Gene
Gene Model ID | aug_v2a.22503 |
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Locus | scaf15516 : 1037 ... 5815 : - |
To GenomeBrowser | scaf15516:1037..5815 |
Genes list of scaffold | scaf15516 |
Manual annotation
Study field | Retrovirus |
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Gene name | Adi-Retrovirus-related 41-1 |
Description | This gene model has RVP, RVT_1, rve and DUF1645 domains. |
mRNA evidence |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
aug_v2a.22503.t1 | gi|391329899|ref|XP_003739404.1| | PREDICTED: uncharacterized protein K02A2.6-like [Metaseiulus occidentalis] | 0.0 |
Transcript
Transcript ID | aug_v2a.22503.t1 |
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Definition | - |
>aug_v2a.22503.t1 ctgaaactgaaacaacgtcgtttgaacgtcaaccctgctcaacagcgagtttagcaagcgattgaagaatgctcatcgat ccaccgaatgagggagaacaccccgtacaagctgttcaagcaccgatatttactagtaacgtcccggttcctccaaaaat tgaattatctggaaaccttgctaacaattggaagcagtggaagcaggtttggagtgcttacgagttagtcacgcgtctca atgagcagagcgatgaatatcgagtcgctgcgtttatcacatgtattggtccaaaggcgctcactatccacaatggcctt ccattccagagcgaagctgagatgaagaatttagccaaaattctagaattatgggaatcctattgcctgggtaaaacgaa cattatttatgaaagatatcaagaagccgatgaatcaatcaacacttacgcatcaaatttgagatctctctccgatacgt gcaactttggagcgcttaaagacgaaatgataagagacaggattgtccgcggagttcgtgacagcagtttaagaagaaac tacttcaggtaccggaacttacgcttgaaaggtgtatagatatgtgtcgaagcgccgaagctacgtcgactcaattggaa gctatgtcagcgcaaaattcacacgcacacccacccactaaggtgaactaaaaaagccgtccaagggcgccgataaatca tcttttgtaaaagattgccgattttgtggtcaagcgcatgagaaggaaagttcaaagtgtccagcttttggaaaaatttg ctctgcttgccaaaaagagaatcattttgccttgaaatgtgtccagaagaagaagtcgcacaagacaaagagaccaagaa acagaaacctccgcattagcattcagtgaatcaatttgacttgatgaaagtggagaagaaattctctctgtatcctgcta tgaagaagaaattaatgccattgataacccctcaaacaagatcctagccactatgaagattggtgggaagagcgtgaaaa tgttaattgattcaggtgcatcctgcaatgttctgcccatcaaatatcttcccaaaggaactgtggttaagaaatcgagt cacacccttaagatgtactcgaagtcaaccatgtcagccgttggtcaagcaaaaatccccctagttaatactaagaacag caaaagctatctgatcgacttcaccattgttgatggcaattttgctccattactcgggctagaaacggctcagaagatga agctactggttgtgcaaactcagaacattttgtccattagagaagatacatcgtcctgtgatgctcagaagcctaagttc acaagagatgcagtgatgagtgaatatccagatgtctttggagaagagttgggtggcatggaagggaaagtacaccttga aacagaccctaatgttgctcccacagttatgccgccacgtcttgtacctgttgcgcttaaagagagactgaagaatgaac ttgatcggttaactcagaggaaagtgatcagccctattcaagaacctacagattgggtttcaagtatgattgcaaccaag aagccagacgggaacattcgtttgtgcattgatccccatcacttaaatcgagccttaaaacgaagccattaccctctccc agtcatagaagagatcctgccagaactctcgaaggccaaggtattcagcaaagttggtttgaaagaaggctttcttcaag ttgaattagacgaagaatccagtaagctaactgtctttcagacaccttggggccgtatcgctttcacagattgccgtttg gaatcaccccagctccggaaatatttcagatgaaacttgaccaaaacttggaaggactgaaaggagtcttcaaaattgct gatgatatactaatcactggtcaaggagaaatagagcgagaggcagatgaagatcacgacagaaaccttaagtccctcct agatcggtgcagggagcggaatatcaaagttaacaagaataagtttacgttcaaatgcgatgatgtgcaattcattggcc accgcctaacaaaagaaggtctgaagcctgatcctgctaaactgagagcaatcctggatatgaagaaacctgatgcaaag gctaatgggtatggtcaagtacctcccaaaattccttagtgacctatctcagatttgtgaacctatcaggcgtctaacac ataaagatgtaccatggttttggacaaaagaacaggatgcagcctttaacaagatcaaggaagcagttacctctgcccca gtcctcaagtactttgattctagcaagcctacagaagaaagtggagatgcttcttcacaaggacttggttttgtactcac acaggaagaccaccctgtcacttatgcaagccgggctctgacacaggctgagaagcgctactcacaaattgaaaaggagc tcttggctcaagtctttggtttagaacacaaccaccagtacgtttatggcagagaagttattctttatacagatcacaag cccttggtgtccatctcaagtaagccgttagcatctgcacctaaacgcctacaaagacttctcctccgtttacagcagta cgatgcagaaatcagatacaggcctggaagagagatgtatctcgccgataccctatcaagagcctatctaagcctaagtc ctactgctgcactgagatcagagactgagaaagaagtaggaagtattcatgctgtagactatctacaatccggagcaaaa tcgttgctataaatgagatatttttcttcaaaatttgcatatcaaacaataaaatcaggaaaaaaggcctttgttctatt ataccccccttccccccaagcaatgttgcactcttgttatagttgttccctaaggaatgcaataattcctttttggcaac attgcatgggggcagggggggttaaaaaaaacagggtgtgttgtgtctcaaatacgtgaaattagaaccataaaatgagc tgtcgcaactctttttgcactggattttagctatctccgagcagcagcttagcgaaatcaagcaagaaacagctaaagtt ccaactcttcagacccataaaaatgtgttcttaaggggatggcccgaaaacagcagctcagtaccaaaggaagtctccga gtacttcaatgtcagagacgaacttgccgtacaagacggaatcatctttaaaggccaaagatgtgttatccctaggacct tgagacagaaagttaaagagaagatccaccgcgctcacatcggaatacaaggtcgtttactggccttccatgaatcaaga aatcactgattacattgaacactgtgatacatgtaacatgcatgcttatcaccttcagcgagagtctctcatagtacatg atgtgcctgaacgcccgtggcagaaagtgggttgtgacatattcaccttagatgaaaaggattttctatgtactgtagac tattattctggctattttgaagttgaccatcttgagaggaagactgcaagatccattatcaccaggttgaaacgccattt ctccagtcatggtatacctaacctgtttcaaagcgacaatggtccaccctttgactctcaagagtttagagatttcgcag cagcttatgagttcgaggtagtcaccagttctcctaactatcctcaaagtaacggccgcgtcgaaaacgctgttaaaaca gcaaagcagccaatgaagaaatccaagcaacctggagccgatttttattttgcattgctggactggaggaataccccaac ggagggcgtaggctgtccgcctgtgcaaagactttgcggccgaagaacaagaacccttcttccaacagcaacaagtcttt tgaaacctatgacaacccctggtgtgcgagaaaaacttcataaaaacaaggagcgtcacacctattactacaacagagga actcgagaactgtcgcccttacgcaacggtgatgctgttgtaattctacctagtccccaagctcgaaagtggaagaaagc tcaagttgaagatcaagtggatgtgcgatcatacgcagtacgcactgaagacggaagagttttttcggagaaaccgaaga cacctaaagaagtacgatccacctccagctatacacactccggaagtcgtggttgggccttcaaagattacggttacagc agaaggagcggtaaaggactctgaggagcctcccttacaaccaccccaacaagtatcagcagatgtctctactccacctt ggagtccaatagtaccagcaccagcacctgtggaagacccacctgtaggagtagccgcagcgtctaggggctcgagcaga cgtcagattaagttaccaggtcgtttcaaggactttatgatgaccaagcttcgctaggcagagaaactgaacgtttcgtt atgttctattgcaattcaagaactttcaacttttgcccatttcgctgccatttattgggctcatagctttcttaatgctt tgctgtgtttataacttacagggacatttcgaagaccattactcgtatctttattgtagtataagtttctttttaattat tttcttttctttacaaaaggaagggtgtaacgtcacctgatagatcttatccaataggatgccagcttatacacgtgctc ggtatcttgtaccggagtcgccactgaaccgatgtatggaatagaataaaagtttgttt |
Protein
Protein ID | aug_v2a.22503.t1 |
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Definition | - |
>aug_v2a.22503.t1 MLIDPPNEGEHPVQAVQAPIFTSNVPVPPKIELSGNLANNWKQWKQVWSAYELVTRLNEQSDEYRVAAFITCIGPKALTI HNGLPFQSEAEMKNLAKILELWESYCLGKTNIIYERYQEADESINTYASNLRSLSDTCNFGALKDEMIRDRIVRGVRDSS LRRNYFSGEEILSVSCYEEEINAIDNPSNKILATMKIGGKSVKMLIDSGASCNVLPIKYLPKGTVVKKSSHTLKMYSKST MSAVGQAKIPLVNTKNSKSYLIDFTIVDGNFAPLLGLETAQKMKLLVVQTQNILSIREDTSSCDAQKPKFTRDAVMSEYP DVFGEELGGMEGKVHLETDPNVAPTVMPPRLVPVALKERLKNELDRLTQRKVISPIQEPTDWVSSMIATKKPDGNIRLCI DPHHLNRALKRSHYPLPVIEEILPELSKAKVFSKVGLKEGFLQVELDEESTPEIFQMKLDQNLEGLKGVFKIADDILITG QGEIEREADEDHDRNLKSLLDRCRERNIKVNKNKFTFKCDDVQFIGHRLTKEGLKPDPAKLRAILDMKKPDAKANGRLTH KDVPWFWTKEQDAAFNKIKEAVTSAPVLKYFDSSKPTEESGDASSQGLGFVLTQEDHPVTYASRALTQAEKRYSQIEKEL LAQVFGLEHNHQYVYGREVILYTDHKPLVSISSKPLASAPKRLQRLLLRLQQYDAEIRYRPGREMYLADTLSRAYLSLSP TAALRSETEKERESLIVHDVPERPWQKVGCDIFTLDEKDFLCTVDYYSGYFEVDHLERKTARSIITRLKRHFSSHGIPNL FQSDNGPPFDSQEFRDFAAAYEFEVVTSSPNYPQSNGRVENAVKTAKQPMKKSKQPGADFYFALLDWRNTPTEGVGCPPV QRLCGRRTRTLLPTATSLLKPMTTPGVREKLHKNKERHTYYYNRGTRELSPLRNGDAVVILPSPQARKWKKAQVEDQVDV RSYAVRTEDGRVFSEKPKTPKEVRSTSSYTHSGSRGWAFKDYGYSRRSGKGL* |