Gene
Gene Model ID | aug_v2a.23371 |
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Locus | scaf16720 : 29046 ... 32613 : + |
To GenomeBrowser | scaf16720:29046..32613 |
Genes list of scaffold | scaf16720 |
Manual annotation
Study field | Retrovirus |
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Gene name | Adi-Retrovirus-related 2-21 |
Description | DNA sequence of this gene model showed similarity with that of Adi-Retrovirus-related 2-19. This gene model contains Retrotrans_gag domain. |
mRNA evidence |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
aug_v2a.23371.t1 | gi|156377954|ref|XP_001630910.1| | predicted protein [Nematostella vectensis] | 4.0e-28 |
aug_v2a.23371.t1 | gi|156385121|ref|XP_001633480.1| | predicted protein [Nematostella vectensis] | 6.0e-26 |
aug_v2a.23371.t1 | gi|156348648|ref|XP_001621927.1| | hypothetical protein NEMVEDRAFT_v1g221400 [Nematostella vectensis] | 7.0e-22 |
aug_v2a.23371.t1 | gi|156357412|ref|XP_001624213.1| | predicted protein [Nematostella vectensis] | 2.0e-15 |
aug_v2a.23371.t1 | gi|156357429|ref|XP_001624221.1| | predicted protein [Nematostella vectensis] | 9.0e-10 |
Transcript
Transcript ID | aug_v2a.23371.t1 |
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Definition | - |
>aug_v2a.23371.t1 atgtttcacatcatttcagtgtgacctttcaggaccttttgacaacgagctcgacaacagaaagtaaaaagaccgcaaaa aaggaaagccaatcctcgatttccctcgatgaaattaaagcaagagttatgtcccaggatccatcacaatggagcttagg atgtattcagcagtgcctgatgaaacttgggcaaagtacatcaaggacgaaggaactcctcgttaaaagaatcgttaacc tgaaaagcaacccgctgattctagataaaatagtccagaaaagaaaaacgtccttgcaattcaagtcacggctacaagtg cgtgaaattccaccaccagaagcaccatggatcgcagactcgagtttgtgcccaaaggtaagctgaactttattttaata ggccggcaaacaagagattttgttcttttactagaatcaagaatcagggattcctcgtcccaaagaaattatccttgttt ttggccaataatttacaaactgcgaataaaaaaatgtatctatgagtggctgatcaatgtgtgttttgctgttattttag gtcactcctgctatgataaaaaagtttcaagcactcaaacgccaaggtaagttgggccagtaccggaaagctcttcgcat gtttgaaagcagaaaagtgaaaactgttaaagtcatcaaagaaggagaagatatttttgtaaaagcacacatttaagagt tttgcacctactacgaacaatggaataacaagacctgcagttgtcctttttcggaatggggccccaatgaagggccactg ccagtgttctgtgggactctctggattacgctgtcgagtcatttgcctgctgatctttttggagcattgcaccagtcatg gaattaaatttattgctctgacttgcacacaaaaaattcagaagtggcacagaaagggtgtaacaaagcaaactgagcta tgttatcaaactctgtccagcttccgaaatgttcggtcatccagaaagacactggacagttctcgcactaaaacaaaggt gaatgtttcaaatgaccaagccttgacaaatgaatttgtggaaaaacgtgattggtcaaaacgggatgtcaatgaaatag tgtctagagnnnnnnnnnnnnnnnnnnnntagtgatgtctggtatgctccattgctcctggacaatatataacatttgtt gaatagttaatttattacgtatcttgaatagttaatttaccatgattatgcttgatcgtgtaagccttaggaatttgccg gtacgtgatgcgttcgaggtggtccctcttcaattggccatgtctagtaatttttggcttgtcttttatgggtggtcttc cttgagtgtatcacgtctagtagtattacaatgagatccaaagtccgataaagcgacaaaaccttgttataaataagtgt gtatgactagtagttagttagttagttggagtcaagactagaggtaacaacaagagttgtaagttgaagcaaatacaaga aatatttgtatcacagtgccagtgttgtttctgaggtaatcttagagtctcggtacctttcgctaaggcaagaaaggctt aacaaaaattggtggtgaatccgggtaaagcaagacgcgccccggaagataaaggtgcaagcatttggggacaacgaact tgtaagtgaagattatcttcttcgaaccatacataaaccagtcattgcaagctcgtttagagttctctggatgaactgaa cacagtattattacgatgatttatcactgagtagcgaggtagtcatgcgatatttgtgctagcaagttgaaactatcttt tccagtctattagtgagtttttttttttcgttcgggttatgcgctttggcttttgaaagtgtcttgggtttcagccctga ttactaggcgtaaggcacgtgcgctggcggtgcagggtcctgcggaaagtggagagggcttgccagattctccttcagcg gtcgagtggccaagcctacccgccctgcaaaccccaccgcaacagcccaataattctagatttcagggtgtgcttcgttc cttcagaaaagtaattcacccgttgcgacgcggatctcacgatagcgcttctcgtcgagaacatcctagtttcgagtcag ttgagagtttgccacccccaccgttagagcaattagccgaaacaaacgtccgagttagcgagaacgcaactctgcgtcag cccgatttttcacagataaatgatttcccttctgcgcagtcaccgcgcccacctttgcctgtgagacacatccctcctgg tcttttggatccgttagaggactcagaacttagtgagcttccaagttcgtctgatagcgaggaaagttcgttaccatcgc ttcaagttagtttgacatcggaaccggtttcgaatatctcagaacaccgaaatatctcgggacccgatagtgtttttaac cagtcttctgacagcgagttcgttatcacagatcacgtacccatgtctcgccaagaacgagcggatgattcagtcgcaca gatctgcgatgccattcgtagtatggcagttcaagaaaacccgcgggcaaagttagtggttagttttccagtattccgtg gcgacgagagcgaggacgtatttgatttcttggataatttcaaaagagcggccaccctaaatggttggttaaatgaagat ttggcagtaggtttgcctttgtatcttaacggccatgctagcccttggtataaaactctgggaaacgtagatggcaaaac ttttgaccaattgaaagccctgatgacagagcattttgcaagcggagcaagcgcttggcgcataagacaaaccataggtc aacgccgccagttggaaaaggaacccgtttccgaacattcctatagtgttcgtatgcattgtgctaggttaaatttgcta acatctgagtggactcattacttcgttcagggtctaaaacctgagattcgcaaatacgttattttacaacaacccgaaaa ttatgaggttgcagaaaattacgcaaaagtcaaagagactgttttggcaagttccgataagcctcaagcattcgactcaa aacaaatgtcatctcaaatcgtggctgagctgagtagggtaatttctccaagaaatcagactgttggcgcaatgggtagt caacagacaaattttcatgacgcacattttaaaagaattgcgagtgatgaatttcgcggcaaagtagtagaccctcaggg agtgaatttttgggctctttgggcgttccttcgtgactttttcattgcgcaatcaactaacgactcacaccaatgttcta catctttaaacatgctgggccaccaatatcgttgttttaacttttggaaagttttgtgcactccaaaatgggcacttgcg acatgattatgtacattggacaaaatttcgtacttcatcgactgaggaaccacgagttgagaaaaactatcgggagcact atgcttctggctacgatcgagatgatacaacaaatcatctcgactgat |
Protein
Protein ID | aug_v2a.23371.t1 |
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Definition | - |
>aug_v2a.23371.t1 MSQDPSQWSLGCIQQCLMKLGQSTSRTKELLVKRIVNLKSNPLILDKIVQKRKTSLQFKSRLQVREIPPPEAPWIADSSL CPKVTPAMIKKFQALKRQALITRRKARALAVQGPAESGEGLPDSPSAVEWPSLPALQTPPQQPNNSRFQGVLRSFRKVIH PLRRGSHDSASRREHPSFESVESLPPPPLEQLAETNVRVSENATLRQPDFSQINDFPSAQSPRPPLPVRHIPPGLLDPLE DSELSELPSSSDSEESSLPSLQVSLTSEPVSNISEHRNISGPDSVFNQSSDSEFVITDHVPMSRQERADDSVAQICDAIR SMAVQENPRAKLVVSFPVFRGDESEDVFDFLDNFKRAATLNGWLNEDLAVGLPLYLNGHASPWYKTLGNVDGKTFDQLKA LMTEHFASGASAWRIRQTIGQRRQLEKEPVSEHSYSVRMHCARLNLLTSEWTHYFVQGLKPEIRKYVILQQPENYEVAEN YAKVKETVLASSDKPQAFDSKQMSSQIVAELSRVISPRNQTVGAMGSQQTNFHDAHFKRIASDEFRGKVVDPQGVNFWAL WAFLRDFFIAQSTNDSHQCSTSLNMLGHQYRCFNFWKVLCTPKWALAT* |