Gene
Gene Model ID | aug_v2a.22223 |
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Locus | scaf15072 : 333 ... 1638 : + |
To GenomeBrowser | scaf15072:333..1638 |
Genes list of scaffold | scaf15072 |
Manual annotation
Study field | TF not for publish |
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Gene name | Adi-SREBP2 |
Description | Named thus because a bi-directional best hit result was obtained by BLASTP searches against NCBI nr database. See Homo sapiens SREBP (Q12772). This gene model does not have bHLH domain. There were no EST-assembled sequences near this genome region. Adi-SREBP and Adi-SREBP2 seem to be a haplotype. |
mRNA evidence |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
aug_v2a.22223.t1 | gi|156393922|ref|XP_001636576.1| | predicted protein [Nematostella vectensis] | 0.0 |
aug_v2a.22223.t1 | gi|556979970|ref|XP_005996764.1| | PREDICTED: sterol regulatory element-binding protein 1 [Latimeria chalumnae] | 3.0e-34 |
aug_v2a.22223.t1 | gi|156393794|ref|XP_001636512.1| | predicted protein [Nematostella vectensis] | 2.0e-33 |
aug_v2a.22223.t1 | gi|557282102|ref|XP_006023982.1| | PREDICTED: sterol regulatory element-binding protein 1 [Alligator sinensis] | 4.0e-33 |
aug_v2a.22223.t1 | gi|564267922|ref|XP_006272763.1| | PREDICTED: sterol regulatory element-binding protein 1 [Alligator mississippiensis] | 1.0e-32 |
Transcript
Transcript ID | aug_v2a.22223.t1 |
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Definition | - |
>aug_v2a.22223.t1 agatactttctgagtcgtgcacaggcctcctatgctgcccatggcacagcagccccagcctcattgcaatggctattcca gccgaagggacatcgctttttcgttagtagccggtggtcatgcactggtggagacagcatgtgggcgagtgtcagtaata atggtaagggtttacactgtgggggtcaaagatcaccttttgcggcaattcgaattgttccgagtacaaagtaacgttga gttgacctcaccagttgggtctaaggtaaggcaaggttcgcccaggccttgaaaaagaatatggtccatgaaaagtcctt aaaagctgaaaaaatgagattatttttctgaaaagtccgtgaatttcctcaaatactccctgaatcttgtcaaagctcct ttaggaaaatttgagttcattcttattagatatgtatatagagcggttttcaaatcgctgtcgaaaaaccaaaaccaaag caattactccgaccaatcacaacaggaacaaacagcgccctgaaccaatcacaatctctagcaatcacctgtaactcgct cgaagcgcgggaaaaatcacgtgtacatggtgcgattggttttggttttgcttctgattggttgaaatactggcgcgact cttttgagccaatcactaagcgtagcaatcgcaatcacgtaattactttcgacagtcatttgaaaactgcgctattatgt tgatacatgaaagttatgtatacttgaactgcgagttgaagtgaatgatcctcgcaattttgttttatcgctacttatgt tgtaacgaggaaggcctgaaaaattcaggcctgatgtatttctgccagacttctgcgcgaaccatttaagagttcaccct caggttgtggtcagcctactcatcacatttgaacgtcctactttcagttgatcccattgcgcatgtgcgtcaagcttttc gcgaacgtcttctccgctacgcactatcctccattgtgttgccaagcgcctccgatgacgatacgaagggtgaccagagt gtccgtgatgccttgctctacctgcacatgctcaatgagtgtgcttgcgatgatcaggtctccaaatggtgggttgcagt cggaatggtggctgttaattggctgggaggcgaggatgaggccgccgagagatactacagcacagttgagagtgttccca agagcctgtggaatgctgagtaagtttgttttgcgctcctcagcctgttgcatattttttcttgttttgggtgttgatca atgaattataaactaggaacaaccat |
Protein
Protein ID | aug_v2a.22223.t1 |
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Definition | - |
>aug_v2a.22223.t1 RYFLSRAQASYAAHGTAAPASLQWLFQPKGHRFFVSSRWSCTGGDSMWASVSNNVDPIAHVRQAFRERLLRYALSSIVLP SASDDDTKGDQSVRDALLYLHMLNECACDDQVSKWWVAVGMVAVNWLGGEDEAAERYYSTVESVPKSLWNAE* |