Gene
Gene Model ID | aug_v2a.20326 |
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Locus | scaf12528 : 11089 ... 14185 : - |
To GenomeBrowser | scaf12528:11089..14185 |
Genes list of scaffold | scaf12528 |
Manual annotation
Study field | Retrovirus |
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Gene name | Adi-Retrovirus-related 2-17 |
Description | DNA sequence of this gene model showed similarity with that of Adi-Retrovirus-related 2-1. This gene model contains RVP domain. |
mRNA evidence |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
aug_v2a.20326.t1 | gi|390337074|ref|XP_785151.3| | 3.0e-34 | |
aug_v2a.20326.t1 | gi|195357872|ref|XP_002045134.1| | GM19302 [Drosophila sechellia] | 7.0e-31 |
aug_v2a.20326.t1 | gi|195357037|ref|XP_002044921.1| | GM11154 [Drosophila sechellia] | 3.0e-30 |
aug_v2a.20326.t1 | gi|658880529|ref|XP_008423203.1| | PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103474179 [Poecilia reticulata] | 6.0e-30 |
Transcript
Transcript ID | aug_v2a.20326.t1 |
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Definition | - |
>aug_v2a.20326.t1 aaatcgactgaagtcgccactcaaagtgagagagcgaaagttgacccacagtctagtgattgtgcttatcagaagggaaa cattgatacatctgttaggtgaatggacagggtgagttttcagttgaagtctagtgattttattgtttcagtaggtattg cgaatttcaaatttcaagctttgttagacacaggcgctgccgttactgcagtgagtgcgcgcatttcgagggaatattta attgtttttcaccctgatctgaatccgcccgcttgcggtgctgtcacaacactagatggccgcgaactggacactttggg aacgctagttttgacttttgaaattggcgatgatttttttcctgtgaaggctcatatggtagaaggactggcttttgatg tgattattggaagggattttctcaaagggttttgctatggaatcgattttatgaataacgtagttgaatttgtgcatgct gacgatccgcttcctttttattttagtcaccttgatgatgatccctatgtagatgattcagaactggatagttccgtgca tgccgactattctttcacgataccgccacgatctgaaaagatcgtttctggcaaattgaaaactacgccagtgaatggac agaatggagacgcttgtggcatagttataccaaggtctgacctgcctcaccgttattcaattttaggcgctgcagagatt gttaaggtttcagagaatggcatgattccgatcagagtagtcaatccgtcagttaaggtattccacgagactaggctagg cgatttttcgagcgtcgaagatcaagttgagacatttgagttgaatgaatttccccaggaagtcttatccgcgatatttg acggtcaaatgaaaaacgaattgccttatcacgattattcagatttacctgatttgtcagacagcattttgaacgatgat gatagaattaagttttgtgagttatttcggtgctatcgcgacgtttttgctctcgcggatgagcagctaggtaaaacttc tcccgttcaacacgtgattgacacaggcgatgctatgcctattaagcaaagaccatatcgaaccagtcctcggtgtaaac aagaaattgatcgtcaggtggatgacatgctccaaaaaggaataattagggaatccgtttcagttctccttggagttcac cggtagttctcgtcaagaaaaagaatggtagttttcgtttttgtacagatttgaggaaagagaatgcagttacaaggaat gatagttttcctatgcctttggtgtccgatactcttgatgctttgaatggaactaagtatttttctactcttgacttaaa atggggttattggtacattgaaatgcacccagagtctcgagaaaaaaacagcttccgtgacacacaacggtcttcacgaa tttaatgtcatgccgtttggtcttaccaattctggcgctagttttcagcgtctcatgggccatatacttcgaggactaga atacagatttgctttgatttatatcgatgatattgtcatcttttccaaatcaatcaaagcgcatttgacccacttggagg aagtttttagaagactgcgtgacgcaaatgtgaaattgaacccggagaagtgcagctttgtcaaacaacgaattgtgtat ctaggtcatgttgtgactccagagggtattttccctgaccctagtaaagtagaagtggtgaagaattttacgacaccagc gagtcttaaaaaattgaagagttttctgggtttagctaattattaccagcgcttcatcaaaggtttctcagaaattgcaa gtccactttatgcattaacgaagaagggcgttataagtttttttggtctgagtcatgtgccgttgcatttgatcgattga agcgtgctttgatttcagctcctgttttggcgtttccccatttcgaggagcagtttttactttatgttgatgctagttca accgctatagggctcgctctcgcacaagttcagaacggtaaagaggtggtaatcgcttataatggaagaggccttaacca ggcagaacgtaattacacaacaacagagagagaagctctcgctttagtcgagggtatcaaaaaattccagctgtatttac atgatcgcaaattcgtagtgtcagagttaatgtacacagatcatagttctcttcgttggcttatgaacgttaaagatgct actggtcgattagcgagatgggctttgttgcttcagcaatacaatctcgatatcattcaccgtccaggttgccagaatgg taacgctgatgctttatcaaggcgcccatatccaaacaccagcctgaacgccttacagcagtgtgatcctgagattgatg aggtccgtgaaaaacagcgcaaagatccagagttaagtgaaataatagactatatccagcatgacagtttgcccagcaac gacgcgaaagcctggagaattctgctaagaagcgattgtttttacatcggtcaagatggtcaaccacttttcgaaatcgg acaacgtgtttgggtttacacgccaaaaacaaagaagggcctatcaaagaagttgttgtataattggtttggtccatata gaactgttgagcagtcgtctcccgttcattaccgtttgcgttctaaaagtaataagaaagtaactttcgctgtccatgcg aatcgaatgaagccttttgtcaatcctgctttgggaccattcgaaccaccgaaaaacgatgacccgagtgagccgtattt agatgagacattcctgaagactctttccaacctagcgagtcaaataaccaaaacagcgacacgagcgttacagttgaaaa taacacgcgtacgcaaatcaattcgcaagggcagcccgatgccccagatcaacgaaaggacgataatcagttcgtaattg acaatcaaacaatatttgccgctgagaaaattctcaaacgtcgcaagagaaagggtaaacttcagtaaaaagtcaaatag cttaattatcccataagtcagtcaacctgggagcctgaagaaaacattttggacaga |
Protein
Protein ID | aug_v2a.20326.t1 |
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Definition | - |
>aug_v2a.20326.t1 MDRVSFQLKSSDFIVSVGIANFKFQALLDTGAAVTAVSARISREYLIVFHPDLNPPACGAVTTLDGRELDTLGTLVLTFE IGDDFFPVKAHMVEGLAFDVIIGRDFLKGFCYGIDFMNNVVEFVHADDPLPFYFSHLDDDPYVDDSELDSSVHADYSFTI PPRSEKIVSGKLKTTPVNGQNGDACGIVIPRSDLPHRYSILGAAEIVKVSENGMIPIRVVNPSVKVFHETRLGDFSSVED QVETFELNEFPQEVLSAIFDGQMKNELPYHDYSDLPDLSDSILNDDDRIKFCELFRCYRDVFALADEQLAPVLAFPHFEE QFLLYVDASSTAIGLALAQVQNGKEVVIAYNGRGLNQAERNYTTTEREALALVEGIKKFQLYLHDRKFVVSELMYTDHSS LRWLMNVKDATGRLARWALLLQQYNLDIIHRPGCQNGNADALSRRPYPNTSLNALQQCDPEIDEVREKQRKDPELSEIID YIQHDSLPSNDAKAWRILLRSDCFYIGQDGQPLFEIGQRVWVYTPKTKKGLSKKLLYNWFGPYRTVEQSSPVHYRLRSKS NKKVTFAVHANRMKPFVNPALGPFEPPKNDDPSEPYLDETFLKTLSNLASQITKTATRALQLKITRVRKSIRKGSPMPQI NERTIISS* |