Protobothrops flavoviridis ver. 1.0

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDhabu1_s105_g00549
Locus habu1_scaffold105 : 294754 ... 312974 : -
To GenomeBrowser habu1_scaffold105:294754..312974
Genes list of scaffold habu1_scaffold105

Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
habu1_s105_g00549.t1 1 1 Anoctamin 8 132 3.6e-10 39.1 4.1e-14 6.0e-10 38.3

Blast Hit to nr / sp
query Subject ID Subject Name evalue
habu1_s105_g00549.t1 gi|602660385|ref|XP_007435858.1| PREDICTED: anoctamin-2-like, partial [Python bivittatus] 0.0
habu1_s105_g00549.t1 gi|705676919|ref|XP_010117183.1| PREDICTED: anoctamin-2-like [Chlamydotis macqueenii] 0.0
habu1_s105_g00549.t1 gi|697038076|ref|XP_009581489.1| PREDICTED: anoctamin-2 [Fulmarus glacialis] 0.0
habu1_s105_g00549.t1 gi|694656881|ref|XP_009484272.1| PREDICTED: anoctamin-2 {ECO:0000250|UniProtKB:Q9NQ90}-like, partial [Pelecanus crispus] 0.0
habu1_s105_g00549.t1 gi|699600172|ref|XP_009869699.1| PREDICTED: anoctamin-2-like, partial [Apaloderma vittatum] 0.0

Expression profile
Libraries FPKM
>Adult
Venom fang forming tissue 0.2
Venom grand-1 0.0
Pit, infrared sensing 0.5
Nose 8.0
Brain-1 0.8
Eye 3.0
fetal fibroblast 0.0
venom gland-2 0.0
Brain-2 0.7
Spleen 0.0
Lung 0.6
Liver 0.0
Kidney 0.0
Pancreas 0.0
Small intestine 0.1
Large intestine 0.0
Stomach 0.0
heart 0.0
ovary 0.1
cheek muscle 0.0

Transcript
Transcript IDhabu1_s105_g00549.t1
Definition-
>habu1_s105_g00549.t1
gaggcatgtccgtctcctgtttccttggccgattcacgcggagaatgactttgtttctcttccaggcctttgtcatttcg
gtcacttcggatttcatcccacgcctggtctaccaatacgcgtacagtcacaacgggacaatgcacggcttcgtcaatca
caccctgtcatacttcaacgtcagcgactttaaggctggaacccagccagaaaactcgccatttgaagaggaggtttcct
tctgcaggtttaaggattacagggagccaccgtgggctgaaagcccttatgaattctctaagcagtattggtctgttctg
tctgcccgtctggcatttgtcattatctttcagaatctggtgatgttcctcagtgtgctggtggactggctgatcccaga
tattcccaaggacatcagtgagcagatcaagaaggagaagagcgtgctggtggatttcttcttgaaggaagagcactcga
aactgaaattgatagaaaactttatcacccgggacaaacaaaggagttggagtgaaacgagaaggaagaggagtcgggcg
gccagtttctcccagttttaccgaagtcgccggggcagttttacgtctcttagttcgagacacagcgatgtcaccgttaa
atcagcagatcgactcagtaaagaacaccaaaatcttgaacaaatgaaaccaacaaaatctgaattcttcaccttgatgc
tggtcgtcctcttctcttctcttccacctttcccagcatcagatccatctctagagagctgtttcttcccataatgcctc
cgaagtaggataatttgagcccggtcatttgtgcctcaagtgagaacttccgactgatttatttgacgatccatcggttt
atttcctttatatggagacataatttaacaaagtgtagtgttactcatctttggctcaaagtggctgaccactgccaaca
cattaataaaatctgaatgcacaagtgccaaa

Protein
Protein IDhabu1_s105_g00549.t1
Definition-
>habu1_s105_g00549.t1
MTLFLFQAFVISVTSDFIPRLVYQYAYSHNGTMHGFVNHTLSYFNVSDFKAGTQPENSPFEEEVSFCRFKDYREPPWAES
PYEFSKQYWSVLSARLAFVIIFQNLVMFLSVLVDWLIPDIPKDISEQIKKEKSVLVDFFLKEEHSKLKLIENFITRDKQR
SWSETRRKRSRAASFSQFYRSRRGSFTSLSSRHSDVTVKSADRLSKEHQNLEQMKPTKSEFFTLMLVVLFSSLPPFPASD
PSLESCFFP

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