Gene
Gene Model ID | aug_v2a.13777 |
---|---|
Locus | scaf5668 : 82306 ... 88441 : + |
To GenomeBrowser | scaf5668:82306..88441 |
Genes list of scaffold | scaf5668 |
Manual annotation
Study field | Collagen |
---|---|
Gene name | Collagen Domain Containing Protein18 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
aug_v2a.13777.t1 | gi|501958499|ref|WP_012677219.1| | cell surface protein [Streptococcus equi] | 4.0e-35 |
aug_v2a.13777.t1 | gi|752396997|ref|XP_011221135.1| | PREDICTED: macrophage receptor MARCO isoform X1 [Ailuropoda melanoleuca] | 4.0e-35 |
Transcript
Transcript ID | aug_v2a.13777.t1 |
---|---|
Definition | - |
>aug_v2a.13777.t1 gtcgcaaccattcttggcttcattctagaaggttcatagtacaggaaacacatagtgaggcagaggtttgaagcgactga gatgtcagttcaaaagcaaaatttgccttcgttctcgtcttttgtttctattttatgcattgttttgtgctgtgctgggt ttttgcgagttgagttagaattaggcaagtacaactcgcgaataatgacgcttgaaacaagagaggaatcaaaacaagag ggcagcgatccgggacacatactttctccaaactatggtcattctataggtgagtcgcttgaacatagctcatagctccc gcagctgctttagtcttttgggactggagaggaagacttcacaggaaatccaaccagatttgtttctttcaaatttcaaa catgtgtctgtcttggatccccacactgtattcgtgtgttgcctataaaacgatcaaattgcagtgaaaatagttctttc gtttgcgtttatggaattttagaaggattattgttacaacttttagactagaaaatgtcagctatttatagttccctcat ctcccagctaccaatttctgataggaagagactccatttcccctgtagctgcttttagaaattcgaaacttaaacggatc aaattcttccagttgagaactggtaaatccgtcacaaagacacagaaattagcggccttggtttgggtatcgtacttcgg ttgcccgtaagtttcaaactgtaagatttcgggtgggatttcgtcctcaaaattgaaaaaaaaaaataaacagaaaaaat aaacttgaaaatgccgtgcttgagacaagcccatgcttgatcgttgatgctctttggcttataacgcattcatttcactc ttaggaggagtcgggtagggaaacagaatatcatgcactagattacgggggtacgaaaaaactgaattacttgtatttac ttcttcgctccaagaaatatgccgatagtctcctcttctcattcatatagtatatacccacaaaaattacaaactggttc attcatcgtgaattattttgtaaaaagaagaagatgaagatgaattcccaacgaaatattacaaccagaggcccgaataa tcctcgcagcagtttagccagttttggtcagttattttattttagtttacgtatctttagatgcattcgtccggggaagg tcattttgtagagaagctttcagctcttcaaagaggatcaatgtacgagcaaagccacctctccagccctcagtcctcag ccctcagccctcagccctcagcccccctcctcccaaaaaaattctcttggtcaaacacgcgaacagtcttttcttgtggg ttaattcagtctgagatgttcagtcactgaaggcgatcagcatcttccttgagcgcatatcgaggtgaagctgttacgtg aggcaatgcttggcattgtttttgtcggctataaataaaatagccacctcatttatttttagtttttctgggctcaaggc tagagacttgttgactcgagatgaccggttaatttgagcttagaacattatcctaatctacttagtttttgtcaaatgtg atcttaaatccagtttcctatcttatatctttcaactgcttatggacttgatttgatatttcatatttacctctttccta tggtcctctcttatgacctggaaacgagacaggtcggtgacaaatatatcaattaccaatgtcgtcccattttatttcac caaaatttttgtcggtgacgataacaacgaaaacaatctttattattacaccttttttacaattaacgttacggtttttt ttttagctataaaaggggagaagaaatgataagcttttacaatttaaaggtgtctggggctaaataaactaaagttttca agttagccgctagccaaggggtaattatacaaactgtagggattacaaaaacgacagcaacaacatctaaaaactacgcc aattataagcacaaataaagccaatcattggcaaaaaagtttactctttaaatcgaatttttagaagaaattcttttact ttatcggaaaaaaatagtttgagatgttttaagctagttggaaaatcttgtcaaaggtcaccataattaaagacaattga ccttctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaataatcgatagcaatta gtttaacgtggagttaaactccacgaaaatgatttaatgttcaacatatgaacttcatgtattcttagaaaaactccatt gttcgttataatttgtctcttaaacaaccttcgtgtcttgtactatcacagagtctcaaggttacaacaacaggaaaagg cgtcatgtagatgcgatcgagaatataacggaaactgacaaagcggctttcatgaaaaaggcacttcaattttgccaatc ggcaatttgtttgccagggccgaagggcgaccccggttcacctggaccgggtggacaaaaaggatcccggggacgaagag gacatattgggaagcctggtgtaatgggttcaccagggaaaagcggcaaacaaggcattgtgggtccaatcggattgaaa ggagaacctgggcaaaagggaaaaaaaggcgaattaggatcgaaaggcttgcgaggggatgttggctcaaagggacacaa gggtgaattaggatcccaaggcatgcgaggacccaaaggcgaacgaggaacttctggtccagaggggccaaaaggcgaat cggggacacaaggaatgcagggtccgaaaggcgagctaggactaaaaggcgaacgaggaacggctggcgcaaagggcgca aaaggcgaaatgggaacacaaggtatccagggactcagaggccaggaaggaccaccaggatttcaaggaataaaaggcta ccgaggaatggctggcccaaagggcgcaaaaggcgaaatgggaacacaaggtattcagggacccgaaggctcgcaaggaa taacaggtcaaaaaggacaaaaaggcctattgggacccaaaggcagcaagggaacaaaaggcgagcgaggcctaaaggga caaagagatacctccagagcagacggtaggcggtgatcaaaaggcggagctggtagaaataatttgcctcctcattttga gatgttttgcattttggacctggcgtaaagctaacgccatttcaaggaatgataataataactatcactccttaagtctc atagttgactaaaccaagctcaaggtctcttcttctttggaagaatgcaaactaaattaaatcatgtcaaataggcaact ttcagaaataccataacagtctttgtttgtcctccaaaattttgcatagacattgtttccgttttctcctaaaacttaca aaggtcccaaaagaaaataaatacaacgcttctgcaaacctttggaggacaaacaaagaggattatgatattttttaaag tggcctattaagcaaatgttagtttttggttagagtggaaaacaagagtaccatgaacaaatatcttggagcagagtatt actctggcgatggaaagcaagcaagatttctcgactgatttgaaggagaatttgaaggcttgattgattcaaaggttaat gatgtttaaaaaaactcacatgtcacaccgtgaaaactgaaaattataaaaattgaacttacaagggtgaaaaatctcgc gatatcgatacgacattgcattcattccaaagtcgaggagcccacagtatgccagttgagccagcaaataaacaaatagt tagattgctgttacacagtgtactcaaaaattcgtaatatttaagtgttaagttaagtaaactgtggtgaccatctaaca aaagaaattacaaagtaagcgggctgcactaagacattgtacttattcttccacaggactgtttgtgagcgcaacgagtt cgtgctcaggtctattagtgacccgatcaaggtccagtggcattatattttcaaacagaaatggcgaatactccaacgac atggattgctcatggactttgtccgcgaacacaaatataagattggtattttttagatttcaaaccgaaggtagcctcga caaggttcgcgtatataatggcatatcttcttcctcgtcccttttgggtgagtttgatggaagttctctgccaagtgtca ttgcaagttccaacaacgcgcttcacattcgatttactaccgacagttccgttacaaaaactggatttgccgccagctat catggtaagattgtgcttcattttttttcaataaatttactcattttcttagtctggttgggggttggtcagtgttatga aggtaaatggtgggggaagggggactgacggtagaaggtgttgtaagcactaggtcaaagtaaaagattcttcaaacatc atagaacagttggttttgttttcccgagattcctgatatttcccgagacgaagtcgagggaaacattaggactcgaggga aaacgaaactaactagtttcccgagggaccatacattaagtgctttgtcattgcgttagacgaagtggaacgcaaaccta attttgtggctttcgagagctggttttcctgtgcacggttccatatgctgaaaaaaattcacattcctgtaaggacacca aaatggccaccccgctggagtcttgcatgcaggggcatgtcacggccagtagtctggtaccgttactaagacatgtgacg aatagaccattttcgaattctcacggctagactggatctagcatgaaatggatgtatgttagcaggccatgtgagcgtct ttgcagctgatgtttggtctttctttctatgttttcattattccttgctctatattttcctccatgtttcttttcactgt aagaacctcctcgaccgctccacgtaatataacgtggaacgcactttataatctgtgattactactatatttagactttc ccttaaacaatcatatagcaataacaaaaaacaagttgacgtgagcacgtgttgaggataacgtcattttaaatttagtc atgtactgctcacttgcgacgcgcggacaacagctgctcaatttaatttcatttgaatttgatcagggcacgtgaccaag aatcaaccaatcacaatgctcgttttgctgagtcaaagaacactatttatctttgctatgcgcgtatgataatgttgtta tcattaaaatcgtatgcaacagagtttacatttacgtagtactaaagtaagataattgtgttttgatcatgattcttttg ttgttgttttttttgtttcatctagttgctaattcaatccgtcttgtgaattcggattcaagcaataagttatccggcag agttgaactctaccacctgggttcttggggaacaatatgcgatgacgactgggatacaaacgatgctcaagtagtatgcc gacagctcggttttccacccgcttctcgagccattggaagcgccagtttcggcgagggatccggttatatccttttagat gacgtagactgcaatggaggagaagcatttatcgagaactgcatttccagaggattccgacaacataattgcggtcatag tgaagatgccagtgtagagtgttcctccacgataccttagcctatctgccatagggttcccatctgttcgttttcattca tatatctttcgtagggcgcttttccgtagagtttcagtattgtttttcgtggggggcggggggtagtcacactgcgtcct cgaaaggtgatactgaaggaactttctttgggatacgccaaagaagatttagtttcaatacgtatctggaaataaggttg cctacagattaaagacttaaaaaagatgaaattttaagtggaaaacgtctgtttggttattactgaccgccatatacaat gggaaacacatatcaccagtgatttctgtatgcgagagaacatatgtttcatcagcaccaaagatgagacgagaaccaaa gatctagagagggtcggtgatgagcatctttaaattaaaaaaagccttttttttgt |
Protein
Protein ID | aug_v2a.13777.t1 |
---|---|
Definition | - |
>aug_v2a.13777.t1 MSVQKQNLPSFSSFVSILCIVLCCAGFLRVELELGKYNSRIMTLETREESKQEGSDPGHILSPNYGHSIESQGYNNRKRR HVDAIENITETDKAAFMKKALQFCQSAICLPGPKGDPGSPGPGGQKGSRGRRGHIGKPGVMGSPGKSGKQGIVGPIGLKG EPGQKGKKGELGSKGLRGDVGSKGHKGELGSQGMRGPKGERGTSGPEGPKGESGTQGMQGPKGELGLKGERGTAGAKGAK GEMGTQGIQGLRGQEGPPGFQGIKGYRGMAGPKGAKGEMGTQGIQGPEGSQGITGQKGQKGLLGPKGSKGTKGERGLKGQ RDTSRADGLFVSATSSCSGLLVTRSRSSGIIFSNRNGEYSNDMDCSWTLSANTNIRLVFFRFQTEGSLDKVRVYNGISSS SSLLGEFDGSSLPSVIASSNNALHIRFTTDSSVTKTGFAASYHVANSIRLVNSDSSNKLSGRVELYHLGSWGTICDDDWD TNDAQVVCRQLGFPPASRAIGSASFGEGSGYILLDDVDCNGGEAFIENCISRGFRQHNCGHSEDASVECSSTIP* |