Gene
Gene Model ID | aug_v2a.17866 |
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Locus | scaf9320 : 756 ... 7436 : - |
To GenomeBrowser | scaf9320:756..7436 |
Genes list of scaffold | scaf9320 |
Manual annotation
Study field | Retrovirus |
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Gene name | Adi-Retrovirus-related 2-1 |
Description | This gene model contains RVP domain, Asp_protease domain and RVT_1 domain. |
mRNA evidence |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
aug_v2a.17866.t1 | gi|585718698|ref|XP_006825930.1| | PREDICTED: RNA-directed DNA polymerase from mobile element jockey-like [Saccoglossus kowalevskii] | 3.0e-33 |
Transcript
Transcript ID | aug_v2a.17866.t1 |
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Definition | - |
>aug_v2a.17866.t1 caaccattagtaattaacgagagttgttatcgtaacacgatccagggaaacgggctggcgcccctgtctcgctaagggat agacccgtgatgggggcgcgtcgtcaaactttagcacacaagcaacgaatgccaaccagtcaaggtggtactgataaata tgccttcaccgtatgatggtcatttcgttgacaataagcaaagtcactgtcgtccagtgatccgttcaagttcccagtcc gaaaatacagctcatgggagtcgcgaagaatttgcacgtgatgtttctaattcaaatgatttgtgtgatcatgtcaacca agcagaaaatgctttgactaagatgatagagtcattgactggagtcgtagcaaaattcgagaatttagttaatggtatgt catgcagtaatgaccctaaaagtaagcaagatggcacagatttgccacatgtttttgtttcgtcttctcaaaatgaagat catgtcgaaaagctctctagtaaagactctcctcaaaatgttgatgagcgcgttgatccaattgaccccgttgtttgcaa ggacgaagtgcatttgattaatcaaaacagtcctgttcaaaacagtgtatgttacaatcaaggaaaggaaattgattcaa gtgttgttttgcataaagtagttgaagttgatcctcaagtgtttgaagtcgccaatgtcgaagaaagcgatgtggttttg aaggacgcacaaatagatgtgtatgatgttttggaccacgatgatgtcaagattactgaatttgttgttaataattccat aattgctggtacgcatttgaccaaaaatgttacccgcgaagtctcgcctattgctgccaacaaagaaaccaatcatggcg atattgtgtcaagtgagcagacacagttcttaagcggaattaattctccattccatacaaaggattccacgatttccatt gatatcgcacatttgaatttccgagcgttgatagatacaggtgctgccgttactgcagtaagtgctcgcgtttggcaaag gtgtgcaagtaacataagccttaatttaggaccaccgaatcacgactccataacaacagtagatgggtgtttgcttaagg taataggtagagtgatgttgccgtttgcaatcgatgctaacatttttccttttgaggctcatgtgattcaagatttgact tccaatgtgatcttaggaaggaacttcttcgaaaaattttgtgctaaaattgattttgatgagggtatgatacgatttaa acatggggaagacccattgccttttgattcagatccggttactatcaattatgattgctgtcctgaatttgtttgttctg tgcatgctgacacagccttcgccattccaccacagtcagaaatcatagtgctcggtagattgaatgcagaattgcccttg aagaaaactgtctgcggtttagtagtgccacgaaacgatttgcctcaccgttactcaatttttggagcgtcagagcttgt caaggtcaccgaggatggcactcttccggttagaatggttaacccgtttgctcgtccagttaaaatatttcgcaaaacaa gactgattttaaaagcgtagaggatagaattgaaacattccagctcagcgaggcacgacaggaatttacttattcgttta agactaggaagaaacattcacaagccgattattctgagttccctgatttatccgacagcgttctcagtgaagctgacaaa attaaattcggtgacttattccagtcctaccgtgatgtttttgcttttacagatgacgaacttggtaaaacttctctcgt ccaacacgtaatagacacaggtgatgcactgcctattaagcaacggccgtatcgaaccaggcctaagtgtaaacaagaga ttgatcgccaagtagaagatatgctccaaaagggaataattagagaatccgtttctccatggagttcacccgtagttttc gtcaagaaaaaggatggtagttttcgtttttgtgtcgatttaaggaaagttaatgcagttacgaggaaagatagttttcc tatgcctttagtgtctgatactcttgatgctttgagtggaactaagtatttttctacacttgacttaaaatcgggttatt ggcaaattgaaatgcatccatagtcgcgagaaaaaacagctttcgttacacacnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctagtcgatgaaattatcgcaaggcatggttctccaagg gttttgctttcagacagagggactaactttttctctaggcttgtagcggaggtgtgcaaaattttccaaattcagaaagt gaacacatctagttatcacccgcaaacagacggacttgttgaaagattcaattcaactctttgtcaatcactttctatat acgtagccaagaataaaaaatattgggacgatttcatcccactcattttatttgcgcatcgaacttcgatttcagaagct ataggcgattctccattctattgtctgtatggtcgtgagccacgccttcctgttgatgttaaatttctgccaccagctgc cgacgatctctcaacttcagttttagatcatcgaaagcgtattgtcgaaaaagtagaattggctcagaatcttgctcgtg aaaatatacagcgttcacagcagaaaatgaaagagtactacgatcgtaatgcaagtcaaccacttttcgaaatcggacaa cgtgtttgggtttacacaccaaaaacgaagaagggcctatcaaagaaactcctttataattggtttggtccgtacagaat cgtcgaacaagcgtctcctgttcattatcggttgcgttctaaaaacaacaagaaggttactttcgctgttcatgctaata gaatgaaacctattgtcgatcctgctttaagaccaattgaaccaccgattgatgatgacccgagtgaaccctacctagat gaggcagacattcctgctgactatttcgaagttagcgagtcaagcggccgtgataacgatacgaatgtcactgccgagaa gcacgatcgtgttcgccatcacattcacaagaagctctcgagagctcaaatcaacaattggatgacgaccagatcgttat tgataatcaatcaatttttgctgctgagagaattctcaagaaacgtaaaagaaaaggcaaattgcaatataaggtcaaat ggctcggctatcccgaagatcaatcaacctgggaagcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtatttgtttc ttttgggtgatttccctacttttgcagcatcgaggacgatgcttaatgcaacgaggggggtatgttgaatagttaattta ttatgcttcgcgtaagctttaggaatttgctggcacgtgatgcgttcaaggtggtccctcttgaattagccatgtctagt tttttggtttgtcttttctaggtggtcctccttgagtgtaccacgtctagtaatattccagtattatccaaagtccaata gagcgacaaaacgttgttataaataagtgtgtataactagttagagggagttagttggagttgagactagaggtaacaac aagggttgtaagttgaagcaaatacaagtgatatcagtacgcagtgctggtgttgcttttaaagtaattcagagtcccga tacctctcgctgtagcgggccaggtcaacacacgttacgcccaatttacataaacgtaaggctagcataaagctttgctt tacggactgtaaatctaccgtaaggctgtgtaaatgagaactttacgctagccatagttacatttaaaggcggctaaaag aagtctcattacacaaactttacgcagacgcgttacggtagcgtaaaggttgacttgacataccgtaaatgtagcgtaaa gtttagtaaatgagaactttacgctagctttaagtaactagtacaccaacttaaatttgattgttcgtgctgtgattcta ctgccaatttgcttcagatcatcttggagttgctttccttattaatacccaagtcaaaagagagcgtgacgattgtaaac gcaaacgatagtaaacgcaaacttttatgcgcttaggccttccgtccacacgaggacgatgaaaacactcaccgtaaacg cataaattcgaaaacgcactccaaagtggatacatttgaaaacgctacgtaaacgatgatcgtctacgtgtggaggcgga gataaaaatatgcgtttactatcgtttacgtttacaatcgtcttcgtgtggacgtagcctacaaccgcgtgctcttaagt atcaggaacatgaaacatggcactctctgacacgtcacgttctgatctcggacacgctgagtgtcgagcaatttcacgaa attacttacttcacgcagcttattgatacctttgcgcagtgcgtaaagcagcgtacagatgcgttgtggatatctttaca gagtgcataaagaagcgttaagatgggttaatgatacctgtacaaagtccgaaaagaagcccaaagacgcgataataatt ataccggcgtttatagctgtttatctgacttgaagctttctttacgcgtcgtcaagttcgctgataccttcttccgtaag aagcactcattatcacagggaacatttttcaagtcagctctgttttcagcaagtggagccttcattgctctcatttatga tgcaaaaggacaattcagtcgtatttactttgtcaactcatataatgttcccttacactaggtataacataatctccaca tcacagtatacattagtataaggatacggacgtatactgatcattataaagaccttacacatatacttcagtatacatca gtatccctttccgcccacattatctatactggttcattatacctccttatacatgccattttatgcagtgttgttcgcta tgcgtacgactttgagaaagctaattttgatgcgctgagacaggtactttcagttacttctctggacatggggtttgata acagtgccggtaaaatctatcccatgcagcatggttttgtcaaaggtcgctccacaatcactcagctcttagatacggta catcggattgtcagaacaatcgaccagggtgaacaaactgatgtcgccttcctggatttttgcaaggcgtttgattcagt atctcatgcacacctagtcagaaagctggatcagtctggaattaagggaccattgttacactggttctcaagttaccttg acaagaggctgcagcgagtagtaattgatggcaaaagctccgattggttacctgttacctcagtagtcccacagggttct ctccttgggcctgatttatttgtgttgttcattaacgatatgccgaatgcgttatctcactcaagcacattggctttatt tgctgatgatgctaagtgcttctgcgctgtaaggtcttatactgactgtgctttgctacaagacgacattgaaaactggt tgactggagtaacaactggaaactggacttcaatgttgagaaatgctcactctgcacagtatcaaggaagcgcaacccca taatttgtaactacaacatgggtggcaaggttcttagtagg |
Protein
Protein ID | aug_v2a.17866.t1 |
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Definition | - |
>aug_v2a.17866.t1 MPSPYDGHFVDNKQSHCRPVIRSSSQSENTAHGSREEFARDVSNSNDLCDHVNQAENALTKMIESLTGVVAKFENLVNGM SCSNDPKSKQDGTDLPHVFVSSSQNEDHVEKLSSKDSPQNVDERVDPIDPVVCKDEVHLINQNSPVQNSVCYNQGKEIDS SVVLHKVVEVDPQVFEVANVEESDVVLKDAQIDVYDVLDHDDVKITEFVVNNSIIAGTHLTKNVTREVSPIAANKETNHG DIVSSEQTQFLSGINSPFHTKDSTISIDIAHLNFRALIDTGAAVTAVSARVWQRCASNISLNLGPPNHDSITTVDGCLLK VIGRVMLPFAIDANIFPFEAHVIQDLTSNVILGRNFFEKFCAKIDFDEGMIRFKHGEDPLPFDSDPVTINYDCCPEFVCS VHADTAFAIPPQSEIIVLEAIGDSPFYCLYGREPRLPVDVKFLPPAADDLSTSVLDHRKRIVEKVELAQNLARENIQRSQ QKMKEYYDRNASQPLFEIGQRVWVYTPKTKKGLSKKLLYNWFGPYRIVEQASPVHYRLRSKNNKKVTFAVHANRMKPIVD PALRPIEPPIDDDPSEPYLDEADIPADYFEVSESSGRDNDTNVTAEKHDRVRHHIHKKLSRAQINNWMTTRSLLIINQFL LLREFSRNVKEKANCNISVVRYAYDFEKANFDALRQVLSVTSLDMGFDNSAGKIYPMQHGFVKGRSTITQLLDTVHRIVR TIDQGEQTDVAFLDFCKAFDSVSHAHLVRKLDQSGIKGPLLHWFSSYLDKRLQRVVIDGKSSDWLPVTSVVPQGSLLGPD LFVLFINDMPNALSHSSTLALFADDAKCFCAVRSYTDCALLQDDIENWLTGVTTGNWTSMLRNAHSAQYQGSATP* |