Gene
Gene Model ID | aug_v2a.17219 |
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Locus | scaf8510 : 277 ... 5932 : + |
To GenomeBrowser | scaf8510:277..5932 |
Genes list of scaffold | scaf8510 |
Manual annotation
Study field | Collagen |
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Gene name | Collagen Domain Containing Protein26 |
Annotation by Blast2GO
Annotation | GO |
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collagen alpha-1 chain-like | GO:0005576 GO:0009653 GO:0030198 GO:0031012 GO:0048731 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
aug_v2a.17219.t1 | gi|699587818|ref|XP_009865266.1| | PREDICTED: LOW QUALITY PROTEIN: collagen alpha-1(XXI) chain-like, partial [Apaloderma vittatum] | 3.0e-26 |
aug_v2a.17219.t1 | gi|585647254|ref|XP_006814015.1| | PREDICTED: collagen alpha-1(XI) chain-like [Saccoglossus kowalevskii] | 2.0e-25 |
aug_v2a.17219.t1 | gi|667249093|ref|XP_008591712.1| | PREDICTED: collagen alpha-2(V) chain, partial [Galeopterus variegatus] | 4.0e-23 |
aug_v2a.17219.t1 | gi|744548551|ref|XP_010972975.1| | PREDICTED: collagen alpha-1(XXIV) chain-like, partial [Camelus dromedarius] | 5.0e-21 |
Transcript
Transcript ID | aug_v2a.17219.t1 |
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Definition | - |
>aug_v2a.17219.t1 gatttaaaaggaagtccaggaagtaggggactacatggtaaaagggtaagtgcctcgcaggctgaactagttttatcaac gagtctttttcgccgccttcactgacatgagttgggcatgctttttttagggcgtggtgggaaagccaggagaaaccggc caagctggcgaaattggctttgatgtaagttgggaatcactttcttgggcctcatttcatctcgctgatataagctaacg taaactatacactgactcttcctttagtgggtcgatataacacagaattgatttcgtgaaaaactgttctttggagttca ctgatcagtgaatggttttaactttttatcaccagggagaacccggcagtcccggaattccaggcttacccggaagggac gggactcgggtaagtcttggattgcgtacctttagttcttatgggtcaactctgggcacgttctcgagaaactggccatg taacaaaactgaggaattttcatcctcgcgcaaggggaatcatgctgcatttttacgttaaatcagatcattttgaaatg cattggcacttttgataaaggggggaaaatagtgttcttccagtggcaagccaagtgaacccgagcttttactggagaga ggtttgcattcgtatctgctgtttcgtgtatagccgactgaatgcgtttcaatatgctttaaagtctgcttcgcatatgg cagatattgcgagcagtttcaacgtccaacttaccagaggtagtaattgacacgctttttcttaatcatgtgtttcgcag ggcgaaagaggaaagcagggaaaacaaggtctacctggattgaaaggttatcaggtgtgaaaatcttcttatctttttgt gtttctggagtcgtcgtcgtcctccgtccatctcgaaggatgatggctgcacgctgttgggtcacgtctgggtgctgcat ttcctctgatggctgtacagccctattctggagtggcagtctctggagcagatggggcagatgtagggtgatgctgttgt gtcctgcgttgatctcgccctgcgctcagccctcttctgctgctgcgtttctgaagtaattaacagcaaattgtacccac tggatatcagagatgtttcgtggacgctttctgtcaacttacttaataagaatgtcattatttttctaaggagagactca tttctcaattagatttcgacacgtaaggccgcatttaactggaccttggatctcggtcacagagtatgaaggtctctgtg cacgaacgaagaacgcttttctggcctttgatttcctttttcagttatgttgtccttcggataaaaattatttgtcgtat tgcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnttcttctttcaattttatacgatgatacggacaatacggacttaatttcatttct cggttcctttcttatttcagttcttgtttgttggatttatttgtttgctcatgagattaaattaacccgttattgcgtac tgttttcacagggaaggcaaggcaattccggtgaaatggggcaaactgggccagtggtaaattatttcattttatgtccc tctaagtagacagcgaaagtagcctagttgggctggtaacaatttattacaatccaggaaatgtgaagatctcaaaaaga atgcgtgaacatacttgaatttttccacagggtcagaaaggattagacggacctccgggtttacccggccccattggtga tcccggatccccagggtttcctggtcgtaaggggccccagggatttcagggagaaggaggctctagcgggccccgaggga aaaagggtcaaactggaaacagtggccatgatggcattcaaggaggtcccgggttcaaaggaagagaggttagtaacggt ttcgacctaataatggaaatgaataaaacaaattttcgcaggttgctccttctagtgtgcttcttgtctgtatgcttcct tgaggatattcgcttaaatagagaggtcaaaactcccgttttgttagagtcgttttagagtgtttttagataaatcatgt aaattttgttgagtatagttttatttacaaatgagctcgagagtggatagtgccatccgctgtataaatcactatccagc agataagtgcaatcaaaattaattgagttatgcagtgaatagtgatttattcaatggattgtgctgctatcaaccctttg aactactggggcctgttgtatagcgcgcaggggcttggtgcctagcttcgattgcgtaccatacaagagaggaggctgcg tgcactctggctatggatgaagctgtaattttcattttgtattgtgttttaacagggtgacggaggtatcacgggatcag agggcgcgcaaggagctgctggcgaacaggtagttcctcgcgtcatcgttgattgcttaaaacaatcaccactgctgata acattgtgtcagttgccagagattgagctgttgctgtgaaatgaaaataaaagagacgttaggaacaacaatgtcagtaa aaccaatctctctttaatttgctttgaatcgtttctaagactagtatttccgtgtgtgttaaacaccgtaaaatgtacct gtttttgcttttagggaagtctgggtgatgctggaccgagaggaggcactggaagaccggtagagtttatagaacacact gttcatttttgaggtctcacatctgttaaatatagttttacgtcccatccctttaaagtgcatagctatttaattctgca atatgtccaccttttctttgcagggtgagtatggagctcgcggaaaacgaggaaagtctggggacaacggcaaacctgta agtcttttttttttcgcagccagcatgacatttcccttattaggcttattatcacgtctacttaaatgaaaacccactag atctgtaaaaccatcttgagtgcagtgatatcaattggattataccatttacacctctagggtcgacagggggcttcagg gattcgcgggctcccgggagaaacagggacaaaggtgagttaactaaaagacttgctattacgaaagtcttacgctcgaa acgtcagtttcacaatctttttaacgttggtaacttgacctgtatcaactctactcatttgataccaaattttcgtgtaa cttgagaatacaaatatgttagcaaggaccaaacgtaacaaatcaaaggcatcctgtggtaagctcgtgcagtaagtaag atactgtgttagggaggtgataaatcgaattctgaagcctatagagtggtttcaaatgcagtatgattcattttttctgt tttacgatttcgtccgagtaagagcattcttaacgaccatttaatgaatgcataaaagcgcctgccgaacttgagacgat tggaaatcgattacaaactttccattgtttacgcctgacattccgatttcccaaccatcccgatagctctccacgagcta aaaagatggcacaggatcctggtaaaggatctgatcagcagtaactttttttaatgcaaatgagaaaaaaagcaaagtct gatcaagcagtggaaggaatacgtattattttgtcaagtatttcgaaaggcgcttcctttcttcatcagagtgttgcaac ttagagactgttgctggttctcttgttcccaaaaatggcagcaaatttacagcgtttttcaggaactagcggtgaaactc accattgagtgaaaatttattgatttaacagggtctccagggtaccgtcggaccaagagggcgaggtggacagcagggag atcaggtcagtggattacgccgcagataatgacaacttatgaatgtttcagtgtcggttagtgacgtcaagcgacatctt tcaattacatttctctctgagtttgaaaccttgaaggcaaatctttatgattagatcaccagaaagatcatggaagtcag gaaggatatcttcttcctccttgcttttcaacgtgatacttgtgagctcacgcagtttgttttgtcttttttcttcacac agggactttctggagagcgtggcgcaatgggaggagatggagccgttggaataagggtaatggctcaagttatcccagtc ttcttgtaatattttatttcaagtcaggccatggtctgagtattgtcaaaacaccccacttctgttcaatattccagggg aacacgggatacagagggagtagaggcccacgaggatacaagggaacctctgtgagttattttttatcgtttcattatgc atttatcagatttgtactgtcgaccttcttgaactcgcgcgtccatattccatcgtcctgatatccattttccattcctt tttcgaacaccttccatataggctacagttccatgaaaagggaaatacgtgtaaatggcgtttcgtctttccctttactc catattcggaatactttgattcctgtgattagcgtaatgcttttgcactttgtagggcgcgcaaggcagaccaggctcac agggatctcagggtcctacggtaagtcattttctggcactgataacatcatcaacacaatttttctctgcctttgtagag actgtgaatgatgctgttgtcatttctatcgcagggtcgtcgcggaaagagtggacctccaggaagaggaggaaagaatg gaatgcctgtaaattgaaaaagaagagcaccttaagcttagaaatcgtcctttctg |
Protein
Protein ID | aug_v2a.17219.t1 |
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Definition | - |
>aug_v2a.17219.t1 DLKGSPGSRGLHGKRGVVGKPGETGQAGEIGFDGEPGSPGIPGLPGRDGTRGERGKQGKQGLPGLKGYQGQKGLDGPPGL PGPIGDPGSPGFPGRKGPQGFQGEGGSSGPRGKKGQTGNSGHDGIQGGPGFKGREGDGGITGSEGAQGAAGEQGSLGDAG PRGGTGRPGEYGARGKRGKSGDNGKPGRQGASGIRGLPGETGTKGLQGTVGPRGRGGQQGDQGLSGERGAMGGDGAVGIR GAQGRPGSQGSQGPTGRRGKSGPPGRGGKNGMPVN* |