Gene
| Gene Model ID | habu1_s104_g00534 |
|---|---|
| Locus | habu1_scaffold104 : 148476 ... 169232 : + |
| To GenomeBrowser | habu1_scaffold104:148476..169232 |
| Genes list of scaffold | habu1_scaffold104 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| dna-directed rna polymerase iii subunit rpc5 isoform x1 | EC:2.7.7.6 GO:0003899 GO:0005730 GO:0005813 GO:0006144 GO:0006206 GO:0006351 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s104_g00534.t1 | 1 | 1 | Sin_N | 4 | 416 | 0.0 | 485.1 | 0.0 | 0.0 | 477.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s104_g00534.t1 | gi|602675649|ref|XP_007443301.1| | PREDICTED: DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Python bivittatus] | 0.0 |
| habu1_s104_g00534.t1 | gi|602675651|ref|XP_007443302.1| | PREDICTED: DNA-directed RNA polymerase III subunit RPC5 isoform X2 [Python bivittatus] | 0.0 |
| habu1_s104_g00534.t1 | gi|327289121|ref|XP_003229273.1| | PREDICTED: DNA-directed RNA polymerase III subunit RPC5 [Anolis carolinensis] | 0.0 |
| habu1_s104_g00534.t1 | gi|543729358|ref|XP_005505749.1| | PREDICTED: DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Columba livia] | 0.0 |
| habu1_s104_g00534.t1 | gi|705702787|ref|XP_010126515.1| | PREDICTED: DNA-directed RNA polymerase III subunit RPC5 isoform X1 [Chlamydotis macqueenii] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 8.6 |
| Venom grand-1 | 9.8 |
| Pit, infrared sensing | 10.8 |
| Nose | 10.9 |
| Brain-1 | 3.4 |
| Eye | 6.6 |
| fetal fibroblast | 22.7 |
| venom gland-2 | 19.9 |
| Brain-2 | 3.3 |
| Spleen | 7.1 |
| Lung | 6.2 |
| Liver | 12.1 |
| Kidney | 8.9 |
| Pancreas | 12.9 |
| Small intestine | 7.9 |
| Large intestine | 6.3 |
| Stomach | 6.5 |
| heart | 4.9 |
| ovary | 63.2 |
| cheek muscle | 9.8 |
Transcript
| Transcript ID | habu1_s104_g00534.t1 |
|---|---|
| Definition | - |
>habu1_s104_g00534.t1 ggaggagcgccccctggcgcccgcctccccttcccaggggcgagcattatgggtacaaagaggcgggccccaaccccttt cccacgtgcttggaggagtttcccgcaacatggctgcgagctgagatcctgggctttgcgggcacgttgcatggttcaga aagagggtggagggggggctccagacccgagcaacagcccccctcctctacctcaacttagagggggggttgcatggttg caacaaaaagcggttaacactaagcaacattgcaaggttagtttttttccagtgctactatggccaatgaggaagacgac cctattatacaagagattgacgtctacctggctaaaagtctgtcggaaaaactgtatctgttccagtatcctattcgtcc agcttcgatgacctacgatgaggttactcacctctccgcgaagatcaaaccgaagcaacaaaaggttgaactggaaatgg ccatcgacacgtcgaattccaactactgtcgcagcaaaggggaacagattgccctcaacgtagacggcacgtgtaccgat gagaccaacacttactcttcgaagctgatggacaaacagacgttctgttcctcgcaaaccaccagcaacatttcgcgata cgctgctgctgtctacaaaagaggggagcttcacttgactccgttgaacgggatcctgcaaatgcggccaagttttgcct atttggacaaagcggatgcgaaataccgagaacgtgaagctgccaatgagcatggtgattcttctcaggatgaggctgag gaagacgtcaagcaaatcacggtgaggttctcccggccagaatcggaacaggcccgccaacggcgggttcaatcttacga attcctgcaaaaaagacaagcagaagagcactgggtccacctccattattacggtttgaaggacagccgttctgagcacg agcgccaatatttattcagccaaggacacagcatggctgggaacacggaattaattaaatcgccaagtgaatacttgatg atgctggttccaccaagcgtagaagaagaaaaggaaaaaccggtagcgccaagcaatatgctgtcgatggctcagttgcg gacgctccctttggccgaccagattaagattctgatgaaaaatgatccggctgcagttttgcgaagcatccagcaggtgg cgctgctagtccaggggaactgggtggtgaaaagtgacatcctttaccccaaagatacctccagcccacacagcggtgtc ccagccgaagtcctgtgccgaggaagggattttgttatatggaaattcacgcaggatcggtgggtggtacggaaggaagt tgcggctgtaaccaaactgggtccagaagatgtgaaagacttcctggagcacgtctcttttttgaggataaaccgaggct gggaatttaagctccgctatgacgaagattttgtcaagaagcatccagatgtggtgcagaggcaaaaaatgctttggatg ggcattcaggccaagttggaaaaagtatacagcctgtccagggagcagctggcttcaaagaaaccagcaacacagccagc tgctccagtggtgatctctggagagcagagggtcaacatggccaagtccaaagtcaaccagagctacagccagttggacc aagaccaccgaaagagaaaagccgagaaccggctggaggaatctcttcatgcgacggacctcctcggggtccatatcaag gaggaaccaatgagcgacgaggaaccgatggagacctcggcccccgagaacctcaataatggactggtcaacgggatcca tttggaagatagcctggactccatcaacggccacgtgccgatcccggagagggtgaccgaggaactgcgagcgtttgtgg gggccacctttaagaaacaatacgtcctgactctgaacgagctaaaacggttatttaaccttcatctggctggtttacct cccgggaatcttttgtttagcggaatttcggacaagatgttgcaagacatggtgttagacgtaggctgcaagcagatcat ggtgccttttcccccgcagatgacagcgttgcccaacgaacagaaagtgtttgcgctttgggaagctggcgatgtttacg atcagcaccggcaaattttgcttgaaatcttttccaaaaactaccgtgtgcgtcgaaacgtcatccagaaccgactggcc cgggagtacggcgaagatctagacaaacaggaggtggataaagttttgaaggattgttgtgtaagtcaaggaggcatgtg gtacctcaaagggacagtccagcagccaagctcttgacgatgggagtcactttcattgcatcctttttcgatcccaggat ggccaaagagaaaacagaagggtagggaaggaaaacagcttgatcctttcaaagccttccagatggaagacctaccagag atggccctgctagctgcttgcaacggcatccaaaccactaatcttgaacggacagcggatctgtatgtcccccctagatt aaaatctggatccctaatattaaag |
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Protein
| Protein ID | habu1_s104_g00534.t1 |
|---|---|
| Definition | - |
>habu1_s104_g00534.t1 MANEEDDPIIQEIDVYLAKSLSEKLYLFQYPIRPASMTYDEVTHLSAKIKPKQQKVELEMAIDTSNSNYCRSKGEQIALN VDGTCTDETNTYSSKLMDKQTFCSSQTTSNISRYAAAVYKRGELHLTPLNGILQMRPSFAYLDKADAKYREREAANEHGD SSQDEAEEDVKQITVRFSRPESEQARQRRVQSYEFLQKRQAEEHWVHLHYYGLKDSRSEHERQYLFSQGHSMAGNTELIK SPSEYLMMLVPPSVEEEKEKPVAPSNMLSMAQLRTLPLADQIKILMKNDPAAVLRSIQQVALLVQGNWVVKSDILYPKDT SSPHSGVPAEVLCRGRDFVIWKFTQDRWVVRKEVAAVTKLGPEDVKDFLEHVSFLRINRGWEFKLRYDEDFVKKHPDVVQ RQKMLWMGIQAKLEKVYSLSREQLASKKPATQPAAPVVISGEQRVNMAKSKVNQSYSQLDQDHRKRKAENRLEESLHATD LLGVHIKEEPMSDEEPMETSAPENLNNGLVNGIHLEDSLDSINGHVPIPERVTEELRAFVGATFKKQYVLTLNELKRLFN LHLAGLPPGNLLFSGISDKMLQDMVLDVGCKQIMVPFPPQMTALPNEQKVFALWEAGDVYDQHRQILLEIFSKNYRVRRN VIQNRLAREYGEDLDKQEVDKVLKDCCVSQGGMWYLKGTVQQPSS |
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