Gene
Gene Model ID | aug_v2a.15732 |
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Locus | scaf6936 : 1 ... 11835 : - |
To GenomeBrowser | scaf6936:1..11835 |
Genes list of scaffold | scaf6936 |
Manual annotation
Study field | Retrovirus |
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Gene name | Adi-Retrovirus-related 42-2 |
Description | DNA sequence of this gene model showed similarity with that of Adi-Retrovirus-related 42-1. This gene model contains MADF_DNA_bdg domain. |
mRNA evidence |
Transcript
Transcript ID | aug_v2a.15732.t1 |
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Definition | - |
>aug_v2a.15732.t1 cacagggttgcaccatacttcaattattggtatgcgcgaacgaaaggtacaagaagttctcctagggaaagatgatatat taaagcttgacaaggcaatggacattgccagaacaaaggaagccacagtcaacgacatgaaatccctagagcaacaaggt gcatcagcccgtccccatgacactaacataggtgctgtcaagcagaattccaaccacaagtgtggaaaatgtggcctcag ccatggaaaaaaatgcctagccaaaggtacaaggtacagaaaatgtaaccagtggaaccactgggaacaggtgtgcagga ataaacaaatacaggattggagagccaagccttaaaatagaaagcaacctgaaggttggataccacagaaaaaaacaaag tcaaaacaacgtgaatgctgtttgagagacaaattccgactctgatgagttgtgttttgagacaattcacattgacactt ccaatgttaatttgttaagagatgaggcctttgcaaaaatctgagtagaactgccaaatattgatcatccaaaccctgtg ctcaaagtgaaagaagatactggcgcgcaaggaaatattctgcctttgcgaatttataacaacatgtttccagatagtgt ggatgagaatggcctcccaacaggcactgcacccagccagaccaaaatgactgcatacaatggtacccaaatatcccagc atggagtatgttctatcaagtgttcctttgatgacaaggaaactgatgcaatgttttatgttgctgatgttgagggccct gccatttgtggtcttgccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncccgtcatggttactgttctgtagtgctcgatgaagaatcctc tcaccttacgactttcaacagcccgtttggtagattcagattcactcgtcttccttttggactgtgtgtgagtcaggata tctttcaacagaaaatggactttatccttgagaaatgcccaggaacagttggcattgctgacaacattgcagttcatggg actactgaggaagaacatgattccaatttgtacaacctgatgctggttgtacaggaacacggacttgtcttcaacctaga gaaatgcatgattaaagaaagataacatcctttggaatgttattcgatgctgaaggggtgcatcctgacctagaaaaagt agacgccatcagagccattcagataccacaggatgcccaagaactccagtctttccttggaatagcaacatacatggctc cttttattccaaatctctctgctatgtctgagcctctccgcaacttgctgaagaagggtactgatttccactggtctcct tcccacagtacagcttttgagaaaatcaagcagtcgctctgccgacaagtctcgcttatgtattttgatcctagaaagga aactgttgtacaagtcgatgcctcacttagaggacttggaagtgcactagtgcaggaaggcaaagttgttgcttttgcgt ccagagcactcacggacactgagaaacgatatgcaaatattgagcgggagatgcttgctgatgttgttgcttgtgaaaag tttcactcgtacttgtttggcaagaggttcctggtagagtcggatcacaaacccctcgaaatgattcatttgaagattct cacaggtgcccccccacaactccagagaatgttgctcagaatacaaggatatgatctggagatcaagtacaaacctggca cagaaatgcttcttgctgacccaatatcaagactcagccctctgccgagtaaggagccattggacctacacaaagtgtgc ctcgtgcggttctctgacgcgaagttgaatgctctgaaggaagacacctcatctgatcctgaactcacagctctatgaga aatcatctactccagctggcctgaaaagcggaaacaggttccagtctcattgagaaagtattgggcctatcgggatgagc tgtctattgaaaatggcctagtcctgaagggagaaagagtgattgttccagagtcccaaaaagctgaaatcctagagaag atacacctggctcaccaaggtgtcgagaagtgccagctgcgagcaaggtcatgtgtattttggccaaatattaacaagga cattgaggctagagtacaaaaatgtaaagtctgccaagaagaccaaaacacacaagccaaggaaacactggaaccgcatg aagtacctactagaccatggcaaattataggaattgatctgttcacgtggaatggggatgaatatctactcatgtgtgac tatcactcgaagtttcccgttatgaagaaaataccaagtagcaatccacaggacaaacagtcgttaaccttacaaagtgc gtgatgtcagaacagggtgtacctgaagtcataatttcagacaaaggtccacaatatgattgtcaaagctacaagcagtt ctcccaagagtggggtttcaaacacataacgtccagtcccagatacccgcagtccaatgggttttttgagcgacaagtcc agactgtcaaaaacaccttagacaaggctaagaagtctggacaagaccctcaatgtcaatgctctgtcttagatctaccc ctcttgattctcagcttccatcccctgccgagttgctgtatcagcgtaagcttcaagcgaaccttcctatcagagttgga aatcaaataccagacagggataatattacccagcgcctgacagaacgccagcagctcatgaagcactactacgataagaa agcacatgatctcagtcccctggcgacaggacaacccgtacacatacaggatcaagtcacaaagaagtggttcccgggaa ctgtaaattgtataagacctgaaccccgatcatataaggtcaaaactcattctggttcaatccttcgccgcaacaggcgc caccttcgcccagcagacacagggcaagttgtggttcactctgaagacgagcctgatgggtctgatgagcctgctgaagc atctcataatgttcaggagtctgctaagccgtctcaaaccataatgcctagtcctgcaagagatgtcggtgtcacttctg gaccaccctgtgctagtccaaaccccggaacctatcggaccagaagtgggcgtgcggtgatcagacctgcccgctttgcg gaatagtgcaatttaagtttttgataccagctcatgtttacttgtgcttacttttctgcagtttttgctttaccatttta ggatgtagtgcagggacccttttttatatatatcgtatgctaccacagcttatgttggggctttgcaaggactttccatt ctgtggaactatagatgttaagtttaggaactgatgacctctagagacctccagttactgttgtcttatataagtattta tataagaggagggatgtcatagtatgcctcgctttgcaccaagagactgggaactagttgggttagctgtgtgtctgcca tcttgtaacatggagttagtcaatcctgagtattataagttgtgttcctctgcgttcctgtttattacgtcgatgatatc tttacagccaggtgatctggtgacgtcatgaagaggcctcggccaaaaattttagcgccgtatcccacaaccgcgcgcgg cctgaggtgttgttttcgaatttcaaacatggcggtccgtggcggtagaaagaaagtgttcatttatatgtttcttgctg tcgtaagacttgtggcagttttcaaagggacaatgcaggcgtactggaattgactgagcgtcgcagacattttcctttga ttggcgagacattgcagtgccgaaaatcgtcaaaaaatactcaccgaaaaaacaccgagcaaaaaggaaaacaataaatt gcgtaaatttaaagtcctcagacatgacaacactggagataagctagctttccaaaatcccgtcattcgactgtactaag tgtggacaagtgtggacatcaaacgtggtttatcgacgagcagttaaagtaagcttaactaaaggcaaaatccacacatt attgtgcaaaaggtagctttaataaccaaacaaagccaacttaatgcagttgaaagaactggaaaccaaaataatcaaaa aaccgtgcagatttctgcttaaagttcaacagcatggcctatcagctgagattttcaacatgaacgaccgaacgcatcca actctttaactcctgcagtattccattgccaaaatgtgacagatcattctccgtgtctcccacatttcctcttaccgaat gcagagagtaaaagttcaagtagaaccgaggagatccgctactacgactgccatgttttaaattcgaaaacacctcaggc ctcgcgcacgtttatgggatatggcattaaaattttcgtgcccaggcctcttcatgacgtcaccagatcacctggagaga tcagccaataaaggtacactattggttcccattggtatacctatgacctgccggaaaacagagctttcaaagcaaacgta gatgttgtcgataagaaagtcaatagcaagacaaagctctctagaagagaagtatgtctacctcatggatatcctatcat tcgttcagaaggtgccgaaataattggctgcaatgaagcttttcctttcgtatgaaaaactctctccaaaggatcatgaa gttggtttttaagtggtcctccagtgcaccgataacatccaacgaattattgatcatccactcaacaaactcagcaaact ctctaagacctttgaaaacaaacaaaaatttttaaaacaacaaaacactgtaacaatatctcaaggtttgaattggttac tttttcttctattttatgttgcaaacatacatccatgcatggacaccagtgtataacaaatacacccaagcataaatcca tctgttgcattttatgattctctttaccttatgaataacaccactccgtcttccgaactttttgcaagggctcaaaatac tgtgccatccagggaccatgtcctttctcatatggacttgaggaagttcgtgtcggtaaggtaaaacgaatcgtccgaac cgtctgcagatattgaataaggaactgtacccattcaccgaatctctaaatccttgcgccaaatatgatgaacttgaaaa tcatgtcaactattttgtccagtagaactcagaagaatccttcgcttgatgtgcccataggactgattgtcagatgcatt ctctctgtaagtacgtttgacactttcagcacgtgctgaaggtatgctaacattgtcattttgatacatatcattttcat tccttttccatattttcacttggctttggccaacttcaggttctctttcttttctaattcccgtgccactttgttgatct gtgaagttttcatttgtctctgacatgccacaactgtcatcttggtcgttttctgtttcgtctcttatatgatgcgcaaa agtttctgttaaacttatgtagtgcatgccatgatcctcacaaaaatgtccaagtgcaaacctggcaacaggtttggaat cctgggctacaatatgggttgcatggtcttccctcgatgaggatattatgtgaagttgaatctgatacaagttagctatg gcttgcagagtcaactgatcgccgtatgtgctatcagatatcatttgctccaagtactcactccaaggcatagctacgaa gagctcaagaggcattccatctggggcactgtcatgccctttcaatatatttgcatacttcatccccatgtctctgggaa cgcaaaattccaatattttgatgatgatgggcaacagcggcaaactgacaatttccattgccagggggggttgaacgtta ccttgtatccctgattttcaaattcttcatatattccttttgttgttacactcgtgtgattcagagaagtaacagctgaa tttttatctagatatttcttcctggcagctgctccattccttttaggtatttccttcttctttctttctttcttcagtca ctgccagacttgttatatctcccacagagacccacaaggtaacatcacagtgtgtttcgggatgctcatatttgaccttc taacggaatagtttcaaggggaactccggggtaaaataattattgatgtcagtttgaatttttggcctgtaataattgct ttttcaatttttgataaccgtttcaactaactgtttgttttatccttcatatgttaccagaaagaggagcaaaaaacgcg attagaattctgccatgttgtgacgtaagatcatcaaaaggttttttgccggatcttcaaaatacagctttaatacgata ctttccaaaccttttaacttttagaagcctttctctcttagtatttcgaagaaagtggtgaactgctgtttcccgggctg tacaaattattcggcaaagacagaagacgtaacctatcacagaatcccatcggacaaacagcgaaggaagcgtggctaga tagaatacaacgctacagtacagctaagtttgcagtgaccacttcttgccaagctgttatgagttgaatcttcgatcgca gatcaccactcagaagtttaactgcagactaaaggaagacgctttaccgtctgaatataagtattctccagaggccaaaa agcctcgactgtcaagcgaaaatcaccaggatcggcgaaggcatcaggaagttagtggtttatgttgtattttgtattgc tataagctttttttttttcgctaaggtgccttctcacaagaaaatatatgctgtgttatttgtctgactaagtttgggtc cacgctatgcacggcaatgtttcatccatagggaggattttcatttttcagaattttcatttactgttttttttttaaat cttgctaaataacactgacagatcaaagcacgtgttaacaacgacttgtaatttttaacccacattctttttatgttttg ctacagaaaggcaactgatttacctgctctgttagtgtaatggagttcatttaccaataaacgtgaaagagacttatatc ccttgtgtttgaaacaaatgttacttgtcttctgcttggaacttgcagttccataattaagtgcaaagggaggaaaagag ggttgtcttgatactatctgttgacacaagtttggttttcatttaaaactgtaaatgtgattcatattaggctgttgcag aactattacagactgccaaaggcaacgagaatacttcacccgatgaagaaataagtaatgaggaatccatcattgttgaa aacatattggaaccctgttctgaaaggccaaggaagtttgatattggaatccagtgctgctttggacccatcacccttaa aaatgagtcaacccaaatggattgtgttaatgatgcaccacctactgtaacgatgctaatttatgcatgttaagttaatt tatacagtcctgtttacatctgggatccagcattagttcccgttctttgctttagatgtacactcgatctgaaagattaa aacgttgtgttcaagtgctttagtgttttgtcatctgtccgaggggctacgacacatggtgtcagaagtgaaaaccagtt tctgcaataagtgccgtcgacgaattaccgctcagcttaccggaaagtattctggagagagatttcttggcgcgcacgtg gtcgagcaactcagacctgagagtgaactgatatttacctacgatagtcttcgacccctgctgtgttcggcgctcgccac tgcaaaccttcttcacaacaaatagcagaagaccgcggtgagtgaaactgtcttgtgttttcagacagaaatctcccctg aaggaatttagcaaacttcacattacaaatatgccaccaaaacccgagggtagcggcatatctgtgcaagtacaagaagc catcgcacagccaaatacagtacaaatcccgataaacatcccattgccctctaagttagaactcacagggaatctggcga ccaactggaagaaattccaccgtgcttggaacaattacgaaatagctgctcgtctaaaagatcctgaaaaccctgctata aacaaatcgctgagaactgccacactgctaacctgtattggctcggatgccctagatgtatacgaaggcttagaattcga cagtgaacacaataagcaggacattaatattgttctccaaaagctacagcgttattgtatcggagagaccaatgcaatat atgagagataccgatttagcaagagagaccaagagccaaacgaatctctggatgcctacgtcacggcattgcgtaccttg gcgaagacatgtaactttggagtgttggagaacagtttaattaggaccaaattgtcattggagtaagagacaatcaaact cgcaagaagctccttcaagtctccaaactcacattaaaggaatgcattgatatctgtagatcatatgagacctcaagcca ccaattgaaagaaattaatcacgaggaagtcagcgccattactcagtccaatgaaaagaaatctagagaaattcgctgca agttctgtgccaaaacgcatatctggaacaagcttaagtgtcctgcatggggaaagacctgctctaattgtggatttcaa aaccactttgcggtggcctgcaaaaccaaaccaccttcacccagttcggcctctaaacctctgactcctagacacgtccg caaaccagtacatgcagtggaggattcggactttgacgaatatgtcgcttgtgttgatgtcaaggaacatgtctgtgctg tggaaaatcctaaccgtaaggataagctgcttgcagtaatgctgttaaatggtcatcgagtctcattccaactggacact ggtgcgacagtgaacatcttacctgaagcgtctttcaaagaagtgtatggggaaggtagcctatccttgttggacaatgc agacataactctcgtcatgtacaacagaactgaggagaagccgatcggcaagaaacgtgtccaggttgtgaatcccagaa atggaaggaaatacagtgtggaatttgtagttgtaaaaggaaaaagcaagcctctgcttggcttacnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngccaatcgccatcaaaga aaagctaaaagaagaactggatcgcttggaaggccttaacatcatcacaccggtaaatgttccaacctcctggatatcag caaccgtcatcactttgaagaaaaatggtaatgtgtggaccccaaaccactcaaccaagcccttaaatgcaatcactacc cgctaccgacgatcaaggatgtccttcctgagctaacaaatgcacagtgctttcctgtgttagacgctaaaaacgtgttt tggcacgtgtccctagacgaggagagcagttacgcaactacatttggcacaccgtggggaagatacagatggcttcaaat gccattcggcatctctccagcccctgaagaattccagcgaagactagatcagatattagtaggactaaacggatacaaag cgattgcagatgacatccttgtatttggatgtggagctaatgatgacgaagcagtaagggaccatgataaaaaacttgtt gctctacttcaacactgccgagataaaggtgtaaagctaaatagggaaaagctgtatttaaggcttaaggaggtcgcgta catgggccacgtgctcaccactgagggactacaaccggaccccgaaaaagtcaaggcaatcaaagagatgccaacaccaa cttacaaacagagcatccaacgtctcttaaggctggttctcactagcgcataagcataacataagcataagcataagcat aagaaaaacgaacatttttgttttccttgtgtcggcttgtgcttatgcttatgcttatgtcgcagttttcacaagtgaga acggggccgacataagcatgagcataagccgaagcgcctcaaccaatcacaggtcacttcgacccagacttctgcggaaa gtatcacaagcaaaatggcggacgctatgacttctgtagacgagttgctcgcagaatcagtcaggttatatccagttctg tacaacaaagctgataagtttttcaaggatgtaaacaagaaaacgctggcgtgggaagacgtggctaaaaaaactggttt tccctcaggtaattatcagacacgtatgtttgtttcctgttgttttgatcaaaagaaaacaacgaaaatatggcctactg cactttttgtccgttgtcaccacccaaattgaagatttaaatcaagaccgtatttcttaatttaagaatataagtataag agtgaaacaggcatcaaagatatttcagttattgaactgcgtttttccagattatgatcgaatgtgggtgtttgtaattt ataggaaaagaggcggagattgcattcaaaaatctcagaaacagatatagcagagataagaaaaaagtacacagcgcaca agtgagtggaaccgacacacagtcagtagtagctgcaaaacagcaaacaagtgagctgtattcgtttctggcttggctgg aaccatacattcaaccaagacggtcaagcactaaccttgtcgtggtagagggaaaagatagtgatgctcaagatgaagaa agtactgacatcgactttgacagaatgtctacgaggagtagtacaccagagcctgatcccttgtacaaatctaaa |
Protein
Protein ID | aug_v2a.15732.t1 |
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Definition | - |
>aug_v2a.15732.t1 MDIARTKEATVNDMKSLEQQGASARPHDTNIGAVKQNSNHKCGKCGLSHGKKCLAKGVHPDLEKVDAIRAIQIPQDAQEL QSFLGIATYMAPFIPNLSAMSEPLRNLLKKGTDFHWSPSHSTAFEKIKQSLCRQVSLMYFDPRKETVVQVDASLRGLGSA LVQEGKVVAFASRALTDTEKRYANIEREMLADVVACEKFHSYLFGKRFLVESDHKPLEMIHLKILTGAPPQLQRMLLRIQ GYDLEIKYKPGTEMLLADPISRLSPLPSKEPLDLHKLPSPAELLYQRKLQANLPIRVGNQIPDRDNITQRLTERQQLMKH YYDKKAHDLSPLATGQPVHIQDQVTKKWFPGTVNCIRPEPRSYKVKTHSGSILRRNRRHLRPADTGQVVVHSEDEPDGSD EPAEASHNVQESAKPSQTIMPSPARDVGVTSGPPCASPNPGTYRTRSGRAGSKYCAIQGPCPFSYGLEEVRVGKKEEQKT RLEFCHVVTQKSPLKEFSKLHITNMPPKPEGSGISVQVQEAIAQPNTVQIPINIPLPSKLELTGNLATNWKKFHRAWNNY EIAARLKDPENPAINKSLRTATLLTCIGSDALDVYEGLEFDSEHNKQDINIVLQKLQRYCIGETNAIYERYRFSKRDQEP NESLDAYVTALRTLAKTCNFGVLENSLIRTKLSLESYETSSHQLKEINHEEVSAITQSNEKKSREIRCKFCAKTHIWNKL KCPAWGKTCSNCGFQNHFAVACKTKPPSPSSASKPLTPRHVRKPVHAVEDSDFDEYVACVDVKEHVCAVENPNRKDKLLA VMLLNGHRVSFQLDTGATVNILPEASFKEVYGEGSLSLLDNADITLVMYNRTEEKPIGKKRVQTSAESITSKMADAMTSV DELLAESVRLYPVLYNKADKFFKDVNKKTLAWEDVAKKTGFPSGKEAEIAFKNLRNRYSRDKKKVHSAQVSGTDTQSVVA AKQQTSELYSFLAWLEPYIQPRRSSTNLVVVEGKDSDAQDEESTDIDFDRMSTRSSTPEPDPLYKSK |