Gene
| Gene Model ID | aug_v2a.17371 |
|---|---|
| Locus | scaf8708 : 7796 ... 12257 : + |
| To GenomeBrowser | scaf8708:7796..12257 |
| Genes list of scaffold | scaf8708 |
Manual annotation
| Study field | TF not for publish |
|---|---|
| Gene name | Adi-HLH and HMG domains containing |
| Description | This gene model has both bHLH domain and HMG domain. It showed similarity with Homo sapiens capicua. bHLH part of this gene model was eliminated from the analyses because its amino acid sequence is highly diverged and difficult to be aligned with other HLHs. |
| mRNA evidence |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| aug_v2a.17371.t1 | gi|391348449|ref|XP_003748460.1| | PREDICTED: uncharacterized protein LOC100909327 [Metaseiulus occidentalis] | 4.0e-18 |
| aug_v2a.17371.t1 | gi|733868340|ref|XP_010721228.1| | PREDICTED: HMG box-containing protein 1-like [Meleagris gallopavo] | 6.0e-17 |
| aug_v2a.17371.t1 | gi|657749332|ref|XP_008310035.1| | PREDICTED: HMG box-containing protein 1 [Cynoglossus semilaevis] | 2.0e-16 |
| aug_v2a.17371.t1 | gi|390339529|ref|XP_003725023.1| | 3.0e-16 | |
| aug_v2a.17371.t1 | gi|641784539|ref|XP_008174579.1| | PREDICTED: LOW QUALITY PROTEIN: protein capicua homolog [Chrysemys picta bellii] | 4.0e-16 |
Transcript
| Transcript ID | aug_v2a.17371.t1 |
|---|---|
| Definition | - |
>aug_v2a.17371.t1 ctgttacttcaccacaaaaattgaggtaaactggaaaacgcttttttttctaattacacaataattgtttagctatattt ttcaaatttaatcttcccctaatatctgtttgaaagaaaggatgaagttttcttgtttcatttatcagttaaatcgtctg gaaatttgctaacaaagacaacttgtttacatatcatttatttgtgtttacagttaaaaaagaggtggagtcacaaatgc aatggactaagtgttcattatatctccagaacaagttgaactttgatgacttgggcttttttttgtgtgctctgagttgg gaagattgatatctttatccatgtcatcctaaaagaaacaaatttttctcagtgaataattctgtctgggaataaattga ttatttccagacattttcttgacactgaattctgtattaatttctagtggccagagctgctgtggtaatgattattggta tccaggagattcttcaattatggatggggtaaggttaaagaatatctatatgtgtacaaaatgtttagcatttcagttta tttggagacattgactatgtttcaggtcagattgaaccttcatgctaatttgtttcaacccaggtcagtttgaggcaagt acaaaacacaggtcacaggtcattgttttaccaatacagaaagtatcccattcattaaagctaaccttaggcctaaggaa acctaaaaaaagttaatatgcctaatgttagcacttgtaaacagtatgggttgtttctgaattggttgaacaacaactgg tgacctgtgttttttgtacctgccacaaactgacctgggttgaagcaagttgagctaggttgaaacaaactgacctggtt tggaaatgaattaacctaaggatcaaaatgatcttcaacatcttcattggtcactcagcattacctcggagaacatggca ggtgatctagctgagatggtagactatttatttttattacatattatgtgtggatatcagtgtggtaaaaatttgaataa aaatgatacccgtgaagtgatatgatatcatttcactgagtgaaatgatatcatatcactttacgggtttgaattgtcca atcaaatagattgtaataatttggttggaccaattgggttgcttgttatattttagttttagctgacgcctgacgtcaaa tttggcggaaagaattgctttgccaggaagaattgctttgcagttttatcaacactttctcatttnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnaagcctaacaaatcaacttcagtggttcagtgtctgaacaaaagaaaaaccaagccaag gaaactaatcaatacactggtttactatcatcagaagacagtgtgagtaaaacatagcagttatccatgactacttggtg gagttttggactacagcaatcagaagcattgctcaagtgtcccaaatagcataccgtatgatatgagttgaattatgtta gaaaaagccctgagtattaaacgttgaaaaaaagaaagcagggtgtggcaaaacctctgtctgattgttcaaggttataa tctcttagttccttctgttggttcacagtgaagaaaagtgaatttcaaaacttttgtctaactccagaagtggaagtcga gattgaaataatgttaaagtgttaatgtatttgtgtactttaacataggcaaagagaaagggaacgagccattagagaca aaatcgagtgtttaagcaaattgcttccatggagttacttgaaaaacaatcgtccatcaaggaaagacattttagaaagt gcaataagacacatcatgcagctacaagaagacatgcgagaggcatacctccagaaagggctgaggtcagaggaattgaa gagtgctttgcaaggtgacatggtcttaaatttggacaacagtcatcatcaaatcaatgaggcatatatggctgcaggtg gggaaaacagtctccctagtactccagagctcaaagttgatgcagaagatttgtcccttacaatggcatctcctgtctca gagttaagcagccaggggtcagagatgtcagattctgcactctctggtggttcaagaactggagaaaacaccaaacatat aaagagacctatgaatgcattcattttgttcagcaagaaccatcgtacattattcaagcagttgtaccctggaagagata atcgtaagattagcaccctcctagctgagaaatggagaggtatgaaaccagaagagaaagaaccatacaggctggaagct aaagagttgatgagacaaacaaaggagtcgcatccagatttcaagtactgtgatggcatcaagaaagcacctcagtcatc ggccaatggtggcaatgccaggcaaactagtttggaatgtggctacaagtaaggttttctcctgtgcagtttgtcatcta tacaagggctgtattttttttcagtgtggggattaatagttgtaggccatttaagggtataaagtggaacacaagtgctt actagctccactgcctagacnnnnnnnnnnnnnnnnnnnnnnncatacttttaaatcaactttcttaaagcagatcaaaa agaaaaaattgcagctgataagataaccagtaaactcagctggaatatgcctccaaaatggtacttactgttatcatagt gatgctaacatggcatggttccatcaggtatttttttatatacttacattattattacttccttcacaacaaccctcaag atttattcacatgcagaagtatttaaaacgtttaatttgcaagtaggtttgtgttgcagatcttctaacagtgcttttga atgtctttagggttggttctcataatctcagacaaaggtaagaatgaatgacattgttgatcaaagcaaaataccatctc gtttttctcatgttctgcattgctgtgtttcagaggagcaaatgcaagagattttaagaccacaaaaaaagctcaatgcc agcaaggtactcaagagttgctttgtactaaatacctttaacggggacattttgatgatgtttaaccctttcctgcccaa ggggttccccattgacgagtaaaatcatctggtgttagacagagtaaaatctatatataagt |
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Protein
| Protein ID | aug_v2a.17371.t1 |
|---|---|
| Definition | - |
>aug_v2a.17371.t1 MIIGIQEILQLWMGQRERERAIRDKIECLSKLLPWSYLKNNRPSRKDILESAIRHIMQLQEDMREAYLQKGLRSEELKSA LQGDMVLNLDNSHHQINEAYMAAGGENSLPSTPELKVDAEDLSLTMASPVSELSSQGSEMSDSALSGGSRTGENTKHIKR PMNAFILFSKNHRTLFKQLYPGRDNRKISTLLAEKWRGMKPEEKEPYRLEAKELMRQTKESHPDFKYCDGIKKAPQSSAN GGNARQTSLECGYKVGSHNLRQRGANARDFKTTKKAQCQQGTQELLCTKYL* |
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