Gene
Gene Model ID | aug_v2a.23368 |
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Locus | scaf16719 : 188 ... 9609 : + |
To GenomeBrowser | scaf16719:188..9609 |
Genes list of scaffold | scaf16719 |
Manual annotation
Study field | Collagen |
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Gene name | Collagen Domain Containing Protein23 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
aug_v2a.23368.t1 | gi|688604984|ref|XP_009293537.1| | PREDICTED: collagen alpha-1(I) chain-like isoform X2 [Danio rerio] | 5.0e-31 |
aug_v2a.23368.t1 | gi|688604986|ref|XP_009293539.1| | PREDICTED: collagen alpha-1(I) chain-like isoform X3 [Danio rerio] | 6.0e-31 |
aug_v2a.23368.t1 | gi|597806715|ref|XP_007243235.1| | PREDICTED: collagen alpha-2(I) chain-like, partial [Astyanax mexicanus] | 6.0e-31 |
aug_v2a.23368.t1 | gi|688604982|ref|XP_009293536.1| | PREDICTED: collagen alpha-1(I) chain-like isoform X1 [Danio rerio] | 7.0e-31 |
aug_v2a.23368.t1 | gi|583984962|ref|XP_006787735.1| | PREDICTED: collagen alpha-2(I) chain-like isoform X2 [Neolamprologus brichardi] | 2.0e-28 |
Transcript
Transcript ID | aug_v2a.23368.t1 |
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Definition | - |
>aug_v2a.23368.t1 ggttcaagaggcagaggtgggcttcctgggagcacaggagtcgacggaagaccagtaagtcattgctttaatgatgtcaa tgttcaaaggacaacgaaatcccattttcatttcgtttcattccttttgtctggtgatagggtcacaacggccctgatgg tttggctggaacaagaggagtaacaggttttcaagtaagcacaagaaaatcgaatctttgaagtggtcagctcagttaag tttaaagggacagtatcacgtcatttgaggaaaactcctgactattagagtggaaaatactttataaaatcaaagaaaat aagaagtaacgctaaagttttctttccaaggactttgttggtacactgaatgcaatttttgtcttcttcagctcagaatg gaaaaggtttgaaagttgaaaaaattggtcaactttttcaattttgagcgtgatattttcttaaaatttctgatttttta acatggttagcttttcaaattgatttgatattgtctttttggtttatgaggaatggtgaatcatctgagtcaagtaccaa gtttcgtttctcaacaagttcacaaaagaaagcagaactaccctgccgagcccctttaagcctggcaaaatctaggcctg aaattctctggaactgtttaagttgttaactacactttgcagaattctcactggttttatatcagtatttcaatatttaa agttcatatgatggagtgataagtctttctttaacactgatttgttttactcttttcaataagggtcgacctggagccac tgggcttccaggtccacctggacaaagtggtacaatggtgagtatttgtatacttgtgtccattgcttgtggcactgaaa gtgtgaccagcatcttataccagttaactgaaagtgtagtcaaatgttgagtaacaaagacagtcaagtggttttgatat gatatcttttgttgaaacttccctgagagtggttttaaataaataaaaatctttccaatcttggtgaaccctctgacgtc taaagcgtccttggaaatgtagtcgatggttaaattaaattaccagaattttaacattagttgtatggtgtttagggtct tcatggattgatggggcgcagagggaacatcggagaaacaggtgaaaaggtaagaacatcacacatcgttttctttttat gtacaacctaaatttaaagacggttgattttgtcctcttgcaacatcgtgatatattaaagaataaactgtttaggtgag accttgagctgaggtttaaaactgatgatgatgcgtgagaacggtgaaagctacgaagatttaaacagcagctcaatgcc tcactgggacagtttattccttagttaaacaaaacccaaatgaaggatggaagggatttgaaatagctgatcgttgtcct tgagattgatatagaaatgtcattttatttcaggccccagttgctcgaagcgtagatagcgctaaccagcgttaactacc atacaaacgtataggttttgatgcttctcaaccaatcgctagcgccaatgatgcttggagcagccggccccagattgtta cgttattgttgcatttctttttacagggggaggcaggagaatccggagaaagggggaaagatggaggaacaggaaagcag gtgcgtgcaaaattgatttcgtcaagttttgcgatcgcacggaaaagtttctgaaagtgagagtcgtcattttagggtga ggctggtgttgctggtatgatgggctctcctggtgacgtaggaaacattgtaagtacctcaccatttttttcatctttat gagtggtaagtagaacagaagttagaatgcagagttaattatttcattatgcattattttagggaccaggggggctgatg ggaacgatcggttcacagggacggcctgggcccaaggtaaattggagaccttttattcgttgtttaaaagtgttcgattg ctaaattctcctcatgtgattttctagggggaggtaggacagcatgggacacaaggcagcgcaggcctacaaggaggacg cggtatacctggtcctcctgggatgagtgggccgcctgggcccagtggaagtgatgtgagtacaaaagtcgaagaggaac aaagacaccaatcgaaatatactgagtgtttgaattttaactctttttgacgggaggggtcagggaactgaactgagctt cctggaagagtttgggaggtatcttaaatcgcctctcagggtgggacccatgccatttgtaaatggatagtttgtgtcct acttccaaagaggccaaatgaactatgtggattggtggtcaaataataaatttgtaattcattggtttagtatacagctc gtaccgatattttgctcgttgcacttaattttcctctggctttgggaatatagcacacaattcgcaaaaaatatccccat gcattgtacgctgaatcagcgaaaaggatatctatagttacatattataaaatcatcatctgactttccttctttttgca gggaacgtttggaaagacgggtgaccccgggctgccaggaagatccggtgctacggtatttcagttgggaaaatgttgaa ctgggccacccctcctagctcataaatgtttgctgtagaaataaaaaagaaagagagataattgacaatttcggcagttc agcagttgcgcatgcacaagtgtcatgtatttcccgccagcacgtgccgtaatgagcggcaaaatgacttctgagccttg aagtaagagcgtttgcaagagcgcatgcgtgaatggcaaatataaactatcaagacacgcgatgtgaataccatatggaa gaaataactggcactcttttgtatatatatagaaattgaccatagcatagggtgcgaacagagcttggttgannnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngctcgtcatggtacgccgctctag ccccacgtctagaagtactacttactggttccagtgtttttgttttcttagtctgggtattttgcttgcgcatgcgcaca ttttcaaagttgtaatgcctatgaaattcttaagaaattgatatcactctagattcccaattaaatacatcgaaaaaaaa agcattaaaacagcaataaatgcaaattgatcagtccttgtacatgtacagcagatagaaaataaacacagaatctttga atcccaactagcgagagtgaaacgtttgctggtactaagagattggaaccatgaataagcaaggacagcggccaacggac ttcatgttaaatttctttggttttactttagggaaacggtggggagcgtggtgacggaggaattaaaggagcagttggat ccaaggtgtgatatctttctgaatctcaatttttttttcgaattaggtgacctctttgaccaaaaatccctagttacaat agatccaatccatcaagttgcggcattaactttttataggacagtcattattccttctctttgagacggcgatggccatg attatgcattgagagcgagcaatccctcgatcgtgtattataattggttctagaccaatcagaggcgtagcgtattagtg gctcgatctgattggcctttatctgacgggacctcaactcaaatctagatcttaacgcaaactaatttgccaaggtcaac tgagagtgatctagatcttctcgagttttgtcaatggtcggcaagcaatgactaatggagaagcaacaaatccagtttaa ttttatctcctgtgtagggggatcgaggcgaccctggttcacaggggccagatggaggaccagggctgaaggtaataagc aacaagaaagttggcatttactttcgcttagcgatgccagtctttatgtcccaagtagtaagttgaactactcgtctgat tggatgcccggtcgtaaggtttgagcgatgagacatcggaagtcgactaaaaaagtatacttgcgaaaggaggtcgtact ttcgggaagtcacgttgcccggtggtagctagtcgttacattgatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnaaatgatttggctgagcaaaagcaatggttctgcacgctctgtgtggtttaggggtg acatcgctgccagaaacccaccaggtctttcctatttacctgcgctatttttttcaattcaacacctcgcgcggtaaaca tcgggaaagatcaagggaaaaaaagtgagaattaaaagtggctggaagtttggctgaccgagacgcggtgcgcataacga actgaataggccctgatggcgtttcaagcgagatagaggaggaactagtaggataagtagtcagctgagaaagcttatca tcacagcgtctactaatattacatcgttggacttgcttcattctgcagggctcaaagggattgcaagggtcccccggcga agaaggacgccaaggatcgcaagtgagtgggcgtccgagatgtgtctgtgtaaagtaatagagagctttagattcgaggg cgaagacgaggacgaggacgaggacgaagcactctgttttcgccacaacgaaatcttcaaactttttcgtcttcaactag gccgggacgacgaagttgattgcaacaacattgtcacgccatcactgtcacggatttgagcatgcgcacaatgagtaaaa gttgcccttggtcttcgctctcgtccttgtcctcgtcttcgtcctcgaatctaaagctcgctaatagctctcctttttct tgctcctttggggcatgacatgaaaatttgaaaaagattctgtttgtcggagatctaaatttgtatcgtcgagttaagca ggcaaatatatatgatgtagacagtagtttcctcgtgttgaaagtcagattacaaaatgttttgaaacagccaattaaat ttatgcaccgcttataataaatttggggtttggccttgtgtttttctaatatttcaatgtttcgtatttgttcgtgatga ggtaactctttccttcaaagaaagcaagctggaaagtaaagaactctttgacttatagcttagtttagtcaacaggaaaa gcgtttttcttagacatatctgtgttcactgtagggctctgaaggtccacaaggttaccaaggacaaacggtatgaaaag atgcctaattttcctttaacatggacttcttgaatttttgtcatcgtctcccaactagaaatcaaagcaacgtcctatgt aaggccggtcggataccctaaccactgagctacaagaactcatgtgagcaatttccctaagcaaccatcacttacatcat tcaacgtcattccgtctttcatattcaattattgcattggtagtcttgaatgcctgcccttcgccattttgcaaggcatt atgccttggaggtaaaattcttactgaaagaacgttttacaatcaatttttctattttacttggttttattccatgtgca tttatatgtatttgttcttcaactgacttttttcttacttgttttgatgtcttcgacaagggagaccctggaattagggt gagtaatgtgtattgtacgtcactgaatttatttgatcaacattggttttaggaagagaaatttaagagggaaacaaaat attccggctaatgaaaacatgttttcgttttctctgtcctagggaattgcaggagagccggtatgcagttttcttatcgt ctgtattccactcgtactgtttcgggcctctgtannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnactcgaacttatctgttcgcctcttctagtggagaagtgttaaaagaaaacagcgaaacagcttagcaac tcccgatgtaactcatttccttcagtaatgtgtttggctaaggactctctaattaaagaaaaattattatcgcttgtatt ccatgcatgttataagatttcaattatttcattctaacacgcgtcctttttccgcttgttagccagacttgggtgctctc agaggctacatgcaggtatgttatattaattaatatgcaacttattttagacgtccaagtttctcgtttcttttatgttg acaaatgtacgatcgcagcaaatgtggcactacattcaattttattcagatgtggaacaacgatcgacgcgctcatgatg ttggaggcaagaaagcacagctgtatcgaagcaccaaggtaaggcaactgttcattcctgaacttgcaattactttctat ttcatattgcagtttcttcaactcaaatttattgaaatactgatttctctttgttttctgtagaaagaagacgcatcctc gatagatccagtaagttactttatgctcatcacagtttgttcaagtgtgcactggtgcagtaagtcgacgactcatgaat caaaagcactttaacgacattctttgaatcacgattgagaagatttggtatcgacgacgtaaatgccaacgaatgtaccg ctttaaagaacacttcagagcaatcgtgaatttttgctttgctggagacgggaagaacacgtgctataaagtgcgtactg cacgtgtgactcgccttcnnnnnnnnnnnnnnnnnnnnnnnnnnngaaaaaacaaagcaaaacagttcagctttatgtga ctacctattagaaaacaactatcgttatggctgtgaagatataaagcattagctgtaagaataaaattgcaagagttcaa ttttggttgaaatctctgcgcgggcccagttcagtgttaatgcaaaaagctcttctcactgctcgtttgtgtttgtttag tttgaagtgaatttagctctgcttcattatcaacttgaattgctcaagaagccaaatggtacaaaggaatttccagcaaa gacttgtaaggagctgagcatgtgctatccgcatcttgaaagcggtgagttgaattataaggaggtccagtgaccaggag tgcttgggacggcgccaaatagcgctctaaccacgccctgtttccgcggtcttctatggtcccaaattcaacttttactt cctttaccataatctaacagttattcgtatgcgcgtgaataaatgcctattattttgcatgtattcctcagggactgtag cagtaacttttagtggtgttatcaaggttttgcgaagattttacgaatggacgcatgcgtaatcaaacaaaaagttgtca gttttgcatgagatatcgtaaatgtgatcaaatgactttttttggaacttgtttttcaggtgtgttttgggtggacccaa atgaaggtgtccctgaagatgcgataagtgtttactgtgatttctcattcaacgcgacttgtttgttctcaagtgaagaa agaaaggtaagattaaaggcagccaaatattgcgcgtccatataaggtttcctagtgcccatgcgtgtgctgttcatacc gatgcgccaaatatgcgttcgtgcacgtggcatgtggatgacataggacttccaccgtatgatgtacgtgctgccatcag gtatgttctgaagaaaacgagctggtgagccgtgagaaagggatctgcaccagattcttcgacgccgacaattcttctcc ctctctgcatggctagccatgcacgcaaatctaagcgatctcctggccgaagagcatcgtgaaggtacagtcacggtgtt ctggcaacatgtccagcggtatcgcctttcatgtttttggtttgtttccgccactgcgaaagtttcgccggaaaattgaa atgtctaccccgaagcccatgtttattctggtaattggtttcttttccgtccttttagccgtttgtttccctaaagagaa agtggtattcaggattggatgaatataagtggctaagtgcagatcttggagcctttgaaaag |
Protein
Protein ID | aug_v2a.23368.t1 |
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Definition | - |
>aug_v2a.23368.t1 GSRGRGGLPGSTGVDGRPGHNGPDGLAGTRGVTGFQGRPGATGLPGPPGQSGTMGLHGLMGRRGNIGETGEKGEAGESGE RGKDGGTGKQGEAGVAGMMGSPGDVGNIGPGGLMGTIGSQGRPGPKGEVGQHGTQGSAGLQGGRGIPGPPGMSGPPGPSG SDGTFGKTGDPGLPGRSGATGNGGERGDGGIKGAVGSKGDRGDPGSQGPDGGPGLKGSKGLQGSPGEEGRQGSQGSEGPQ GYQGQTGDPGIRGIAGEPPDLGALRGYMQMWNNDRRAHDVGGKKAQLYRSTKKEDASSIDPVSYFMLITVCSSVHWCSVF WVDPNEGVPEDAISVYCDFSFNATCLFSSEERKPFVSLKRKWYSGLDEYKWLSADLGAFEK |