Gene
Gene Model ID | aug_v2a.21618 |
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Locus | scaf14226 : 8057 ... 19335 : - |
To GenomeBrowser | scaf14226:8057..19335 |
Genes list of scaffold | scaf14226 |
Manual annotation
Study field | Retrovirus |
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Gene name | Adi-Retrovirus-related 4-3 |
Description | DNA sequence of this gene model showed similarity with that of Adi-Retrovirus-related 4-1. This gene model contains PseudoU_synth_2 domain. |
mRNA evidence |
Annotation by Blast2GO
Annotation | GO |
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rna pseudouridylate synthase domain-containing protein 2 isoform x2 | GO:0009451 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
aug_v2a.21618.t1 | gi|156401575|ref|XP_001639366.1| | predicted protein [Nematostella vectensis] | 0.0 |
aug_v2a.21618.t1 | gi|196004434|ref|XP_002112084.1| | hypothetical protein TRIADDRAFT_1807 [Trichoplax adhaerens] | 0.0 |
aug_v2a.21618.t1 | gi|617429195|ref|XP_007561213.1| | PREDICTED: RNA pseudouridylate synthase domain-containing protein 2 isoform X2 [Poecilia formosa] | 0.0 |
aug_v2a.21618.t1 | gi|617429192|ref|XP_007561212.1| | PREDICTED: RNA pseudouridylate synthase domain-containing protein 2 isoform X1 [Poecilia formosa] | 0.0 |
aug_v2a.21618.t1 | gi|658916932|ref|XP_008398230.1| | PREDICTED: RNA pseudouridylate synthase domain-containing protein 2 isoform X2 [Poecilia reticulata] | 0.0 |
Transcript
Transcript ID | aug_v2a.21618.t1 |
---|---|
Definition | - |
>aug_v2a.21618.t1 actggcacgaagtatatactcttcgaattttcccttcgaccagatggaagtaaatcgtcagcgtgaaccggttataaaga attttctgtaagagcacacactcatcatggctgagcaggacagaaagcaggaagaaagcaaacgtgctatgaaaagaaga aagaaaatggaagctagaaaagagcaccaggttggaatttaaatttatttgcacgaaaattatcaatgatctataattaa gagccgagaaaaagtttatggtgagctcaattaggggaatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnctaaatctttcatggtggtaattcaacctttatcaactcgtttgataaaaccaaatttttgttttgacctctc ccatggatgcagcaccacggtttctttagaaactagaaattcatgaaaagttcaagcctgaaaggggattccaacctagt gtatagcactgcaccagcatcacagagggtaaggtaccctcagtatagaaaattaggtagtttgtttatatgatgtatta tgtttatatgatttgtgataaattggttattgtcatcattactgttattcggcaagtaaactcacatgaaagaaatgatg tttgcctttaccctgacctaatgtacattcttgttcattttcagaaaaagccaaacttgggaaatagcaaaaacccaggt tttgataggaaacgctttgaagaaactatatcttttgtggaaaatggtaaaatacttcacttcatagtattcaagtagta atttttatctgcagtttaaggtcttccactggtatagtattgaagagatagaacataaaaagtaactgactttcatgacc ctgaaaccagtgtacatcattatgcacactgatatcacggtggtggaagtcagtgtgcatgtgtataatagtattaaact attacattcacgaagtgtgccctcctgaattttcttattcaatgaattgaacctttttcttgtacctacaccttgacttg ttaatatttcaaaagttcagcatttaataagggatgcaattccaaaatttgaactgtttgtatgctgttaaccagaagaa acaaagcgtaggttttgggaaaattggcaattaaagtgaaggtgaagttcaaaccaatttgattgatttctaaattttct tttgtctcctattaaactttactgatatcagggttttaagacaaaaaaggagatcaggttaccgtatgtcatgttaccct gnnnnnnnnnnnnnnnnnnnnnnngtttctttagccctattttcatgtacagatcaatagtgctttacactgaataaaaa aaattaaaaccttacatatctaaatacaatttataatagaagttaatatccctaatgtgtgaatataatatatctaagtt attgattactaaaagcttcataaaataaaaacgttttaataacttttttaaatttatgtaaactcttaatcaatctaatt tcatgaggaagtctgttccataagcacggtgctgctgcctggaaagaccaagctccaattgtcttcagcatcttaccgta agggggctctaagtaaagaccatcattacattgaagacaacgagaagattttgatttaatagttaagaggctgttaatat ctgatggcactaaattatgaactgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagcctggattagaagtcaa tgtaactcatatagaataggagtaatgtgcgagtgctttccaacattcactagcagtcttaaggcagcattccttgtgca catactttaaatagctatctgttcctttgagacatcgtacaaaagaatgttacaataatctaacctattcgttgtaaacg catgaactaaagtatggagactgtcttcatgtaaatatttctcaatgcttctaatgttacgaagataaaagaatgcagag ttgcaaacattctgtaatactgtatgcttagacatgaataacatcattttgggtttttgaacaagatgatgttgatgggt ccatttgtctcagtaaacagtgactactatttccagcattggcaagatattctattaagaataggacaggaacaatattg taaatataacatttatcatgttgcttaacacttttagtaatttttaactcaaatatacttgtactatcacaagcattttt attctcattctattcaaggcttgaggcatgttcatccctattatttcacgttcaaaactcactgtaaaggacgctgggtg ggtcgtacactgattgaagtttttaaagaagaatttagatctgaaacacaagaatactatgtaagtatatgcacttggca atgttcaacattatttgttttgtgtttagcagtggaaggagactgtgatgaaaatactgcaagaatttttgttacattga aaggttctacttctgttaaggagccacatgagatgtttgcttgttctgacttcattatacggtttgtttcatattatttc agttctagaaatactaataggtcagaatgttttccagtaatcgttgcagcttttaagtctaccagtaggtgttgtttaat tacacttcatatcccatcatacacgtcagtcagctatcaaaagaacatgatccaccaaaaagagacagaaatttgtagtg agtatttgactttttatctacatataaggttaagtagttaagtagtcgtgaaataattcattttcataaaattctcatta ctttcttcatcaggataaagcaatctgtgttggaaaaataacaggtattgaaccaaaaagttataattatgctcaataaa atatttgttaatagtctttacaaagtttctaggaaattagaatcctgttgcaaatttcctgaagctctgcaatatttatt tggagagcaagggggaaaataattttcggctaatgctttaaccagctacactgaggtaactcagaattatgccagacagt gaagtcctcacaaacaaacaaaaacacttttcactagcttagggctattctctgctatttccgtgccattttgtgggttt actgtattgtcatgcatgaatattgaaataaagaaaaaagaagtacagtacatactctatggagagcattaaaagaggtg aatattaaaagttgtacatgaaagcaaaagtaaaagtcacttgtactttgaacacccagtggcaatagatgcatattcaa aaatgaatagcaaaaggggtggtgaaccagatgcgaccaaaatccagttgtagcaaactgaattccttggtctaatttga tacattaataagttacgtaaaatttcactgcttgaaaaatagaaagagcacatgtatagggaaataattcacattccatc tatgggtcattcctcagcagttttgacaaaattgcctcttaagattaattccagaggatgacctggtttactgctcagat tattgttgaagggtttaaggattgttaaaaggcaaaattttcccattattttttttcacaaattaacataaattgcccta gagaaaagaatacagtaaatgttgcggaaaggacatttcgatatctaattttgcaataatgtgaaagcatgtatttaaaa gaagaggtgtatggccagaaagtatttttgagaattattctttagcagttacctcagcttgatgtatatcccgtgatcct ttgtgttttgaaatgatcccaagaatgtcatccccgcaacattttgacattcttcaacaattttaattaatttgcaacaa gcaatggtattgcatggcttgattatatttaaacttgtgacaaggtgcaaatcttgttttattagaatggtgaataacta tttggggctccatattgttggtctagttgttgtggagacaacaattttgttgtggagatgacacgctcttctaaaggaaa aggttctaaaaaagtcatctttaacttaacataacattttttggttattaatcaacaatttagtattcatggctttgtta agtgtctaaatgtcatctctgcaacatgcaaaatactgtagaatgacccctatttgtttgcagtaaatggaagtcaggct actcaaggaacagttttaaaggataatgatgtaatatgtaacacagtgcacaggttagtgaagaacaacgtaattgatga aacaggttgaggattagtccttaaggatattcttttatcgttagtgtcattgaaaagaggattaagttaaaagaattaag ttaaaagaaaaaaaacagctgtcttgttgagactcacttcttaatttttttttgcctcttgtcgtgattttgtacaatgt cgttacgaaataagagaatgtgttctacagatggacatttttcaaggcatgtcgccaacatgtgtcttttatttaaaagc attacaacggaaataggttaatgttacacacgagaaagaaatcaatcgagacaaaagaggaaagcgacctgaacttcagt gagaataatttgtaagagagagaggttttgttgatccaaaaaatcagtttacgacacctcagacaaaaactggaccacct tctctctatacaagaaaactaatgtgagcaagaaaccaaaaaggtaataaaattttaccccgctgttttcctttttccat tttatactgtaataataatgatcataaaagtaataactattattgtttttagataaatattacaatagttgaccattttg tgtccattcctcagacatgagccaccagtcactgataatcctcttgaaattattgaattgactgatgacctggttgtact caataaaccatcttcaatccctgtaagttcatgctgaaaatgtaatagtaactctttgggttattgtggggctatgaccc cagacatggttttttggggttcatttcttttctttgtccttacacttttcagtgataattaactggaacactttaataat caactgaagtgttactaatgcaccctgttttatatgctaagttacacatccataaaagtaacttcactcacattcctaac accaataatttcaaataaaattacaataatgaagggacctttgaagatggacagtagttttaaatcgcggttgaacaaag aagtaaagagtcgaatttgagaggaatagtttgcatttcctatgttttaatgttaacaaaaaaaatgaaaatttcaggac attgaaaatctgctatcaccttttgggttgttttctgcgattattaaagtagcaatgatgatttgttgattattttgaca atttcaaaatcttggacatttttctttccatttctgtaggttcatccttgtggaaggtacagacacaacactgttgtgtt cattcttggtaaagaacatggattgactaatctctttagtgagtttaaagttcatattatgttatatttatgattgtttt tgcctaaaagtaggcttattgcaataacttctgacttttgagatgagtaggaatttgatttgatttgattttaaacctaa aatgcagtcaacaataatctaattctagggaaaacttgaatcattttcataattatatccctttaaagggccatgataca cttcagttaattaacacactcttagtcgatgaaactaacacccaaactaccaaaagacacatactgatagcagccagtgt cactcatcatgtccagctgaagatggcgtggcaaaaccttgttaataaataaatggaatttttttctttgcagctcttca ccgaattgaccgtcttacctctggaattcttatgtttgcaaggttctcaaacttcatgtcaattggtttccaaggggcct tccacatggcacagccatgttcctacaggcatttgatgcccccctaattaaaatgaatgactgatttcattgtacttcaa aatgtataaaaaatgtagccaccactgaatttgttgttttaaaatatactctttcagacacagtgagttgccattgcttc agcagtacatatagtagtctcagatctcagtatctcagatctcatatagtagtctcagatctctgctcccacatttgtca ttggcattggagcactctcatgcattatgcctccaaccccatgaaacatgccgcataatgtttgttgttcagaccaactt atattcagcatgcaatcagaaataagcaaacgtcacatccaaattattgattttttgccttttattagaacactgactaa aacccaggaacttgaaagtcaaatcagaaacagagaaattgaaaaggagtatgtttgtagagtacaaggtgaatttccaa ggtaaaaaatagccatgcacatttcaatgtaatttttagtcctgcacatttttaatgcatgtgcaagggagatgtgaaaa gcagtaggactatgaaaatctgaagacatttgaagacattttgaaaatctgaaggcatttgtttcatgtaatccttacta accaggtgaaatgttaacaaagatagaaaagtatatgatgttatgtttcttaaatgcaaccccaggtgttttgagctgtt ttttggttcactgttcagtaagacaaaaaggactaccaaccctaatactctcccctgattttatgccgagtattgcgata ctttgtatttgattatatctttgcttataattcatcaaatattttcgcttcgctctcggaaaactgttcgcttctcagaa cagataatgtcctcggacaaatatccgagcatattttcacgccaaatgaaggctattgtttatatattgtccaaaactct acttttattattgctgacatatctttagtggaacagtggactgtgaagagccaatagttgttgtatcacacaagattggt gtctgtcgagtaactcccaatggaaaaccatgtaaaactgtgttcacaaggattagctttgatggaaacacaagtgttgt taaatgtaagttttataatcacctttgcagttgaacattcacacatgtattgacacaatatatgccttattccaaaatag gtattattatcttcctttgcttttggcttaaatactaagtcttgttgcctcatttaagttgaatagacccttttcataat tgccaattataaattcttttgttattattaaaattagcctgactaacctcgtttttgagttgacaattcaaaagaatttt tactcccaaacaaggttagtgaggctaatttaaatgcatacaaaagaattttaaattggcagccatttatgaaaagggtc tataatattattcttttgaaatgtatgtgtatgcttaagagtgaggcaaaaaggtctcatttaaataagaaatgacttta gaaatgactgtatttcttttagtccaggaatcataaaaccggtataaattcactatgcttatacgtacagaagaaagatg tatctcaaatttagctgagaggtgtggagagttcgcagaatacacacgcttgcgcgatactggtgtcctcccagtctcgc gcgtattttttcgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnctctctctctccaaaattaaagactgctcgcagtttaatgcagacaaccctcgtagtcatagtgtgtattatt gcactggttcttggctaatccctttgtttcttaggtatcccatacactggaaggatgcatcagattcgtgttcatttgca gtggctgggttatccaatcataaatgatccaatttacaaccacagttcatggggaccaaacaggggttgtggtggtgtat cagatgaactggttcacgaggtaccttttcttaaatgttatttttaatttcttcatcgacttcactgtctaagcaagcta tgtcccaagctgttttttctggaagcaatttttttcttttgttttaaagtgctactatgatcaaatttttacatcttaat tttttaggtgtatcgcatagaattctatgaaagaatgaaaacgctgtttaccgtttgcaaatactggcattagttccgta gatattcaagtttgaaaaatgtgtaaattatgcaaacgagatgactgatgatctcatacactcaacccaatattacattt gtttaaatagagctatcatggccaatttgcagtgcagttcattgaaacttggcaggctaatagttctatagaaaacacac ctaaggtaataaaacactttgttgccatggcaactcactcttttccagttcccacccacttgatatgtaaatgattttca gctcgaaaaacgttgtacgagtcgacaaactcaagctaacatatttatatccttgttggataatgcatatctggcaccat ttgcaaatatgaaaattgaatgcagagtgtggccagaaatacctttaaagtagtggaggtctggaacccagtatgttgcc atggaaatgcaattgttaagcccaaattgtagggcacatttagtacaatcttattgcaaagaatgaaatatttctgatac aaattggctgagatatcttttttcatcatatttgatcaaaatttggttgagtatatgacgtcaacactgggctaatttgc atattttaaaaacttgaatatctctggaacaaaaagagatatctgaaaatagtaaacagcatttttcttctcatacaggc tacttgcttatgtcttaaaatggcttcaatagaaaagatgtgattttcgtcatagtagcactttaatgttgttgaaacga acaattttacatatgaaaccaagttaatacactgctttcgtttcttttcttgcgtcttaggtcatctgtgagcttgcaaa aagtcccaccatcacaggctttgttgatggtgaagacgacaaagtgaagtcacgctacatacccaacacaacagcggaag ttggatcaacacaaagcaaagacgactcggcctcccaaagctctagagatcagcgctatgataatgactgcagtgagtgt catatcattcgcagggaccccacccccgaggaactcagcatgtacctccattctgtcgcttacaaggtatgaactgattt ttgataaccttggccaataatgtaacgtttcgataacacttgctgtcactgaaactgctggctgacaaaatacaatgtga catgtggtcacttggtcttcagtttacgaaaaaagaaaaagaaaagagaaatgcggaagtcatcaatctctactggcatg tgctacagtggcaaaagcggattacgtaaacgtgaagatgtctcatgatggtggcaactaatcaggatatccttcttcgc ttttaaagagatttgaaggctagcaacaatcgctagtgcaaaaatatgctgctgctctttgcattcgagtttgtgaactt agcatttagagtggagccaaacaggtgttgcatcagtcacaagttttcatctgaccatagttttacacagtggtatttac attctcgtcacaaaatcaagcaaagcgttcgtttcctgaacattcgtcaacctgaacgatggcttctttaaattctgatt cgatatgctcgttatttctgtctagcaggacgcgaggatgacattctcaattttaatctcccagctggtaaatctttctt caatgtaacccacactgtaatttttcagttgtgtgtatcctactgcagggtccatcctgggagtacagaacagaagttcc accatgggccagagaggactggagccaacaggagacatgaaccttagcccttattttactcttgaacaaaagataaccct tcaaagataagggttttgagggcgacactcattcaaaatcatatcgagtcttgaaatcgtgtaagctttccaatttaaat tgttgcattatcaaatgactgtgtgtcattgagcgatttctgttctctctaccgcagttggattcctctgcctgatcgca ctcacgtgcctcttagtggcgcgtagggtatcaagtgtattgaactgaattaagttaaaatcgatgtgcaatcgattgt |
Protein
Protein ID | aug_v2a.21618.t1 |
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Definition | - |
>aug_v2a.21618.t1 MAEQDRKQEESKRAMKRRKKMEARKEHQKKPNLGNSKNPGFDRKRFEETISFVENGLRHVHPYYFTFKTHCKGRWVGRTL IEVFKEEFRSETQEYYDKAICVGKITVNGSQATQGTVLKDNDVICNTVHRHEPPVTDNPLEIIELTDDLVVLNKPSSIPV HPCGRYRHNTVVFILGKEHGLTNLFTLHRIDRLTSGILMFARTLTKTQELESQIRNREIEKEYVCRVQGEFPSGTVDCEE PIVVVSHKIGVCRVTPNGKPCKTVFTRISFDGNTSVVKCIPYTGRMHQIRVHLQWLGYPIINDPIYNHSSWGPNRGCGGV SDELVHEVICELAKSPTITGFVDGEDDKVKSRYIPNTTAEVGSTQSKDDSASQSSRDQRYDNDCSECHIIRRDPTPEELS MYLHSVAYKGPSWEYRTEVPPWAREDWSQQET* |