Gene
| Gene Model ID | aug_v2a.22223 |
|---|---|
| Locus | scaf15072 : 333 ... 1638 : + |
| To GenomeBrowser | scaf15072:333..1638 |
| Genes list of scaffold | scaf15072 |
Manual annotation
| Study field | TF not for publish |
|---|---|
| Gene name | Adi-SREBP2 |
| Description | Named thus because a bi-directional best hit result was obtained by BLASTP searches against NCBI nr database. See Homo sapiens SREBP (Q12772). This gene model does not have bHLH domain. There were no EST-assembled sequences near this genome region. Adi-SREBP and Adi-SREBP2 seem to be a haplotype. |
| mRNA evidence |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| aug_v2a.22223.t1 | gi|156393922|ref|XP_001636576.1| | predicted protein [Nematostella vectensis] | 0.0 |
| aug_v2a.22223.t1 | gi|556979970|ref|XP_005996764.1| | PREDICTED: sterol regulatory element-binding protein 1 [Latimeria chalumnae] | 3.0e-34 |
| aug_v2a.22223.t1 | gi|156393794|ref|XP_001636512.1| | predicted protein [Nematostella vectensis] | 2.0e-33 |
| aug_v2a.22223.t1 | gi|557282102|ref|XP_006023982.1| | PREDICTED: sterol regulatory element-binding protein 1 [Alligator sinensis] | 4.0e-33 |
| aug_v2a.22223.t1 | gi|564267922|ref|XP_006272763.1| | PREDICTED: sterol regulatory element-binding protein 1 [Alligator mississippiensis] | 1.0e-32 |
Transcript
| Transcript ID | aug_v2a.22223.t1 |
|---|---|
| Definition | - |
>aug_v2a.22223.t1 agatactttctgagtcgtgcacaggcctcctatgctgcccatggcacagcagccccagcctcattgcaatggctattcca gccgaagggacatcgctttttcgttagtagccggtggtcatgcactggtggagacagcatgtgggcgagtgtcagtaata atggtaagggtttacactgtgggggtcaaagatcaccttttgcggcaattcgaattgttccgagtacaaagtaacgttga gttgacctcaccagttgggtctaaggtaaggcaaggttcgcccaggccttgaaaaagaatatggtccatgaaaagtcctt aaaagctgaaaaaatgagattatttttctgaaaagtccgtgaatttcctcaaatactccctgaatcttgtcaaagctcct ttaggaaaatttgagttcattcttattagatatgtatatagagcggttttcaaatcgctgtcgaaaaaccaaaaccaaag caattactccgaccaatcacaacaggaacaaacagcgccctgaaccaatcacaatctctagcaatcacctgtaactcgct cgaagcgcgggaaaaatcacgtgtacatggtgcgattggttttggttttgcttctgattggttgaaatactggcgcgact cttttgagccaatcactaagcgtagcaatcgcaatcacgtaattactttcgacagtcatttgaaaactgcgctattatgt tgatacatgaaagttatgtatacttgaactgcgagttgaagtgaatgatcctcgcaattttgttttatcgctacttatgt tgtaacgaggaaggcctgaaaaattcaggcctgatgtatttctgccagacttctgcgcgaaccatttaagagttcaccct caggttgtggtcagcctactcatcacatttgaacgtcctactttcagttgatcccattgcgcatgtgcgtcaagcttttc gcgaacgtcttctccgctacgcactatcctccattgtgttgccaagcgcctccgatgacgatacgaagggtgaccagagt gtccgtgatgccttgctctacctgcacatgctcaatgagtgtgcttgcgatgatcaggtctccaaatggtgggttgcagt cggaatggtggctgttaattggctgggaggcgaggatgaggccgccgagagatactacagcacagttgagagtgttccca agagcctgtggaatgctgagtaagtttgttttgcgctcctcagcctgttgcatattttttcttgttttgggtgttgatca atgaattataaactaggaacaaccat |
|
Protein
| Protein ID | aug_v2a.22223.t1 |
|---|---|
| Definition | - |
>aug_v2a.22223.t1 RYFLSRAQASYAAHGTAAPASLQWLFQPKGHRFFVSSRWSCTGGDSMWASVSNNVDPIAHVRQAFRERLLRYALSSIVLP SASDDDTKGDQSVRDALLYLHMLNECACDDQVSKWWVAVGMVAVNWLGGEDEAAERYYSTVESVPKSLWNAE* |
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