Gene
Gene Model ID | aug_v2a.20672 |
---|---|
Locus | scaf12983 : 6993 ... 10005 : - |
To GenomeBrowser | scaf12983:6993..10005 |
Genes list of scaffold | scaf12983 |
Manual annotation
Study field | Retrovirus |
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Gene name | Adi-Retrovirus-related 47-1 |
Description | This gene model contains RVP and rve domains. |
mRNA evidence |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
aug_v2a.20672.t1 | gi|597800882|ref|XP_007241819.1| | PREDICTED: uncharacterized protein LOC103033799 [Astyanax mexicanus] | 0.0 |
aug_v2a.20672.t1 | gi|339258032|ref|XP_003369202.1| | Pao retrotransposon peptidase family protein [Trichinella spiralis] | 0.0 |
aug_v2a.20672.t1 | gi|339256020|ref|XP_003370753.1| | retrovirus-related Pol polyprotein from transposon 412 [Trichinella spiralis] | 0.0 |
aug_v2a.20672.t1 | gi|514695873|ref|XP_004995507.1| | hypothetical protein PTSG_12079 [Salpingoeca rosetta] | 0.0 |
Transcript
Transcript ID | aug_v2a.20672.t1 |
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Definition | - |
>aug_v2a.20672.t1 gggcccccacctgaagtaaacaatgacatgcactgtgatatcgatagactagtaaatcaccaaacagttccgattatgct tgatacaggtgctaccgtgagtgtggtgagtgaggaattgtggaggaagtgtggaggatattcaagccttttacctgtgg ctgcaactctaacagctgcgaatgacaaccaaattgaagttcagggtgaagcagagctgaggcctcgcatagcagaattt gatatcctttggacagtgattgttgctcgcggattatcacatgactgtctgcttggtactgactttttccaccagtacaa gtgcaaaatttgctatgatacgggaacattcatggctggctcgactgaagttcctattcgttaccaaaaagttaaaccag ttgtgtctagggtggttttgcagtctgacactgagatggaaccggggactgagcgaattattggaggacggttggagagt ggatttgaaagaaactctgggagcccgggggtaagtgaaggaatgagaacggtgtgaaaaaacaaggagatctgtgtcgg gcattctcttgtagttccgaaggatggagatggtcctgtacgtgttgctaactttacagacacaccaatcaagcagtcaa ttggtcacgtaattggattctaccacccacttagtagtttgaagggtgagaccacttcaattcaagtgggtgtgaacgta tcacaggactcccagcaaaagtgttcgaaccagactggggataccgaaagcagaggaaaggaatcagaggagatgggcgt ggaagctgaatattcagtttgacaagtctgacatttcagaaacccaacaagaacgtttcctgtcaatggttgatcaattt tcagatatttttgcagttgataactctgatttaggaaagaccactttgagtgaacacacaattgacactggcgcgtccca accaataaaacaaccttccaggcgtacaccaccccatcagagggaaattattgaccggcagctagacgatttgttgaaac atggcagaattgagccctcacagagtgcttggagtagccctgtggttctcgctcgtaagcatgatgggacatttcgcatg tgcgtagattatcgcaggttaaaccagtgtactgtgaaggatgcacagccattgcctaggtcggatgatgtattggaagc agtaggtggggctcgttggttctcatgcctagacctcgcatcaggttattggcaaatgccggtagcagccaaagatcgac caaagactgcattttccactcacagaggctagtttcagtggaaagtgatgccctttggattaaccaacgggccagctagc tttacccggcttatgaacctggccttagacagactctcgtggatttactgtttggtttaccttgatgacattatcgtgtg gtctgcttcttttgatgaacatttgcatcgcctgcgtcaagtttttgacagaattagaaaggccggactgaagttgaaac ccgctaaatgtcagttcttgaagaagctagtaactttcttgggacacgttgtgtcgatccagggcattgagactgaccca gagaaaactagagctgtagatgagtggcccactcctgagaatttagtggaatttcagagttttcttggccttgcaagtta atacaggcggttcattgctgatcctttcattattgccgaacctctatacagactaaccaagaaaggaataaggttcctgt ggggccccaagcagaggagggcgtttgaagagctgaagcactgcctcacaagtgccccatccctcgcctacccagacttc tcacccggtgcagggacattcgtactggacactgatgccagccagcgacttggaatcggtgctgttctttctcaagtcca gtccgatggaaccgagagggtagtggcctatggtagccgttctttaaatgagcacgaaaggaactattgtaccacgcgac tagaaatgttagctctggttacatatgtcgaccattttcgctactacctggccgggtgcaaatttctattgcggactgat caccactcattgaaatggctgatgtcattccgagagccagaaggccagatggcacgatggctcgaacgacttcaagaata cgacttcgaggtggagcatcgacctggcaagtcacattgcaacgcggatgcaatgtcccgaaagccgaggcgtttccatg gtgactgtccatcttgcggccaaactgggctattgcgagcaagggtttctacgctggcacacgactacgccaaagaggaa gaagacgtaaatcttgggaatccgtggtcttccaatgctatctctcaggctcaaaggaaagacccagatattgggccagt tctggagcagtatctgagggaaaggaagaagccatgtatgcatgaattacagtccttaagcagcacttcaagagcggtgt gggctcagtgtgaacttatggaggttgtggatggtgtgctttgtattcgctctgagaagagtagttcaccacagaaacac cgtgttgttttgccagggagtcttatccagtcctcactcaaagaatgtcatgacgctttggcaggaggtcatcttgggcg tgagaaaactctccataaaatgaaaattcgtttctggcgtccaaacagaagcgtcaaggagtattgcaatgactgcctga cttgcgccaaaagcaaaccacgtaggaaacccaaggcaccgttacagcccatcccttctggataccccatgcagcggctg cacatagacatagtgggaccactaccgcgaaccaaaagggggagccgtttcatcctgactttgcaatgtagctttactaa atgggcggaggcacaagcgatcccgaatcaaaaggcttctacctgtgctaaggttctcgttaagaactggatctgtaggt tcggagttccagacagcatgcaatagtaataataataataatgagtctttatt |
Protein
Protein ID | aug_v2a.20672.t1 |
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Definition | - |
>aug_v2a.20672.t1 MLDTGATVSVVSEELWRKCGGYSSLLPVAATLTAANDNQIEVQGEAELRPRIAEFDILWTVIVARGLSHDCLLGTDFFHQ YKCKICYDTGTFMAGSTEVPIRYQKVKPVVSRVVLQSDTEMEPGTERIIGGRLESGFERNSGSPGDGDGPVRVANFTDTP IKQSIGHVIGFYHPLSSLKGKTTLSEHTIDTGASQPIKQPSRRTPPHQREIIDRQLDDLLKHGRIEPSQSAWSSPVVLAR KHDGTFRMCVDYRRLTKKGIRFLWGPKQRRAFEELKHCLTSAPSLAYPDFSPGAGTFVLDTDASQRLGIGAVLSQVQSDG TERVVAYGSRSLNEHERNYCTTRLEMLALVTYVDHFRYYLAGCKFLLRTDHHSLKWLMSFREPEGQMARWLERLQEYDFE VEHRPGKSHCNADAMSRKPRRFHGDCPSCGQTGLLRARVSTLAHDYAKEEEDVNLGNPWSSNAISQAQRKDPDIGPVLEQ YLRERKKPCMHELQSLSSTSRAVWAQCELMEVVDGVLCIRSEKSSSPQKHRVVLPGSLIQSSLKECHDALAGGHLGREKT LHKMKIRFWRPNRSVKEYCNDCLTCAKSKPRRKPKAPLQPIPSGYPMQRLHIDIVGPLPRTKRGSRFILTLQCSFTKWAE AQAIPNQKASTCAKVLVKNWICRFGVPDSMQ* |