Gene
Gene Model ID | aug_v2a.20438 |
---|---|
Locus | scaf12688 : 629 ... 4225 : - |
To GenomeBrowser | scaf12688:629..4225 |
Genes list of scaffold | scaf12688 |
Manual annotation
Study field | Retrovirus |
---|---|
Gene name | Adi-Retrovirus-related 60 |
Description | This gene model contains rve and RVT_2 domains. |
mRNA evidence |
Annotation by Blast2GO
Annotation | GO |
---|---|
integrase core domain protein | GO:0005488 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
aug_v2a.20438.t1 | gi|645264624|ref|XP_008237766.1| | PREDICTED: uncharacterized protein LOC103336496 [Prunus mume] | 0.0 |
aug_v2a.20438.t1 | gi|590568887|ref|XP_007010924.1| | Copia-like retrotransposable element, putative [Theobroma cacao] | 0.0 |
aug_v2a.20438.t1 | gi|590608106|ref|XP_007021177.1| | Uncharacterized protein TCM_031224 [Theobroma cacao] | 0.0 |
Transcript
Transcript ID | aug_v2a.20438.t1 |
---|---|
Definition | - |
>aug_v2a.20438.t1 tagtagaaaaccgctcaggaaatcaccgtagtttgtataatggcattttgccaaatacgtgaacttgattgaaactgtat atagatcacccgcctttatttgagcatataaaagaaagcattatattcaataaaaatctgttttgggactcctacttgtg tgcgatgcatatgtccttattgcgaacatgacgacatcagcaaacttaacaggttatggacccaggagaacactcgtgtt tgacggagatgaaagcaagtacgagccatgggaggtgaaatttcttggttacatgcgcctccagaagctgtatgacgtgg ttatccagaaagaaggtgaaacgtcaggccccaacgcagaaacaagggcaagtgcgtttgctgaattggtccagtgtttg gacaacagaagcctttctttagtgataagagaagcaaacaatgacggtagagaagcacttaaggttctgagagagcacta ccaagggaaaggaaagcctcgaatcattgccttgtacactgaggtgacttcgcttcacatgggtgagggcgaaacaacca cagattatatcattagggctgagacagcggcgacttctctcaaagcagctggctaggttataagcgacggcctgttggtc gctatgacgctcaaaggcttgcccaccaactacaagacgttcagtactgtggtcatgcaaagggaaacccaaattacgtt ttccgatttcaaggtagctctccgtaaccacgaggagaatgaacggtgctgcagtaaagacaagggtggaaatatggatg gcattatggctgcaacgaacggcgcccacaagccaaacaagttcatgggaaagtgcttcaaatgtggacgaaaagggcac aaaagtgtcgactgtttttcaaacaaagtcatagacaagtggtgccagagatgcagaaataactcccacaataccaagga ttgccgaaaagtgaactatgactcagcaagagtcgcactgcaacgtaaagaacaaagattgaacaatgactctagtaatc atagttttatctttaccgttaaggttgaggaaagtagaggtgagataactccaaatttactttaagatactggtgctaca agtcatataattaatgataagtctaagtttgtagattttgatagcaaatttgaccctagcactcattttattgagttagc ggatgggagtagggcaaatgtggttttaggaaagggaaacgcaaaagttaagctttttgacgtaaatggtattttgcagg atgtggtcttaaacaacgccctatacaacccatcgtacaaccaaaatattttttctgtccccgcagccatcgataaagga gctagcataactttagataaggatttcaaaactttcaaggcaccaaatggcacatcgtttgatatacaacaacacggtcg tttgttctatttgaatagtgtttctttcaaaaataacgccaccacactaatgcactggcatagaattatggggcactgca atttcaatgatttgcaaaaactccaaaatgttgttgagggtatgaaaattgttgatgatcaacagcacgagtgcgctatc tgcgcgcaagaaaaaatgtgccagtcccggaaccgcaaaccggacgagaaaccaaaagaacctttagaatttgttcatta agaattggctggcccaatcgatccggtagctaaggatggctacaagtatgcgctctcattcgtagacgattacactcgta taaacatagtgtattttctcaagcagaaaagtgatactttggaagcaacagaaaagtttttgtctgacattgcaccattc ggaaaaatcaaacgccttcggagcgacaacggatcggaattcacaagcaaaaattttaaatctttgctgcgcaaaaatgc aataaaacacgaaatgagcgctcggtattccccgcaccaaaatggcatggtaaaaagggcttggcgaagtctatttgaca tggcgcattgtttattgcttgaggcaaatttgcccaaacaactctggccctacacggtatcagctttggcatacatcaca aatcgatgttacaattccagattaggtaagacaccttttgaggcgctaacagggaagagaccgaacattgggaacatgca cgtttttggctctacatgtttcagggaaagccctgcatacctagtttattaccccgaagaaaacaaggtcgaaagggtac gatgcgtaaaattccttgagcaaagattttacccatcacaaatgggagaagaggaaccgtttaagcccaccccagaacaa agagttgtaacggcagaaaatactgaacaaggtgaccaaacagaacaggacgcaaaccctactgaaatatcgacagcagg catgagcgggcaaattcaaggtgccccactagggtacgtgacatgcccaaacatttggacgagtatgttatagagaaact actatactgtagactactgctacagggttaccaacataccgtctaagtacaatgaggctgtgaactcgcaagaggcgagc aaatggaaaaaggccatgggagaagaggtcgcaaccctaattgacaatgacacatacaatctagtaacaccaccagaagg cagacaaatagtggggggcaaatgggtctttgcagttaaaaccggaccaaatggcgaagaatcacacaaagcgcgttacg tcgcaaagggttactcacaaattgctgaaattgattaccaggagacctttgcgccaacagctcgcatgagttcagttcgg atgcttacgcaacgtgcagtccaaaataacatgatcactcatcaaatggatgtgaaaacggcttacctaaatgcgccaat tgattgtgacatttacatggagcaaccagaaggttttaagaaagtaggcaaaaatggcgagaaattagtgtgcaaattaa agaattcactttatggtctcaaacaaagtgggagaaattggaacaacatgttgcatacctttttgtgcagtgaaaatttt tcacagtcacatgctgatccatgtgtttacataagaaattccgacaccgaaggctgcgtcatcttaattgtttgggtcga caatatcatcatatcgacgaccagttcaaacttgttagagagcgtaaaagagtctctctgtcaaaaattcaaaatgaaag atcttggcgaattatcatggtttttgggaacccaatttaaatgtaatgagactaccattgaaatgagtcaaagtcaatac attgccaaagttttgtccaaatttgagatgagcgattgtatgccaaaatcaattccatgcaccgttggggtagagaaaga gtttgattacaattcacgggaattagatgaccctaggttgtatcgagcaattgctggaagcctgatttatgaaatgacat gtacaagaccagatttgtgctatattgtcactaagctttcacagaacatggccaaacctactgagacagatcttaaccag gccaagtatgtactaagatatttaaaaggcacacgggaacaatgcctcaaattcgagaaatcggagtcaccattaag |
Protein
Protein ID | aug_v2a.20438.t1 |
---|---|
Definition | - |
>aug_v2a.20438.t1 MTTSANLTGYGPRRTLVFDGDESKYEPWEVKFLGYMRLQKLYDVVIQKEGETSGPNAETRASAFAELVQCLDNRSLSLVI REANNDGREALKVLREHYQGKGKPRIIALYTEVTSLHMELAGPIDPVAKDGYKYALSFVDDYTRINIVYFLKQKSDTLEA TEKFLSDIAPFGKIKRLRSDNGSEFTSKNFKSLLRKNAIKHEMSARYSPHQNGMVKRAWRSLFDMAHCLLLEANLPKQLW PYTVSALAYITNRCYNSRLGKTPFEALTGKRPNIGNMHVFGSTCFRESPAYLVYYPEENKVERVRCVKFLEQRFYPSQMG EEEPFKPTPEQRVVTAENTEQGDQTEQDANPTEISTAGMSGQIQGAPLGVTNIPSKYNEAVNSQEASKWKKAMGEEVATL IDNDTYNLVTPPEGRQIVGGKWVFAVKTGPNGEESHKARYVAKGYSQIAEIDYQETFAPTARMSSVRMLTQRAVQNNMIT HQMDVKTAYLNAPIDCDIYMEQPEGFKKVGKNGEKLVCKLKNSLYGLKQSGRNWNNMLHTFLCSENFSQSHADPCVYIRN SDTEGCVILIVWVDNIIISTTSSNLLESVKESLCQKFKMKDLGELSWFLGTQFKCNETTIEMSQSQYIAKVLSKFEMSDC MPKSIPCTVGVEKEFDYNSRELDDPRLYRAIAGSLIYEMTCTRPDLCYIVTKLSQNMAKPTETDLNQAKYVLRYLKGTRE QCLKFEKSESPL |