaagaaggaacaacatatggaaatcttggtaacgcttaccgttcactgggggactatctaaaa gctattgagtaccttgaaaaacatttgaaaattgccatagatatcggcgatcggggtggcgaaggactagccaatggaaa tctcagtattacatactgtacactaggtgactatcgaaaagccattgagtaccttgaaaaacatttgaaaattgctatag aaatcggtgatcagggtggagaaggaacaacatatggaaatctcggaagtgcttacaagtcactgggtgactatcgaaaa gccattgaatatcatgagaaacgtttaaaaattgcaataaaaatcagcgatctgggcggagaaggaagagcctatggaaa tctcggaaacgcttacgagtcactgggtgactatcgaaatgccatcaagtatcattaaaaagctttgaaaattggagtag aaatcggtgatcatgacagagaagaagaagcctataaaaatctcggtagtgcttaccggtcactgggtgaatgttcaaaa gccattgagtattatgaaaaatgtatgaaaattgctatagaaatcggtgatcagggtggagaaggaacaacatatgaaaa tctcggaaacacttacgagtcactgggtgactatcgaaaagccattgagtatcatcaaaaacgtttaaaaattgctatag aaatcggtgatcagggtggagaaggaaaagcctatggagatcttggaaacgcttacgagtcactgggtgactatcgaaaa gccattgaatatcatgagaaacgtttgaaaattgccatagaaattggtgatcgggaaagagaaggactagcctatggaaa tcttggtactgattactacttactttgcgactatggaaaatccattgagtatcatggaaaatctttgaaaattgcaatag aaatcagtgatcaggacacagaagtacgagcctatggatatctcggaaatgcttactggtcattaggtgactatcgaaaa gctattgagtatcatcaaaaacgtttaaaaagtgctatagaaatcggtgatcagggcggacaaggaagcgcctatggaaa tcttggtattgcttacgggtcactgggtgactatcgaaaagtaattgagtaccttgaaaaagatttgaaaatcgcaatag aaatcggtgatcgtgatggagaaggaggagcctatggtaatcttgggaatgtttaccggtcattgggtgactatcgaaaa gccattgaatactttgaaagacatttaaaaattgccatagaaaacggtgatcatagaggagaaggagcagcctatggaaa tctgggtagtgcttaccggtcattgggtgactatcgaaaagcaattgagtatcatgaaaaacatttgaaaaatacaatag aaatcggtgatcggggtggagaaagtgcatcttatcacaacattggaaacgtatacttttctcttggacaattcgtgaac gcggtggataactttgtttcatctgtgaatacatttaattatttgagatctctcttgaaaagtaaagataattggaaaat gacgtatcgtgagctgtacgagaaaacttacaccgctttatggaagtcattgcttcgaattggaaagatcgatgaggctt tgttcgcggctgaacaaggacgagcgcagactttgtccgacaatttgttgattcaatttaaactacctgagtccgtaaca gctgcaacatttgacaccgaaaggacaatatctcgcctctcgagagagattattacaccaattatttttctaggaattga aagacttacgatcaacatctggtttctgagcagaagaaacaaagtagtatttcgacaagggaagctagaaggtgatagaa cagaggaagatcccatacacaccttactgcaatcatcgttggaaaaaatcggagctgaagataccgtaagatgtgaagat cgcacacttgacaatgattgcccgtttagcatagaagcgtggggcaaaggagttggaaaacctacgttgatgcctttaga taacccctttaagccattttatgacgcgattattgatccaattattgacatgcttggacctcaagacgacgagttggtga ttgttcctgatggtgcgctgtgccttaccccatgggccgcagttattgaatcgattaggatccgagctgttccatctctt acaagttataaattgatcttaagtgtacccgaaggacatcacaagaggagaggggcgcttttggttggaaatccgtgctt aaaccagttgaagaaaccggaaccaggcttaccatgtgctcaagaggaagtggaaatgattgcatcaattctcaacacaa gagccctagtagggagacaggcgacaaaaggtgaagtgatgaaacggatgtcttcagttggtttaattcatattgctgcc cacggaaacaagcacactggcgaaattgccttgtccccaaaccctggatggacttccaacttccctcaaaagaaagatta cattttgaaaatgtccgacgtgcaagcggtcaatcttcgagctcgtcttgtggtcttaagttgctgtcacagtggacgag gcagaatcttgaagggtgagggtgtggttggtatcgcacgtgccttcttggcagctggtgctcgttctgtgttggtcacc ctgtgggcaatagatgacgaggctaccatggtgtttatgaaaagtttctacaaacatttaaaggaaggaaaaaccgccag tgcttctgttcagcaatcgatgaaatcccttcgtcaatctgacgagtattctgagatgagatactgggctccgttccaac ttatcggagatgacgtcaagattgaattcggggcggatgatgacgtcaaaaaatgaggataataagaagttctttttcat tcttttagcagcataataaccagcgtaataggattcgcggactgtcttacttgtcagtcatgtcacgtaatgggacggtt a |
Protein
Protein ID | aug_v2a.12830.t1 |
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Definition | - |
>aug_v2a.12830.t1 MDGQDGSGRTCIRQERDFHLLADCQKAIEYHEKQFKMAIETGDRHGEGGAYENLGIANQLLGDYQKAVDYHEKHLKIAKE IGDWVGKGKAYGNLGTAYGSLGDYRKAIEYHQKHLKIAIKSGDRSEQGEAYGNLGVAYQSLGDYQEAVEYHQKEVKITIE KGDLGREGRAYRNLGNAYDSLGDYRKAIEYHEKHLKIAIEIGDRDGEGGAYENLGIAYQLIGYFRKAIDYLEKRLKIAIT IGDQGGEGGTYGNLGNAYDSLGDYGKAIEYHKKHLKIAKEVGDRSGEGGAYGNLGNAYQSLGDYRKTIKYHEKHLAIAIE IGDRGREGGACGNLGIAYQSLGDNRKAIEYHEKHLKYAKEISDHHGEGLAYGNLGNAYQSLGDYRKAIEYLEKHLNIAIK IGDRCGEGTTYGNLGNVYWSLGDHREAIEHFECHLKIAIEIGDQRGEEAAYGNLGSAYRSLGDYRKAIEYHEKHLKIAVE ISDRGGEGGAYGNLANAYQSLGDYRNAIEYHEKALKIGVEIGDRGGEEEAYKNLGSAYQSLGDYLKAIEYYEKCMNIAKE IGDRCEEGTTYGNLGNAYRSLGDYLKAIEYLEKHLKIAIDIGDRGGEGLANGNLSITYCTLGDYRKAIEYLEKHLKIAIE IGDQGGEGTTYGNLGSAYKSLGDYRKAIEYHEKRLKIAIKISDLGGEGRAYGNLGNAYESLEIGDQGGEGTTYENLGNTY ESLGDYRKAIEYHQKRLKIAIEIGDQGGEGKAYGDLGNAYESLGDYRKAIEYHEKRLKIAIEIGDREREGLAYGNLGTDY YLLCDYGKSIEYHGKSLKIAIEISDQDTEVRAYGYLGNAYWSLGDYRKAIEYHQKRLKSAIEIGDQGGQGSAYGNLGIAY GSLGDYRKVIEYLEKDLKIAIEIGDRDGEGGAYGNLGNVYRSLGDYRKAIEYFERHLKIAIENGDHRGEGAAYGNLGSAY RSLGDYRKAIEYHEKHLKNTIEIGDRGGESASYHNIGNVYFSLGQFVNAVDNFVSSVNTFNYLRSLLKSKDNWKMTYREL YEKTYTALWKSLLRIGKIDEALFAAEQGRAQTLSDNLLIQFKLPESVTAATFDTERTISRLSREIITPIIFLGIERLTIN IWFLSRRNKVVFRQGKLEGDRTEEDPIHTLLQSSLEKIGAEDTVRCEDRTLDNDCPFSIEAWGKGVGKPTLMPLDNPFKP FYDAIIDPIIDMLGPQDDELVIVPDGALCLTPWAAVIESIRIRAVPSLTSYKLILSVPEGHHKRRGALLVGNPCLNQLKK PEPGLPCAQEEVEMIASILNTRALVGRQATKGEVMKRMSSVGLIHIAAHGNKHTGEIALSPNPGWTSNFPQKKDYILKMS DVQAVNLRARLVVLSCCHSGRGRILKGEGVVGIARAFLAAGARSVLVTLWAIDDEATMVFMKSFYKHLKEGKTASASVQQ SMKSLRQSDEYSEMRYWAPFQLIGDDVKIEFGADDDVKK* |