Gene
| Gene Model ID | habu1_s105_g00548 |
|---|---|
| Locus | habu1_scaffold105 : 263936 ... 278118 : + |
| To GenomeBrowser | habu1_scaffold105:263936..278118 |
| Genes list of scaffold | habu1_scaffold105 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| neurotrophin- partial | GO:0005165 GO:0007165 GO:0008083 GO:0008283 GO:0040007 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s105_g00548.t1 | 1 | 1 | NGF | 140 | 253 | 0.0 | 196.3 | 0.0 | 0.0 | 195.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s105_g00548.t1 | gi|530610016|ref|XP_005296635.1| | PREDICTED: neurotrophin-3 isoform X1 [Chrysemys picta bellii] | 0.0 |
| habu1_s105_g00548.t1 | gi|530610018|ref|XP_005296636.1| | PREDICTED: neurotrophin-3 isoform X2 [Chrysemys picta bellii] | 0.0 |
| habu1_s105_g00548.t1 | gi|557292618|ref|XP_006028822.1| | PREDICTED: neurotrophin-3 isoform X2 [Alligator sinensis] | 0.0 |
| habu1_s105_g00548.t1 | gi|557292616|ref|XP_006028821.1| | PREDICTED: neurotrophin-3 isoform X1 [Alligator sinensis] | 0.0 |
| habu1_s105_g00548.t1 | gi|602660383|ref|XP_007435857.1| | PREDICTED: neurotrophin-3 [Python bivittatus] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 1.0 |
| Venom grand-1 | 0.9 |
| Pit, infrared sensing | 1.1 |
| Nose | 0.5 |
| Brain-1 | 0.3 |
| Eye | 0.6 |
| fetal fibroblast | 0.0 |
| venom gland-2 | 0.0 |
| Brain-2 | 0.2 |
| Spleen | 1.1 |
| Lung | 1.1 |
| Liver | 0.0 |
| Kidney | 0.1 |
| Pancreas | 2.7 |
| Small intestine | 0.0 |
| Large intestine | 1.3 |
| Stomach | 0.1 |
| heart | 10.8 |
| ovary | 0.1 |
| cheek muscle | 0.5 |
Transcript
| Transcript ID | habu1_s105_g00548.t1 |
|---|---|
| Definition | - |
>habu1_s105_g00548.t1 gtggaggaggccaaagtctcccaaccaaatgcatgagaggcattttcttaagggtcagagaagggaccgacacccaccag ccaccgcctgcaaggtgaagccaagaccaggaagcttccatcatccttacaaggtggtgctgtggaaagcaagtcaaagt tctggaagtttgtagaaagaggccttatatgtgaacaaggtgatgtccatcatcttttctgtgacctttctggcgtttct gtgtggcatccaatcgaccagcatggatcaagggagtttatcagaagattccatgaattctttccttaggacactgattc aagctggtatttggaaaaacaaggtccccaagcagacggacagaaccaaggatggcgtgccaaccacagggagggaaacc gaggctgaagcagaggtgactacaagccaagatattcgattttcgggtttccggcctatcgtttcggtggatgcggaatt agtgaggcagcagagacgcttcagttctcccagggtcctcctgagtgaaaatacccccctggagccccctcctttgtatc tgatggaggagcccatggtgctgaaccgaacatctcgccggaagaggcatgcggaaggaaagacccaccgtggggaatac tctgtgtgtgacagcgagagccgatgggtcacggacaaaacgtccgcggttgacatccgaggacaccaggtgactgtcct gggagaaatccgaatgggcccgtctccggtcaaacaatatttttacgaaaccaggtgcaagcaagccaaacctgcccgga gtggttgtcgcggcattgacgacaagcactggaattcccagtgcaaaacctcgcaaacgtttgtccgcgcattgacttcg gaaaacaataaactcgtcgcctggcgatggatcagaatagacacctcttgcgtctgcgccttgtccaggaaaattggacg aacataggtgcgtttctctcggccatataagttattatgactaaattatacgatatgcatgtagcatataaaggtttcta ttgtttatatattataagtggtccttatttattaaagtccagccaactactctctctctctctctctctcgtgataaaga acagtaaaaaaatggatgtataactgtggcaaacatcatttctcctttctgtttgtgattgcaggtcctccacaactttc tataaactgcttaaaaaaaatacccttt |
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Protein
| Protein ID | habu1_s105_g00548.t1 |
|---|---|
| Definition | - |
>habu1_s105_g00548.t1 MSIIFSVTFLAFLCGIQSTSMDQGSLSEDSMNSFLRTLIQAGIWKNKVPKQTDRTKDGVPTTGRETEAEAEVTTSQDIRF SGFRPIVSVDAELVRQQRRFSSPRVLLSENTPLEPPPLYLMEEPMVLNRTSRRKRHAEGKTHRGEYSVCDSESRWVTDKT SAVDIRGHQVTVLGEIRMGPSPVKQYFYETRCKQAKPARSGCRGIDDKHWNSQCKTSQTFVRALTSENNKLVAWRWIRID TSCVCALSRKIGRT |
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