Gene
Gene Model ID | aug_v2a.21197 |
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Locus | scaf13691 : 1 ... 2166 : - |
To GenomeBrowser | scaf13691:1..2166 |
Genes list of scaffold | scaf13691 |
Manual annotation
Study field | Transcription Factor |
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Gene name | Adi-USF2a |
Description | This gene model showed similarity with Homo sapiens Basic helix-loop-helix domain-containing protein KIAA2018. Tentatively named thus based on molecular phylogenetic analyses (NJ and ML). aug_EST_assem_12923 was used for the analyses. Adi-USF2a and Adi-USF2b seems to be haplotype and therefore are regarded as a single gene in the paper. |
mRNA evidence | aug_EST_assem_12923 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
aug_v2a.21197.t1 | gi|642919431|ref|XP_974456.3| | PREDICTED: upstream stimulatory factor 2 [Tribolium castaneum] | 2.0e-10 |
aug_v2a.21197.t1 | gi|657743619|ref|XP_008306968.1| | PREDICTED: upstream stimulatory factor 1 isoform X1 [Cynoglossus semilaevis] | 1.0e-09 |
aug_v2a.21197.t1 | gi|657743621|ref|XP_008306969.1| | PREDICTED: upstream stimulatory factor 1 isoform X2 [Cynoglossus semilaevis] | 2.0e-09 |
aug_v2a.21197.t1 | gi|742243603|ref|XP_010863324.1| | PREDICTED: upstream stimulatory factor 1-like isoform X8 [Esox lucius] | 3.0e-09 |
aug_v2a.21197.t1 | gi|742243597|ref|XP_010863320.1| | PREDICTED: upstream stimulatory factor 1-like isoform X5 [Esox lucius] | 3.0e-09 |
Transcript
Transcript ID | aug_v2a.21197.t1 |
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Definition | - |
>aug_v2a.21197.t1 tggaacgcaggagaaaagacaaaataaacaaatggattttgaaactggcacaagctgtgccacagtgtaaatggggaaag caggtaagaaatacagtaaatttgggacggttagaccgtttttctgtaacatctccattgtggttgtgtccttctaaaca tacaggcactgacttagacttaactggtgttagtcattttttttctgcaaactaaagtagagtggatgctattagtagta gataaaatatcagcaggaaatctgtatgagtatttacagtggggggccgaaggcaagccattgttaacgcccataaaaac tggacattaatattttattgtacttgtgaaatgaaacaatatgagacatctgtatcaaaagttaatgaatactaattcgc tgagtagggctctgtatcaaaagttaatataactgattaataatttatcaactctagttgatttgtattggggtttacag aggtgcacatgtgactcaaataatgcccattgattggtcataactcttatgaattattaatgaattttacaagctaggtt acaaatgtagttatcatgacttttgtcctttgcttggtgattcataaaaattatcctcattttgacttttattgttgtgg tttccatgatcatcatcttcgtggcatgaataaaagtttaatatgtgtgttcagagaaaaaggacagtgttgtgcagaga agaggagaactgcttgtgtttatgaaaaacaagagcagcaaaggcagagggaagatgggtcggtgtagttggctatgggg ggaaggggtaggggatggccgatgtccctgggccagggcttgtagcttgaaggtagttatgaaagccttctggtttcttt agttttttctatctttcatgtgtcttcttttagagcaaaaatattgtacttgaaaaaactgtggaatacatcaatgaagt caatgatcagctaaaggaattgggcaattcacagcagagggagcaaaaacttggtgagagctgttgaaagtcaggtgatt ccgtataatgtagttgttaagttgattttattgatatgtagtgtgtcattgacatctaataagagacagcaagttaccta taaatccggcgagtgataaaagactgcactaagtacacgcgtgaaattcggagtacatgcgtgaaatttggagtacacgc gacccatggggaggggagggtgggtcgttgaaaatttatttcgccgctctcactcgtcgcttggcctcggagtttcacgc gtgtacctcgctcgctctcactctcatcactcaacgaaattcgagactactcgcagtcgagtgtaaataaaccaaacagg taaatatctgattttttttatcgtttctgcttgcagctcaagaggtccaacatctaaaaacacgacttggaaaagtcaca acagaaaataaagttttgaaggatttattgaagaaaaacaatgtcaccattccgacaaacattctcccgatgtcggattc aacttcggcgatgacaggccttgaacgagttaattcatctgttgctgtgacaatggtaaactcaaactcggaaacggtaa ctatggcaacatccaagaccttgcaggctgagattccagtgacagtaaagaccactcctgttgttaccatggttactcaa ttgccagtcgctacggcaactgttgctggagttcaatctagaaaagaatcagttgcgtatgttgcgccttttttcattgc aaataacccagtttccatagtaacaagtgcaacttgtctagttacaccagcggtaacttctgctatgtctgttactgctc cgattgcgcataatgctggcagcagccaacatagccacgttcagggacgcatgtccagttctgtaactttatcccacgta aatcaagggatttactctcagcttgcgaataatttgatttgttcatcgactccccaaccggttcaagctttacctgtgcc agtttgctcttcacaagtggcaccaagtccccaggcgggtttttcacaacacagtgttgcggcaatcatgaaagttgcgc ttcaacctggaacttcagtttctccagtcgctgtcgtagatgcttcttctctttccactccggctgtggcaactaatgca actgcc |
Protein
Protein ID | aug_v2a.21197.t1 |
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Definition | - |
>aug_v2a.21197.t1 ERRRKDKINKWILKLAQAVPQCKWGKQSKNIVLEKTVEYINEVNDQLKELGNSQQREQKLAQEVQHLKTRLGKVTTENKV LKDLLKKNNVTIPTNILPMSDSTSAMTGLERVNSSVAVTMVNSNSETVTMATSKTLQAEIPVTVKTTPVVTMVTQLPVAT ATVAGVQSRKESVAYVAPFFIANNPVSIVTSATCLVTPAVTSAMSVTAPIAHNAGSSQHSHVQGRMSSSVTLSHVNQGIY SQLANNLICSSTPQPVQALPVPVCSSQVAPSPQAGFSQHSVAAIMKVALQPGTSVSPVAVVDASSLSTPAVATNATA |