Gene
Gene Model ID | aug_v2a.17022 |
---|---|
Locus | scaf8291 : 7408 ... 16633 : - |
To GenomeBrowser | scaf8291:7408..16633 |
Genes list of scaffold | scaf8291 |
Manual annotation
Study field | Collagen |
---|---|
Gene name | Collagen Domain Containing Protein6 |
Annotation by Blast2GO
Annotation | GO |
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collagen alpha-1 chain-like | GO:0005578 GO:0005581 GO:0009653 GO:0030154 GO:0030198 GO:0048513 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
aug_v2a.17022.t1 | gi|512895066|ref|XP_004923583.1| | 5.99994e-41 | |
aug_v2a.17022.t1 | gi|637337287|ref|XP_008115789.1| | PREDICTED: collagen alpha-2(V) chain [Anolis carolinensis] | 4.0e-32 |
Transcript
Transcript ID | aug_v2a.17022.t1 |
---|---|
Definition | - |
>aug_v2a.17022.t1 gccccggtggtcccggtaatccgggaaacaagggaagtcacgggaagaacggggatgctggtcccatgggagatgttggt ccccctggggaatctgggtttgtcggtctccctggcgaggatggattgagcggtgtaagaggcatgccaggcaaaccagg ggagccaggagaaatggtacgtagaagaacttgaaatctgtacatgaatccctcgaacatctctttgtatcgtgtccgat tgttacaacgtttggcagtggtttaattggtgggtgtagaggtttaaatgtgaaaattgaagcattcggcgttttagata tattagggagcttaagcaaccacgacgacgacggcaacaaaaaccccacaaatttgcatatttgacagtgaaaaacagta tttttgcacgctttgcacgtgcatttttcatcttttgacattttgaagacgttctcgttctttcacgacgtgaaatgacc tgtgtggacgacgtgagcatatgatgacaaatgttcaattttatcttatgtccaaagcgctggttccaatttaattccag gatagttagaacacatttttcaaacataaggagtttgaataattgaaaaatgattgcagaaacgcgaagtcacattttca tttgacgttctcgctttcgccgacgtcgtgtttgcttaagctccctaatatttggcctatgggaacggaagaaggattat ttgtggatgagtagtcatatattcaaaagatggcaagagtttaacgtccagaatattcttttttgagcccaggtggtgtt cgtgaaaggatcaaattaacttgacatatgaaatacaatcatgtttagggcgattctggtgaaggaggacccactggaga acaagggcctgtaggacctatagtaagttgtaatcatgctatttttgtgacctatactgttcgacttcaagttatccttg gctacaactttttctttatttgagtttattttttcctgtttcgtgcccgtagggttcaccaggagatgcaggacaatctg ggatgagaggagacgaggtaaggatgaactactttagcaggtcgagaacgagacaccctatgtatttccatacactttct gtaattggagaaacgaaacaatggatgctaaaacacaaacaaccctgatagcaatagaaacgacaggtggtctgggagag accctgtgcctctcaagacacggtctgtgattggagaacgaaacagtggatgattgacgtctttctttctttctttcagg gagaagttgggagacctggtggctcaggacctatcggggaaaaaggacgtccggtaagacggcttcttttgtcgaagaca gaagaacttaatcaacttgtatcgtttctcatacacaacaagactactgttaggtcataattttacaattaatgagatga gaaatgccttatgttagtgttgatggaactcgtgggcatttccgaatgcgacatgaatttttcatatgctatttaaaatc gtggaaacttaagagactggaagcaaacaacgtaatttcatgtatcagttatcgcttgaacaaaatatgtgcgtcggcaa gttcgtttccaggtcccttcctgtcgaacctgaggctagatgaaacaacgatgatcacttcaatatttttgaacattcac tgataattccggttttgcttgtgttttctgtttagggactaggtggtgttcctggaagaagaggattgcaaggtcctcca ggaaaaatagtgagaaacaaaagttgcaagatattttgaaaagttttgaattattaacgcatgtgaaatccagccttcct ctccccaagagcttattttcctgattaaacttgatttgacagatatgttaatagtgaaccttttttcgactgttttgagg agtcgataagtaggagcatgcaattcccttagtaagcctatgtcacggcatttttacagacttatctattttgagtatac cttttcttttgtgaaaagaaaggcagttccggtccagtgacgctgtgatgtcaattaacttcttgtgactgaccaggaca ctccaacgggagtcacattccatgggagttcggtttaaaaataaatcggtctacgaaaaggcagtgacaggaatatagaa gagttgcatgctcctactcatcggctcctgctgttttcctttgtttctttttgtcagggtnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatatattttttcagggtgaacgcggtggcaaaggattc gacggcctcaacggtcctgagggactatcggtagagcatctagcttgtgttatttcctaactgccctgaaaaacagtttt ggcggagaatgaaattgaacattgagaaatggtagtaggtctcgctgcggtgattgtgagaaaagcttaaaggcaccgcc tggaaatttccaagaacggatcaaagcaagtttgccttcgcaggaaggagaggcttttacatttattggagcgtaaacgc cgtctttcagaccttttctttcatactacataacagccggatctttcagttgacttctttttgtcttgtcttgacgttag taacgctgtcgtataattagtcttgaatcgatcttaagttggtaaacgtatcgatttatttacctcactagggcttcaaa ggaaagcgcggtcgaaaggggtcgagaggtgaacctggagatctggtaatgtttcttttgaaacactaaaattaatgcat tacgattttgatcaataacactaatggttgctatatctggtaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnaatttagggagacgttggtttgagtggttcccgaggaatagctggagatagggtaaa attttcacttatatgagcgctagagcacgaagaagtcagagaaatggcatgctgcatgtaatcgtccttagaggaatatg ttttcgatgaaattcagtaaatttaattcttataatcagcattttgaatttgcctttccttattcaagaaaatactactt tattatatttagctgtaggtgccgcttatgtgtgaccttattcttgattacgcaaatctacatttatctttattagaaaa actaacgccccgtattagttcggaattgcttagatagttcaaggctcattcacagagttagttggattagcagataccat tttccggaaaaaaatcggatactctgttgggggttggtgaaggacattaatctcaaggtgcgcgcataaggtaatatcac aagatgtaggataacgatgttgagcttaattttgtcagggtcgcgaaggacgacctggaatgggaggaatggctggcttg ccaggaaatggggtaggtcattgacggataatgaagttgttgctttcccaacagggattagcccatcatgaaaaaaaaat ggaagcggaaatgaagcaaaagaaattataccgttagggttttctccagactgcgagtggtctctgatagtggtcgttat agttatcagtgattttgccacataaaccaggctaatgggtgacttgtccattacactaatccattagcctcgtcttcagg tagctgtaaaccacaaaatgttttgcctgtaggctcagctattttggcgagcaatttgggcgaaatgctctcacgcgaga ggagtgacgaaaagtagattaatcgcatagttgggtttctcagagtattttgtcaatattttcgaattcttcgtcgcaat gaccattataaattgattgaacaagatttttagaaataatgcttcaaagtcccgggtgatctaagagaactcctgctgag ctagattgcttaactaggttctagattttaatgtaagttttagtgatctacgtcttacactcaacagggtggaaaaggag aagatgggatccctggagagcaaggtggactggtaagacatgtaatgttgacgttgttgctaagcgacgttgtttttatt gattgttttgtttgtttgtaatgatagatttcgggagcaactgcagaatacccggtcctggagcatgtttctctaaagtc ccgaaacttttggggtctatttcgtttgccacaattccctttaagtcgtcgcaacactgaggttctaagccatcaaagtt cgcaatactcttggttattcgtacattaaaaacatgttaaaagatcagcttttcaaaacaagcggattgctgtttgacaa ctgttttttctgacacgaaaagttctcgggactttctagaaacagtcccctgctggttttgtatttttggtggtttcagt gactcatgctgaagtgacgtgacgctacgccggttcttgccaagctaagtcactttacgctactgtaagctagtcgcaat atgttcgagaaacaggcccctgaccctaaaaattttgatgaacgagctagaaaaaaatataggtttataatgcggttatt aatttgttatttctctatgagttgaaatatcaagccctgttaggggcgaaaaagtccactatcaatcttcgccaccttag ttcgagaactgacatgaattcgtcatttgtcttttaccgatatcaggggcttactggcaaacgtggtaccgttggttcta gagggattaaaggggatgaggtaggttgagaatttgagtttatgaaaagggatgaaatgtgatgacgttcggtgaatgtg ttattttacaatttaagggtgtccctggaaaacgtggaattgtgggagacagagggcccattggagaaaaggtacaaaga ggactcttgtctttctgtttagcatttggaaacgattcgccaaaatcctttgattttgatttgatttttcgcggtcatgc agggagatccggggccatttggaagacaaggagtaatgggacctcgtggagtgcaggtaatttaacgaacggtaaaaact gtcggctatatcattattattctcccatttcttagttgtttaggttgacaagacagccagcgatacgcgcgagaggaact caataattttctagtcgttctagtttcaccctacgaactttgtatagagtgttttcacgtgaacgtcacggccgccatgt tgatgtccctaaacaaaagaaacggcggccatgttgctgtccccatctaatcctctgggaatttaacttcattcttatgc aaacgctttcttttgttttgcttcaaaaacatgttcattgatcacgtgagtgaaaacgctctatagtgaggttgtcccag gacaagcgaaaactcggggtttggcaaaatttgggggagacgtttcacgtaggccgatgttatataacatagtggatatt gcccttgctggaagttcaaggacaaatgcataatggctgattgaattgatacatagtagttgcgaggagcgaattattgg attcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnngcctgaggtgtatcgaagtcccgcctgactggtggtttttcgtcataacttctgcggaaaaaagagcaacaatggtg aagtctaagttggtttgaaataatgtttccatttttcgttttgcagggaagggctggaatccctggttctaatggagaag caggagatcaggtgaccaaacgtttgtgtagagagtagcaaaggtcactgttgcagtgtatcatgatgagctcaagtggt agcgcgctggtagtacgaagccaaatgctgcgctgtgattgggttgtattctgacgtcacgatatacgacaggagttcta ctatatcatgtgacaatcgggagaacttgattgttattttactttaccacgatgaaaaattaaaagctttctcccggtca ttgacaatcattgacaactgaattccaaaggaaaatgagggtattttattttccttatgagttctttcatggatcatgat gtatttacgattgtgtctgttttgtaattctagggagatccaggaaaccacggagaacgaggagaccaaggaaaaatggg tgaaaatgtaaagtacacgtctctaaccattgtacatttcagcccaaatcatgtgtgtattaattgctgtgttctcttct tttgcaggggtcaccgggagttcctggtgaaaccggtggcctgggctctgccggtcaaagcgtaagaaaaatttgcacca agtctcaatttttctcttttttgcggtatacagtctgaatattactcgtggtctgcagtctgcgttttaccctgacctat tatataaaatcattactctctttttatgagaaccctttaacttgctttcagtttaatcttttaatctaaagatgaattcc gccctctctactgtgtgattcttaaaataaatgataaaaggaaagaacaatgtcaggccatttcccacatatcatagttc caaattaaatatcgtgtcctttgacaatgtgcaatgctaccaaagtgctgttcgcaatatgtatgaacatatatcttcct catctttttctttccagggtgtcgctggtcctcgaggcaatgttgggatacctggtgtaaaaggagagagtgtatgatga tttttcttacgttggaatgctggaataacacagaaaattacagcagtctgttcacatatacataccacaatcaattttgc ttttattttactgcaagaaagctatatttgtgccaatacaaacagcggtttacgacaggatcttttgactatttttagag gaaaattctcgcagcaattgagtatatgtagttaagaattcggtagacaaggcccaactacccttgttaaactaacgcag tgatgaattccataaagttgtagatgcatgcattgtttgatcactgtatggattaatgaatcaattgaaccaannnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnccgttggctggatctttgcctacagggagaagaaggaccaacaggcaagagcggcaa gcgtggaggcgacggtactcaggtgcttacgccatcatcactatgtgcatgttttacatgagcttgagagcaattttata gcaaaacatcgtcttgtttttgattgatttgcagggtacaaatggtctacccggcgacaagggagaagttggtgtcactg gctcacctgtgagttcattcgtaatgtgtaactttaagaaagaaatctttagagaagagagtgacatcctttgaatactt ttgactagtaagtggctgtaagaatgatgacagagcatctctcaataacttataatcactttgtgaagttgcggcaggtt atatacttcgcgaatttgccaggacacgctccagtaggcttctagatagcactgagatacgccttgttccccgatcatcc tgaccgaataaacgtgtatcatcatt |
Protein
Protein ID | aug_v2a.17022.t1 |
---|---|
Definition | - |
>aug_v2a.17022.t1 PGGPGNPGNKGSHGKNGDAGPMGDVGPPGESGFVGLPGEDGLSGVRGMPGKPGEPGEMGDSGEGGPTGEQGPVGPIGSPG DAGQSGMRGDEGEVGRPGGSGPIGEKGRPGERGGKGFDGLNGPEGLSGDVGLSGSRGIAGDRGREGRPGMGGMAGLPGNG GGKGEDGIPGEQGGLGLTGKRGTVGSRGIKGDEGVPGKRGIVGDRGPIGEKGDPGPFGRQGVMGPRGVQGRAGIPGSNGE AGDQGDPGNHGERGDQGKMGENGSPGVPGETGGLGSAGQSGVAGPRGNVGIPGVKGESGEEGPTGKSGKRGGDGTQGTNG LPGDKGEVGVTGSPVSSFVMCNFKKEIFREESDIL* |