aug_v2a.14147: Genome browser

Gene

Gene Model ID	aug_v2a.14147
Locus	scaf5877 : 1837 ... 4175 : -
To GenomeBrowser	scaf5877:1837..4175
Genes list of scaffold	scaf5877

Manual annotation

Study field	Cytoskelton
Gene name	alpha or beta tubulin like protein5

Study field	Flagellum
Gene name	Adi-alpha-tubulin3
Description	Named thus because a bi-directional best hit result was obtained by BLASTP searches. See Homo sapience alpha tubulin (AAA91576). This is an axoneme related protein.
mRNA evidence

Annotation by Blast2GO

Annotation	GO
low quality protein: tubulin alpha-1c chain-like	GO:0003924 GO:0005200 GO:0005525 GO:0005634 GO:0005881 GO:0007017 GO:0008152 GO:0031982 GO:0051258

Blast Hit to nr / sp

query	Subject ID	Subject Name	evalue
aug_v2a.14147.t1	gi\|507709417\|ref\|XP_004646666.1\|	PREDICTED: tubulin alpha-1C chain [Octodon degus]	0.0

Transcript

Transcript ID	aug_v2a.14147.t1
Definition	-
>aug_v2a.14147.t1 cagcgagaatgcatttctttgcacattggacaagcaggagttcaaatcggcagcgcttgttgggaactatattgcatcga acatgggatcatggcaaacgggcgaattgatggaggaggacactgtgaagacgattctttcaatacttttttcaacgagt cgatggccggtaaatatgttcctcggtcaatttttgttgacttggaaccaaccgttattggtaagtcattgtctcgaatt cctttgaccgcttacacatataactcacccagttgaaactactcggaagtgtcaaactatacaaaagatcagtagcgact aaacaactcacgactggttttatgcaggaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncggttgatataaaattggattttggcttttcaaaccttccactg gtgattgtcagccattcaagacagcgtcatgtttcatgttggtctaatttacggatgtgggcaacaacttattgaattgt tattttccctctgctgagatggagggcttgttttatgctgggaagggtggtttgttttcattttcatttgcattcgtaaa ttgcacaacacagaaatggccctgcttcgtctggatgcctgaactactatcctatttatgttgcattagccgttttaaat atgagactccttgaagatcgctttgacaaaacagcagtggctggcctttgggtagactaccaaactatcaactgggtcag ctaggactgaatccagttgacttgttttctagtctacccaagggatttgtcattttctacaggcagatcagtgttacggc cttcaaggatttctcataacccattcttttggtggagggactggatctggattttcatccattcttcttgaacgcctggc agctgattatggtaagaaatccaaactggaattttgtgtttatcctgctccaagagtctctactgctgtggtagaaccat ataacgctgtacttacaactcattcaaccctggaacatgcagactgttcgtttttaatggacaacgaagccatttacgat ctctgtcacaagaaccttgatgtggaacgtcccacgtacacaaatctcaaccgggttattagtcaggttgtgtcctctat tactgcttctcttcgttttgacggcgccttgaatgtggatttgacagaatttcagaccaatcttgtgccgtatcccagga ttcactatccactggtatcttactcgcctttgatctcagcggttaaagctcatctcgaacaactcacagttgccgagata acaaatcgttgctttgatcccgcaaatcaaatggtaaaatgcgatccgcgacacgggcaatacatggcttgctgtatgct ctacaggggtgacgttgttcctaaagacgttaactcagcaatttgcagcataaaaaccaaacgtagcgttcagtttgttg aatggtgtccaacagggtttaaggtcggcatcagttatcagcccccgactgttgtccctggcagcgatcaagccaagcta cttcgatctctttgtatgctcagcaatagtactgctatctctgaggcatgggcacagttggatcacaagtttgacttgat gttcgctaaacgagcgtttgttcattggtttgttggggagggaatggaggaaggcgagttcattgaagcgcgtgaggatc ttgcagctttggaaaaggattacgaagaagttgaagctgctacaactgcaagcgaggaggacgaatactaaagaaaaaga ttaaatcggaacaaggtca

Transcript ID

aug_v2a.14147.t1

Definition

>aug_v2a.14147.t1
cagcgagaatgcatttctttgcacattggacaagcaggagttcaaatcggcagcgcttgttgggaactatattgcatcga
acatgggatcatggcaaacgggcgaattgatggaggaggacactgtgaagacgattctttcaatacttttttcaacgagt
cgatggccggtaaatatgttcctcggtcaatttttgttgacttggaaccaaccgttattggtaagtcattgtctcgaatt
cctttgaccgcttacacatataactcacccagttgaaactactcggaagtgtcaaactatacaaaagatcagtagcgact
aaacaactcacgactggttttatgcaggaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncggttgatataaaattggattttggcttttcaaaccttccactg
gtgattgtcagccattcaagacagcgtcatgtttcatgttggtctaatttacggatgtgggcaacaacttattgaattgt
tattttccctctgctgagatggagggcttgttttatgctgggaagggtggtttgttttcattttcatttgcattcgtaaa
ttgcacaacacagaaatggccctgcttcgtctggatgcctgaactactatcctatttatgttgcattagccgttttaaat
atgagactccttgaagatcgctttgacaaaacagcagtggctggcctttgggtagactaccaaactatcaactgggtcag
ctaggactgaatccagttgacttgttttctagtctacccaagggatttgtcattttctacaggcagatcagtgttacggc
cttcaaggatttctcataacccattcttttggtggagggactggatctggattttcatccattcttcttgaacgcctggc
agctgattatggtaagaaatccaaactggaattttgtgtttatcctgctccaagagtctctactgctgtggtagaaccat
ataacgctgtacttacaactcattcaaccctggaacatgcagactgttcgtttttaatggacaacgaagccatttacgat
ctctgtcacaagaaccttgatgtggaacgtcccacgtacacaaatctcaaccgggttattagtcaggttgtgtcctctat
tactgcttctcttcgttttgacggcgccttgaatgtggatttgacagaatttcagaccaatcttgtgccgtatcccagga
ttcactatccactggtatcttactcgcctttgatctcagcggttaaagctcatctcgaacaactcacagttgccgagata
acaaatcgttgctttgatcccgcaaatcaaatggtaaaatgcgatccgcgacacgggcaatacatggcttgctgtatgct
ctacaggggtgacgttgttcctaaagacgttaactcagcaatttgcagcataaaaaccaaacgtagcgttcagtttgttg
aatggtgtccaacagggtttaaggtcggcatcagttatcagcccccgactgttgtccctggcagcgatcaagccaagcta
cttcgatctctttgtatgctcagcaatagtactgctatctctgaggcatgggcacagttggatcacaagtttgacttgat
gttcgctaaacgagcgtttgttcattggtttgttggggagggaatggaggaaggcgagttcattgaagcgcgtgaggatc
ttgcagctttggaaaaggattacgaagaagttgaagctgctacaactgcaagcgaggaggacgaatactaaagaaaaaga
ttaaatcggaacaaggtca

Protein

Protein ID	aug_v2a.14147.t1
Definition	-
>aug_v2a.14147.t1 MANGRIDGGGHCEDDSFNTFFNESMAGKYVPRSIFVDLEPTVIDQCYGLQGFLITHSFGGGTGSGFSSILLERLAADYGK KSKLEFCVYPAPRVSTAVVEPYNAVLTTHSTLEHADCSFLMDNEAIYDLCHKNLDVERPTYTNLNRVISQVVSSITASLR FDGALNVDLTEFQTNLVPYPRIHYPLVSYSPLISAVKAHLEQLTVAEITNRCFDPANQMVKCDPRHGQYMACCMLYRGDV VPKDVNSAICSIKTKRSVQFVEWCPTGFKVGISYQPPTVVPGSDQAKLLRSLCMLSNSTAISEAWAQLDHKFDLMFAKRA FVHWFVGEGMEEGEFIEAREDLAALEKDYEEVEAATTASEEDEY*

Protein ID

aug_v2a.14147.t1

Definition

>aug_v2a.14147.t1
MANGRIDGGGHCEDDSFNTFFNESMAGKYVPRSIFVDLEPTVIDQCYGLQGFLITHSFGGGTGSGFSSILLERLAADYGK
KSKLEFCVYPAPRVSTAVVEPYNAVLTTHSTLEHADCSFLMDNEAIYDLCHKNLDVERPTYTNLNRVISQVVSSITASLR
FDGALNVDLTEFQTNLVPYPRIHYPLVSYSPLISAVKAHLEQLTVAEITNRCFDPANQMVKCDPRHGQYMACCMLYRGDV
VPKDVNSAICSIKTKRSVQFVEWCPTGFKVGISYQPPTVVPGSDQAKLLRSLCMLSNSTAISEAWAQLDHKFDLMFAKRA
FVHWFVGEGMEEGEFIEAREDLAALEKDYEEVEAATTASEEDEY*

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OIST Marine Genomics Unit since 2008