Gene
| Gene Model ID | habu1_s105_g00545 |
|---|---|
| Locus | habu1_scaffold105 : 175586 ... 186024 : + |
| To GenomeBrowser | habu1_scaffold105:175586..186024 |
| Genes list of scaffold | habu1_scaffold105 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| mismatch repair endonuclease pms2 | GO:0005634 GO:0006281 GO:0016445 GO:0030983 GO:0032300 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s105_g00545.t1 | 1 | 1 | HATPase_c | 34 | 108 | 7.0e-11 | 41.8 | 5.2e-14 | 1.9e-10 | 40.4 |
| habu1_s105_g00545.t1 | 1 | 1 | HATPase_c_3 | 39 | 141 | 1.5e-11 | 44.0 | 8.2e-15 | 3.1e-11 | 43.0 |
| habu1_s105_g00545.t1 | 1 | 1 | DNA_mis_repair | 268 | 361 | 8.5e-22 | 76.8 | 9.5e-25 | 3.5e-21 | 74.8 |
| habu1_s105_g00545.t1 | 1 | 1 | MutL_C | 674 | 818 | 3.1e-28 | 98.1 | 1.7e-31 | 6.4e-28 | 97.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s105_g00545.t1 | gi|602636730|ref|XP_007425217.1| | PREDICTED: mismatch repair endonuclease PMS2 [Python bivittatus] | 0.0 |
| habu1_s105_g00545.t1 | gi|637355247|ref|XP_008119094.1| | PREDICTED: mismatch repair endonuclease PMS2 [Anolis carolinensis] | 0.0 |
| habu1_s105_g00545.t1 | gi|558115753|ref|XP_006112999.1| | PREDICTED: mismatch repair endonuclease PMS2 [Pelodiscus sinensis] | 0.0 |
| habu1_s105_g00545.t1 | gi|591371781|ref|XP_007060701.1| | PREDICTED: LOW QUALITY PROTEIN: mismatch repair endonuclease PMS2 [Chelonia mydas] | 0.0 |
| habu1_s105_g00545.t1 | gi|564252652|ref|XP_006265348.1| | PREDICTED: mismatch repair endonuclease PMS2 [Alligator mississippiensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 5.8 |
| Venom grand-1 | 4.6 |
| Pit, infrared sensing | 4.5 |
| Nose | 5.3 |
| Brain-1 | 4.3 |
| Eye | 4.2 |
| fetal fibroblast | 7.8 |
| venom gland-2 | 6.3 |
| Brain-2 | 4.3 |
| Spleen | 9.0 |
| Lung | 5.5 |
| Liver | 2.3 |
| Kidney | 3.1 |
| Pancreas | 2.8 |
| Small intestine | 5.9 |
| Large intestine | 5.5 |
| Stomach | 3.9 |
| heart | 3.7 |
| ovary | 13.3 |
| cheek muscle | 4.7 |
Transcript
| Transcript ID | habu1_s105_g00545.t1 |
|---|---|
| Definition | - |
>habu1_s105_g00545.t1 cggttctcttccttttgatcgactgacggaaaatgggcgggaaggagccggaccgcccctttaggctgatttgcatacta tttgcatacttcatttgaaaagtgagcaggcagcaaagggttaatggcatcacccaacagaatggaatttactccaggag tggaaaaaaacatcaagccaattgatcgcagatcagttcatcagatctgttcaggccaagtggtgctgaatctatgtacc gctgtaaaagagctggtggaaaacagcctagatgctggtgctactaacgttgaagtgaagcttaaagattatggagcgga tcttattgaagtatctgataatggttgtggcgtagaagacgaaaactttgcaggcttgacactgaagcattatacttcca agatccaagaattctctgatctcatcaacgtggaaacgttcggcttccgaggtgaagctctgagctctttgtgtgcgtta agcaaggtttccattgtcacttgtcacaagtcggccaatattgggacacggctggcgtttgatcacagcgggaagatcac ccagagagtccctgtctctcggccacaggggactactgtcagcctccagcagctgttttgtactttgccggtccgacaca aagaatttcagcgtaacataaagaaggaatttgccaaaatggttcagatactgcaagcgtactgcatcatttgcactggg gttcgaattaattgcaccaatcaagttggtcaagggaagaagcaggctgtggtgagcaccagtggaagttctactttaaa agaaaacattggtgccatatttggacacaagcaggtacaaaccctgattccctttgtacagctgcccccaagcggagaaa cctgcgaagaatacggcttgaacgtttctgctctgcccactaagctttataccatctcaggattcgtttcgcagtccaat cacggcgatggaaggagcacaacggataggcagttctttttcattaaccagcggccgtgtgacccaggaaaggtttccag acttgtgaatgaagtctatcatatgtataataggcaccaatatccatttattcttcttaacatctgtgcagaatctggat gtgtggacgtcaacgtaactccagataaaaggcagatcttgcttcaagaagagaagcttttattagcaattctaaaaaca tccttgatggggatgtttggcactgacgttaataaactggtcgtcaatcaaaagctgatcgatcttgaagggaacttgaa aagcgtcccccgaaacgagagggaagcgtctcccttgggaacatccaccaatccttcgcctccaaatcggaacgagacat ccagaataaacctcgccgttgctcgtctgaaggagtccttttctcgcgggaaaacatcggcttttcaagacagcgagaaa gccccaccgaaagagaggccccccaatccaggactacgccagatgtttgctggtttttcagcctctccccgaaagaaaac catgcctagcaaggcatccgaagacgggaatgaggtcatttccaggaaatcctggcttgcaggcaggaagttggagaact caaccgaagatacggattctggtgtggggaccgtctccgccgagtcagatggcggtttcggcaccccagaaatgggggtc cgttttagagctgaaagcacgggttctcccaaaggagaaccccgtgtttttagcggaggaattcagagcagcgacggtgg atctagcggggttttctggccctccgaaccaaaccagggcaaagaagataatagcttctctcagccagccactttctctc ccaaggcaaaacgttttaagatccatcaagctatttcccccgacttctcggagagaacagccgagcaggactcgcaaccc ttgtacgacatcccggtaaaaatggaaaagaggacggtgcctttagccgtctcttggagcaccttggcggaccgaatccg gaggcaaataaagcgccaggagacggaaggagaaatgctgaaattcagaaagtttagggcaaagattagcccggaagaaa acaaaatggcagaggacgagttaagaaaggaaatcagcaaagagatgtttgctaaaatggatatagttggccagtttaat ctgggatttatcatcgccaagctgaaatcggacctctttatcattgatcagcacgctaccgatgaaaaatacaactttga gatgttgcaagagcataccgtcctgcaggggcagaagctgatcaagcctcaaaatcttaatttaacggctgtgagtgaaa gtatcttgatggataatctggagattttccaaaaaaatggatttgattttgtggtggatgaaaatgctcctgtaactcag agagcgaagctcatatctttaccaaccagcaaaaactggactttcggtcctcaagacatagaagaattaatcttcatgtt aagcgattctccgggaatcatgtgtaggccatccagagtgaggcaaatgtttgcttctagagcctgtcgaaaatctgtga tgattggaaccgccctcacggctggtgaaatgaagaagctgattactcacatgggtgaaattgagcatccctggaactgt ccgcacggcaggcccaccatacgacatttagccaacctggacctcatcacacaagagtgacaggctactagcacttattt tattgtggaatgcaaaccatgatctagtttgcatcggagctctcagttttgctggaccagaagctgaaatcatggttttg tgttgcaaaagaagaatgtggttgttttttttttctccctctttctttctcaaacgggtttggttcatatagacacgata actttccatcctctggtctctgaaagaagacttttggacatttttattgaaaaagcagccagaaaacagggcttgtttta ttgctacctttgtataaatattggctttctgtcccttttattgatttcctctggacagtaagaattaaatgttcatagta ggctctttggatgacgtcctgttttagaccagatccgttttgtaaataaagatttttatacatgatatttct |
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Protein
| Protein ID | habu1_s105_g00545.t1 |
|---|---|
| Definition | - |
>habu1_s105_g00545.t1 MASPNRMEFTPGVEKNIKPIDRRSVHQICSGQVVLNLCTAVKELVENSLDAGATNVEVKLKDYGADLIEVSDNGCGVEDE NFAGLTLKHYTSKIQEFSDLINVETFGFRGEALSSLCALSKVSIVTCHKSANIGTRLAFDHSGKITQRVPVSRPQGTTVS LQQLFCTLPVRHKEFQRNIKKEFAKMVQILQAYCIICTGVRINCTNQVGQGKKQAVVSTSGSSTLKENIGAIFGHKQVQT LIPFVQLPPSGETCEEYGLNVSALPTKLYTISGFVSQSNHGDGRSTTDRQFFFINQRPCDPGKVSRLVNEVYHMYNRHQY PFILLNICAESGCVDVNVTPDKRQILLQEEKLLLAILKTSLMGMFGTDVNKLVVNQKLIDLEGNLKSVPRNEREASPLGT STNPSPPNRNETSRINLAVARLKESFSRGKTSAFQDSEKAPPKERPPNPGLRQMFAGFSASPRKKTMPSKASEDGNEVIS RKSWLAGRKLENSTEDTDSGVGTVSAESDGGFGTPEMGVRFRAESTGSPKGEPRVFSGGIQSSDGGSSGVFWPSEPNQGK EDNSFSQPATFSPKAKRFKIHQAISPDFSERTAEQDSQPLYDIPVKMEKRTVPLAVSWSTLADRIRRQIKRQETEGEMLK FRKFRAKISPEENKMAEDELRKEISKEMFAKMDIVGQFNLGFIIAKLKSDLFIIDQHATDEKYNFEMLQEHTVLQGQKLI KPQNLNLTAVSESILMDNLEIFQKNGFDFVVDENAPVTQRAKLISLPTSKNWTFGPQDIEELIFMLSDSPGIMCRPSRVR QMFASRACRKSVMIGTALTAGEMKKLITHMGEIEHPWNCPHGRPTIRHLANLDLITQE |
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